EWM21899.1, cds8746 (CDS) Nannochloropsis gaditana

Overview
NameEWM21899.1
Unique Namecds8746
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:138068..138800 -

Link to JBrowse

Properties
Property NameValue
Start range138068
Start range.
Protein idEWM21899.1
Productcullin family
Partialtrue
Orig transcript idgnl|cribi|Naga_100070g1.4213.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:138068..138800 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0031625ubiquitin protein ligase binding
Vocabulary: INTERPRO
TermDefinition
IPR016159Cullin_repeat-like_dom
IPR001373Cullin_N
Homology
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|585102245|gb|EWM21899.1| (cullin family, partial [Nannochloropsis gaditana])

HSP 1 Score: 498.049 bits (1281), Expect = 2.819e-178
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP 244
            MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP
Sbjct:    1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP 244          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|553191734|ref|XP_005855442.1| (cul2 protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293618|gb|EKU20918.1| cul2 protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 492.271 bits (1266), Expect = 5.189e-176
Identity = 242/244 (99.18%), Postives = 242/244 (99.18%), Query Frame = 0
Query:    1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGVSGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRACPAPPP 244
            MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGG SGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRA PAPPP
Sbjct:    1 MKTFIRRLSSRGEDAASSLASTTSASSLAESQRNPPHGGGASGSRVSLGMASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRASPAPPP 244          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|1173934843|gb|OQR86063.1| (Cullin family protein [Achlya hypogyna])

HSP 1 Score: 87.0409 bits (214), Expect = 5.665e-16
Identity = 63/189 (33.33%), Postives = 88/189 (46.56%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVVADLRA 238
            + SK VDF + WS I  +++ L +G   P +   W  +Y  VY ICT+P     G P A A              L+  L + L +    +V  L  AAE   A +FL LY   + +Y+ G     +L AYL+R+WI   H + G  P  GV  + EL   +WR  V     S L QR  NA++   RA
Sbjct:    4 LKSKPVDFDSVWSEIEPSVEVLVNGSHRPFSYEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIVEIL--AAEPGDA-EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWRDIVH----STLQQRVVNALLHIFRA 166          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|698819357|ref|XP_009842707.1| (hypothetical protein H257_16076 [Aphanomyces astaci] >gi|574102296|gb|ETV67849.1| hypothetical protein H257_16076 [Aphanomyces astaci])

HSP 1 Score: 83.5741 bits (205), Expect = 8.629e-15
Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
            +ASK VDF   W  I  +++ L SG   P +   W ++Y  VY ICT+P     G P A                L+ HL D L Q  + +   +L+A   H   +FL  Y   + +++ G     +L  YL+R+WI   H + G  P QGV  I EL   +WR
Sbjct:    4 LASKHVDFDIVWREIEPSVEVLVSGCHDPFSYDKWQSVYRGVYNICTNP-----GTPQAET--------------LFQHLRDVLVQRVENIA-EVLSA--EHGEAEFLGQYCSHFNMFSTGTSYVSELFCYLNRYWIRYAHSEYGQAPIQGVYPIPELALRIWR 145          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|673037290|ref|XP_008872606.1| (hypothetical protein H310_08576 [Aphanomyces invadans] >gi|574471402|gb|ETV98409.1| hypothetical protein H310_08576 [Aphanomyces invadans])

HSP 1 Score: 83.5741 bits (205), Expect = 1.040e-14
Identity = 51/164 (31.10%), Postives = 73/164 (44.51%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
            +ASK V+F   W  I  +++ L SG   P +   W ++Y  VY ICT+P     G P A                L+ HL D   Q    +   L+     H   QFL  Y   + +++ G     +L +YL+R+WI   H + G  P QGV  I EL   +WR
Sbjct:    4 LASKHVEFEVVWREIEPSVEVLVSGNHDPFSYDKWQSVYRGVYNICTNP-----GTPQAET--------------LFQHLRDVFVQRVSDIADVLMA---EHGEAQFLAQYCSHFNMFSTGTAYVSELFSYLNRYWIQYAHSEYGQAPIQGVYPIPELALRIWR 145          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|1173955598|gb|OQS02543.1| (Cullin family protein [Thraustotheca clavata])

