EWM21906.1, cds8764 (CDS) Nannochloropsis gaditana

Overview
NameEWM21906.1
Unique Namecds8764
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:175873..176385 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21906.1
Productintegral membrane protein
Orig transcript idgnl|cribi|Naga_100070g20.4220.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:175873..176385 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003425Uncharacterised_Ycf19
Homology
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|585102252|gb|EWM21906.1| (integral membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 333.569 bits (854), Expect = 1.323e-115
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
Query:    1 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
            MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK
Sbjct:    1 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|553196379|ref|XP_005856331.1| (integral membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292732|gb|EKU20034.1| integral membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 332.028 bits (850), Expect = 6.946e-115
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0
Query:    1 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
            MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSS+HQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK
Sbjct:    7 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSFHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 176          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|299471382|emb|CBN79336.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 116.316 bits (290), Expect = 3.525e-29
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 0
Query:   74 ASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
            A +WV P K V++P L     AF+ RIVLSWYP++DLN  P NL+AWPTEP L  TR ++PPAFGVDISPI+W    + + EIL+  QGIL L+  K
Sbjct:  133 APAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1210178801|dbj|BAY97861.1| (hypothetical protein NIES37_18090 [Tolypothrix tenuis PCC 7101] >gi|1210252630|dbj|BAZ71632.1| hypothetical protein NIES50_01750 [Aulosira laxa NIES-50])

HSP 1 Score: 106.686 bits (265), Expect = 5.939e-27
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0
Query:   78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169
            V+    ++ PLL L    F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP  GVDI+PIIW    + LREIL+  QG+LT++  
Sbjct:    4 VNLTTWILNPLLGLMIFLFIFRIILTWYPQVDLNRFPTNLIAWPTEPFLALLRKLVPPIGGVDITPIIWVGICSLLREILLGQQGLLTMMSH 95          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|797213460|ref|WP_045874393.1| (integral membrane protein [Tolypothrix sp. PCC 7601] >gi|407265612|gb|EKE97159.1| YGGT family protein [Tolypothrix sp. PCC 7601] >gi|1210169484|dbj|BAY88559.1| hypothetical protein NIES3275_05370 [Fremyella diplosiphon NIES-3275])

HSP 1 Score: 106.301 bits (264), Expect = 6.991e-27
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0
Query:   78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169
            V+    ++ PLL L    F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP  GVDI+PIIW    + LREIL+  QG+LT++  
Sbjct:    4 VNLTTWILNPLLGLMIFLFIFRIILTWYPQVDLNRFPTNLIAWPTEPFLALLRKLVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMISH 95          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1147622747|ref|XP_020079749.1| (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Ananas comosus])

HSP 1 Score: 108.997 bits (271), Expect = 7.431e-27
Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = 0
Query:   29 KGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKA-----VIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
            +GL +S +HQ AP AP  +S   + ++  +   L E+      +   + + PA A     +  P L   G  F++RIV+SWYP++ + K P  ++  PTEPFL VTR V+PP  GVD++P++WF  ++FL EILV  QG+L LL Q+
Sbjct:   35 RGLAKSKFHQ-APAAPLESSICTQSSVSHAQHELCESLSYYSQMLTIADIDPATAKTLVGITGPFLSAFGFLFILRIVMSWYPKLPVGKFPYVIVYAPTEPFLKVTRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQQ 180          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1147622745|ref|XP_020079748.1| (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Ananas comosus] >gi|1035954889|gb|OAY76818.1| Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Ananas comosus])

HSP 1 Score: 108.612 bits (270), Expect = 1.451e-26
Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = 0
Query:   29 KGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKA-----VIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
            +GL +S +HQ AP AP  +S   + ++  +   L E+      +   + + PA A     +  P L   G  F++RIV+SWYP++ + K P  ++  PTEPFL VTR V+PP  GVD++P++WF  ++FL EILV  QG+L LL Q+
Sbjct:   45 RGLAKSKFHQ-APAAPLESSICTQSSVSHAQHELCESLSYYSQMLTIADIDPATAKTLVGITGPFLSAFGFLFILRIVMSWYPKLPVGKFPYVIVYAPTEPFLKVTRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQQ 190          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1210111889|dbj|BAY31017.1| (hypothetical protein NIES2107_28650 [Nostoc carneum NIES-2107])

HSP 1 Score: 105.531 bits (262), Expect = 1.650e-26
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 0
Query:   78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169
            V+    ++ PLL L    F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP  GVDI+PI+W    + LREIL+  QG+LT++  
Sbjct:    4 VNLTTWILNPLLGLMIFLFIFRIILTWYPQVDLNRFPTNLIAWPTEPFLALLRKLVPPIGGVDITPILWVGIFSLLREILLGQQGLLTMISH 95          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1210108234|dbj|BAY27364.1| (hypothetical protein NIES2100_71880 [Calothrix sp. NIES-2100])

HSP 1 Score: 105.531 bits (262), Expect = 1.668e-26
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 0
Query:   78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169
            V+    ++ P+L L    F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP  GVDI+PIIW    + LREIL+  QG+LT+L +
Sbjct:    4 VNLTTWILNPVLGLMIFLFIFRIILTWYPQVDLNRFPINLIAWPTEPFLALLRKLVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95          
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1062966959|ref|WP_069350152.1| (hypothetical protein [Scytonema millei] >gi|1061901733|gb|ODN57572.1| hypothetical protein QH73_001975 [Scytonema millei VB511283])

HSP 1 Score: 104.76 bits (260), Expect = 2.644e-26
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 0
Query:   81 AKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169
            A  ++ P+L L    F+ RI+L+WYPQVDLN+LP NL+AWPTEPFL   R +VPP  GVDI+PIIW    + LREIL+  QG+LT+L +
Sbjct:    7 AAWILGPVLGLMTFLFIFRIILTWYPQVDLNRLPYNLVAWPTEPFLVPLRKIVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95          
The following BLAST results are available for this feature:
BLAST of EWM21906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102252|gb|EWM21906.1|1.323e-115100.00integral membrane protein [Nannochloropsis gaditan... [more]
gi|553196379|ref|XP_005856331.1|6.946e-11599.41integral membrane protein, partial [Nannochloropsi... [more]
gi|299471382|emb|CBN79336.1|3.525e-2955.67conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210178801|dbj|BAY97861.1|5.939e-2754.35hypothetical protein NIES37_18090 [Tolypothrix ten... [more]
gi|797213460|ref|WP_045874393.1|6.991e-2754.35integral membrane protein [Tolypothrix sp. PCC 760... [more]
gi|1147622747|ref|XP_020079749.1|7.431e-2739.46protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
gi|1147622745|ref|XP_020079748.1|1.451e-2639.46protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
gi|1210111889|dbj|BAY31017.1|1.650e-2653.26hypothetical protein NIES2107_28650 [Nostoc carneu... [more]
gi|1210108234|dbj|BAY27364.1|1.668e-2654.35hypothetical protein NIES2100_71880 [Calothrix sp.... [more]
gi|1062966959|ref|WP_069350152.1|2.644e-2656.18hypothetical protein [Scytonema millei] >gi|106190... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8794rna8794Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications