EWM21899.1, cds8746 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|585102245|gb|EWM21899.1| (cullin family, partial [Nannochloropsis gaditana]) HSP 1 Score: 498.049 bits (1281), Expect = 2.819e-178 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query: 1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP 244
MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP
Sbjct: 1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP 244
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|553191734|ref|XP_005855442.1| (cul2 protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293618|gb|EKU20918.1| cul2 protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 492.271 bits (1266), Expect = 5.189e-176 Identity = 242/244 (99.18%), Postives = 242/244 (99.18%), Query Frame = 0
Query: 1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP 244
MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGG SGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRA PAPPP
Sbjct: 1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGASGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRASPAPPP 244
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|1173934843|gb|OQR86063.1| (Cullin family protein [Achlya hypogyna]) HSP 1 Score: 87.0409 bits (214), Expect = 5.665e-16 Identity = 63/189 (33.33%), Postives = 88/189 (46.56%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRA 238
+ SK VDF + WS I +++ L +G P + W +Y VY ICT+P G P A A L+ L + L + +V L AAE A +FL LY + +Y+ G +L AYL+R+WI H + G P GV + EL +WR V S L QR NA++ RA
Sbjct: 4 LKSKPVDFDSVWSEIEPSVEVLVNGSHRPFSYEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIVEIL--AAEPGDA-EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWRDIVH----STLQQRVVNALLHIFRA 166
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|698819357|ref|XP_009842707.1| (hypothetical protein H257_16076 [Aphanomyces astaci] >gi|574102296|gb|ETV67849.1| hypothetical protein H257_16076 [Aphanomyces astaci]) HSP 1 Score: 83.5741 bits (205), Expect = 8.629e-15 Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
+ASK VDF W I +++ L SG P + W ++Y VY ICT+P G P A L+ HL D L Q + + +L+A H +FL Y + +++ G +L YL+R+WI H + G P QGV I EL +WR
Sbjct: 4 LASKHVDFDIVWREIEPSVEVLVSGCHDPFSYDKWQSVYRGVYNICTNP-----GTPQAET--------------LFQHLRDVLVQRVENIA-EVLSA--EHGEAEFLGQYCSHFNMFSTGTSYVSELFCYLNRYWIRYAHSEYGQAPIQGVYPIPELALRIWR 145
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|673037290|ref|XP_008872606.1| (hypothetical protein H310_08576 [Aphanomyces invadans] >gi|574471402|gb|ETV98409.1| hypothetical protein H310_08576 [Aphanomyces invadans]) HSP 1 Score: 83.5741 bits (205), Expect = 1.040e-14 Identity = 51/164 (31.10%), Postives = 73/164 (44.51%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
+ASK V+F W I +++ L SG P + W ++Y VY ICT+P G P A L+ HL D Q + L+ H QFL Y + +++ G +L +YL+R+WI H + G P QGV I EL +WR
Sbjct: 4 LASKHVEFEVVWREIEPSVEVLVSGNHDPFSYDKWQSVYRGVYNICTNP-----GTPQAET--------------LFQHLRDVFVQRVSDIADVLMA---EHGEAQFLAQYCSHFNMFSTGTAYVSELFSYLNRYWIQYAHSEYGQAPIQGVYPIPELALRIWR 145
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|1173955598|gb|OQS02543.1| (Cullin family protein [Thraustotheca clavata]) HSP 1 Score: 83.1889 bits (204), Expect = 1.286e-14 Identity = 57/184 (30.98%), Postives = 84/184 (45.65%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVV 233
+ SK VDF WS I +++ L +G P + W +Y VY ICT+P G P A A L+ L + L + +V L ES A +FL LY + + +Y+ G +L AYL+R+WI H + G P GV + EL +WR V + + R NA++
Sbjct: 4 LKSKPVDFETLWSEIEPSVEVLVNGTHRPFSYEKWQGVYRGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIVEIL--QGESGDA-EFLELYCNHFNIYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWRDIVH----TTMQHRVVNALL 161
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|813181584|ref|XP_012206145.1| (hypothetical protein SPRG_10002 [Saprolegnia parasitica CBS 223.65] >gi|641528996|gb|KDO23194.1| hypothetical protein SPRG_10002 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 82.8037 bits (203), Expect = 1.636e-14 Identity = 61/190 (32.11%), Postives = 85/190 (44.74%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDI--SNLLQRAFNAVVADLR 237
+ SK VDF W+ I +++ L +G P + W +Y VY ICT+P G P A A L+ L + L + +V LLTA +FL LY + +Y+ G +L AYL+R+WI H + G P GV + EL +W RDI S L R NA+V R
Sbjct: 4 LKSKPVDFDMVWNEIEPSVEVLVNGSHAPFSNEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIV-ELLTAEPGDA--EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIW------RDIAHSALKHRVVNALVHIFR 165
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|298710078|emb|CBJ31794.1| (similar to Cullin-1 (CUL-1) isoform 1 [Ectocarpus siliculosus]) HSP 1 Score: 82.0333 bits (201), Expect = 2.857e-14 Identity = 50/172 (29.07%), Postives = 80/172 (46.51%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTS--GEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLT--AAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVL 217
+ + +DF W + ++L + G+G P W++LYT VY++CT P P H +LY L + L + V+ LL A +H+ + L Y + Y+ GM G YLDR WI +H + G+ P +GV F+ E+ +VW++RV
Sbjct: 4 LTPEPIDFDDTWVLLESSLITILQDLGQGFP--NDLWISLYTGVYKLCTKPM-----DPQ--------------HSKLYARLKETLELYVAGVLKGLLAFDNATAHSYTELLVRYRTSFHNYSVGMHYGSDWFKYLDRHWINTNHCETGVSPKEGVYFVREMSLMVWKERVF 154
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|669141620|ref|XP_008606372.1| (hypothetical protein SDRG_02555 [Saprolegnia diclina VS20] >gi|530741656|gb|EQC39898.1| hypothetical protein SDRG_02555 [Saprolegnia diclina VS20]) HSP 1 Score: 79.337 bits (194), Expect = 2.444e-13 Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
+ SK VDF W+ I +++ L +G P + W +Y VY ICT+P G P A A L+ L + L + +V LLTA +FL LY + +Y+ G +L AYL+R+WI H + G P GV + EL +WR
Sbjct: 4 LKSKPVDFDMVWNEIEPSVEVLVNGSHAPFSYEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIV-ELLTAEPGDA--EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWR 145
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|669141622|ref|XP_008606373.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530741657|gb|EQC39899.1| hypothetical protein, variant [Saprolegnia diclina VS20]) HSP 1 Score: 79.337 bits (194), Expect = 2.631e-13 Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 0
Query: 50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
+ SK VDF W+ I +++ L +G P + W +Y VY ICT+P G P A A L+ L + L + +V LLTA +FL LY + +Y+ G +L AYL+R+WI H + G P GV + EL +WR
Sbjct: 4 LKSKPVDFDMVWNEIEPSVEVLVNGSHAPFSYEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIV-ELLTAEPGDA--EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWR 145 The following BLAST results are available for this feature:
BLAST of EWM21899.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|