EWM21906.1, cds8764 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|585102252|gb|EWM21906.1| (integral membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 333.569 bits (854), Expect = 1.323e-115 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 Query: 1 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK Sbjct: 1 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|553196379|ref|XP_005856331.1| (integral membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292732|gb|EKU20034.1| integral membrane protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 332.028 bits (850), Expect = 6.946e-115 Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0 Query: 1 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSS+HQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK Sbjct: 7 MRLVILCHGIIFTLLAFVGLPAQAFIPPKGLPRSSFHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 176
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|299471382|emb|CBN79336.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 116.316 bits (290), Expect = 3.525e-29 Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 0 Query: 74 ASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170 A +WV P K V++P L AF+ RIVLSWYP++DLN P NL+AWPTEP L TR ++PPAFGVDISPI+W + + EIL+ QGIL L+ K Sbjct: 133 APAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1210178801|dbj|BAY97861.1| (hypothetical protein NIES37_18090 [Tolypothrix tenuis PCC 7101] >gi|1210252630|dbj|BAZ71632.1| hypothetical protein NIES50_01750 [Aulosira laxa NIES-50]) HSP 1 Score: 106.686 bits (265), Expect = 5.939e-27 Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0 Query: 78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169 V+ ++ PLL L F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP GVDI+PIIW + LREIL+ QG+LT++ Sbjct: 4 VNLTTWILNPLLGLMIFLFIFRIILTWYPQVDLNRFPTNLIAWPTEPFLALLRKLVPPIGGVDITPIIWVGICSLLREILLGQQGLLTMMSH 95
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|797213460|ref|WP_045874393.1| (integral membrane protein [Tolypothrix sp. PCC 7601] >gi|407265612|gb|EKE97159.1| YGGT family protein [Tolypothrix sp. PCC 7601] >gi|1210169484|dbj|BAY88559.1| hypothetical protein NIES3275_05370 [Fremyella diplosiphon NIES-3275]) HSP 1 Score: 106.301 bits (264), Expect = 6.991e-27 Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0 Query: 78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169 V+ ++ PLL L F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP GVDI+PIIW + LREIL+ QG+LT++ Sbjct: 4 VNLTTWILNPLLGLMIFLFIFRIILTWYPQVDLNRFPTNLIAWPTEPFLALLRKLVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMISH 95
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1147622747|ref|XP_020079749.1| (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Ananas comosus]) HSP 1 Score: 108.997 bits (271), Expect = 7.431e-27 Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = 0 Query: 29 KGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKA-----VIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170 +GL +S +HQ AP AP +S + ++ + L E+ + + + PA A + P L G F++RIV+SWYP++ + K P ++ PTEPFL VTR V+PP GVD++P++WF ++FL EILV QG+L LL Q+ Sbjct: 35 RGLAKSKFHQ-APAAPLESSICTQSSVSHAQHELCESLSYYSQMLTIADIDPATAKTLVGITGPFLSAFGFLFILRIVMSWYPKLPVGKFPYVIVYAPTEPFLKVTRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQQ 180
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1147622745|ref|XP_020079748.1| (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Ananas comosus] >gi|1035954889|gb|OAY76818.1| Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Ananas comosus]) HSP 1 Score: 108.612 bits (270), Expect = 1.451e-26 Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = 0 Query: 29 KGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKA-----VIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170 +GL +S +HQ AP AP +S + ++ + L E+ + + + PA A + P L G F++RIV+SWYP++ + K P ++ PTEPFL VTR V+PP GVD++P++WF ++FL EILV QG+L LL Q+ Sbjct: 45 RGLAKSKFHQ-APAAPLESSICTQSSVSHAQHELCESLSYYSQMLTIADIDPATAKTLVGITGPFLSAFGFLFILRIVMSWYPKLPVGKFPYVIVYAPTEPFLKVTRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQQ 190
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1210111889|dbj|BAY31017.1| (hypothetical protein NIES2107_28650 [Nostoc carneum NIES-2107]) HSP 1 Score: 105.531 bits (262), Expect = 1.650e-26 Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 0 Query: 78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169 V+ ++ PLL L F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP GVDI+PI+W + LREIL+ QG+LT++ Sbjct: 4 VNLTTWILNPLLGLMIFLFIFRIILTWYPQVDLNRFPTNLIAWPTEPFLALLRKLVPPIGGVDITPILWVGIFSLLREILLGQQGLLTMISH 95
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1210108234|dbj|BAY27364.1| (hypothetical protein NIES2100_71880 [Calothrix sp. NIES-2100]) HSP 1 Score: 105.531 bits (262), Expect = 1.668e-26 Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 0 Query: 78 VSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169 V+ ++ P+L L F+ RI+L+WYPQVDLN+ P NLIAWPTEPFL++ R +VPP GVDI+PIIW + LREIL+ QG+LT+L + Sbjct: 4 VNLTTWILNPVLGLMIFLFIFRIILTWYPQVDLNRFPINLIAWPTEPFLALLRKLVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95
BLAST of EWM21906.1 vs. NCBI_GenBank
Match: gi|1062966959|ref|WP_069350152.1| (hypothetical protein [Scytonema millei] >gi|1061901733|gb|ODN57572.1| hypothetical protein QH73_001975 [Scytonema millei VB511283]) HSP 1 Score: 104.76 bits (260), Expect = 2.644e-26 Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 0 Query: 81 AKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 169 A ++ P+L L F+ RI+L+WYPQVDLN+LP NL+AWPTEPFL R +VPP GVDI+PIIW + LREIL+ QG+LT+L + Sbjct: 7 AAWILGPVLGLMTFLFIFRIILTWYPQVDLNRLPYNLVAWPTEPFLVPLRKIVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95 The following BLAST results are available for this feature:
BLAST of EWM21906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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