HSP 1 Score: 83.1889 bits (204), Expect = 1.286e-14
Identity = 57/184 (30.98%), Postives = 84/184 (45.65%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDISNLLQRAFNAVV 233
            + SK VDF   WS I  +++ L +G   P +   W  +Y  VY ICT+P     G P A A              L+  L + L +    +V  L    ES  A +FL LY + + +Y+ G     +L AYL+R+WI   H + G  P  GV  + EL   +WR  V     + +  R  NA++
Sbjct:    4 LKSKPVDFETLWSEIEPSVEVLVNGTHRPFSYEKWQGVYRGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIVEIL--QGESGDA-EFLELYCNHFNIYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWRDIVH----TTMQHRVVNALL 161          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|813181584|ref|XP_012206145.1| (hypothetical protein SPRG_10002 [Saprolegnia parasitica CBS 223.65] >gi|641528996|gb|KDO23194.1| hypothetical protein SPRG_10002 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 82.8037 bits (203), Expect = 1.636e-14
Identity = 61/190 (32.11%), Postives = 85/190 (44.74%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVLRRDI--SNLLQRAFNAVVADLR 237
            + SK VDF   W+ I  +++ L +G   P +   W  +Y  VY ICT+P     G P A A              L+  L + L +    +V  LLTA       +FL LY   + +Y+ G     +L AYL+R+WI   H + G  P  GV  + EL   +W      RDI  S L  R  NA+V   R
Sbjct:    4 LKSKPVDFDMVWNEIEPSVEVLVNGSHAPFSNEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIV-ELLTAEPGDA--EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIW------RDIAHSALKHRVVNALVHIFR 165          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|298710078|emb|CBJ31794.1| (similar to Cullin-1 (CUL-1) isoform 1 [Ectocarpus siliculosus])

HSP 1 Score: 82.0333 bits (201), Expect = 2.857e-14
Identity = 50/172 (29.07%), Postives = 80/172 (46.51%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTS--GEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLT--AAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWRQRVL 217
            +  + +DF   W  + ++L  +    G+G P     W++LYT VY++CT P       P               H +LY  L + L  +   V+  LL    A +H+  + L  Y   +  Y+ GM  G     YLDR WI  +H + G+ P +GV F+ E+  +VW++RV 
Sbjct:    4 LTPEPIDFDDTWVLLESSLITILQDLGQGFP--NDLWISLYTGVYKLCTKPM-----DPQ--------------HSKLYARLKETLELYVAGVLKGLLAFDNATAHSYTELLVRYRTSFHNYSVGMHYGSDWFKYLDRHWINTNHCETGVSPKEGVYFVREMSLMVWKERVF 154          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|669141620|ref|XP_008606372.1| (hypothetical protein SDRG_02555 [Saprolegnia diclina VS20] >gi|530741656|gb|EQC39898.1| hypothetical protein SDRG_02555 [Saprolegnia diclina VS20])

HSP 1 Score: 79.337 bits (194), Expect = 2.444e-13
Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
            + SK VDF   W+ I  +++ L +G   P +   W  +Y  VY ICT+P     G P A A              L+  L + L +    +V  LLTA       +FL LY   + +Y+ G     +L AYL+R+WI   H + G  P  GV  + EL   +WR
Sbjct:    4 LKSKPVDFDMVWNEIEPSVEVLVNGSHAPFSYEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIV-ELLTAEPGDA--EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWR 145          
BLAST of EWM21899.1 vs. NCBI_GenBank
Match: gi|669141622|ref|XP_008606373.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530741657|gb|EQC39899.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 79.337 bits (194), Expect = 2.631e-13
Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 0
Query:   50 MASKAVDFSAAWSRIHATLDGLTSGEGLPAAEASWLALYTDVYRICTSPPVGGLGGPPAAAGAGIAGSGGGVHRRLYDHLHDFLHQHCDAVVVRLLTAAESHTAFQFLTLYADFYTLYTKGMETGGKLLAYLDRFWITKHHHKKGIDPSQGVMFIAELVPLVWR 213
            + SK VDF   W+ I  +++ L +G   P +   W  +Y  VY ICT+P     G P A A              L+  L + L +    +V  LLTA       +FL LY   + +Y+ G     +L AYL+R+WI   H + G  P  GV  + EL   +WR
Sbjct:    4 LKSKPVDFDMVWNEIEPSVEVLVNGSHAPFSYEKWQGVYHGVYSICTNP-----GAPQAEA--------------LFFQLREILVRRVTEIV-ELLTAEPGDA--EFLALYCSHFNVYSTGSNYVSELFAYLNRYWIRYAHSEYGQAPIPGVYPVPELALRIWR 145          
The following BLAST results are available for this feature:
BLAST of EWM21899.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102245|gb|EWM21899.1|2.819e-178100.00cullin family, partial [Nannochloropsis gaditana][more]
gi|553191734|ref|XP_005855442.1|5.189e-17699.18cul2 protein, partial [Nannochloropsis gaditana CC... [more]
gi|1173934843|gb|OQR86063.1|5.665e-1633.33Cullin family protein [Achlya hypogyna][more]
gi|698819357|ref|XP_009842707.1|8.629e-1532.32hypothetical protein H257_16076 [Aphanomyces astac... [more]
gi|673037290|ref|XP_008872606.1|1.040e-1431.10hypothetical protein H310_08576 [Aphanomyces invad... [more]
gi|1173955598|gb|OQS02543.1|1.286e-1430.98Cullin family protein [Thraustotheca clavata][more]
gi|813181584|ref|XP_012206145.1|1.636e-1432.11hypothetical protein SPRG_10002 [Saprolegnia paras... [more]
gi|298710078|emb|CBJ31794.1|2.857e-1429.07similar to Cullin-1 (CUL-1) isoform 1 [Ectocarpus ... [more]
gi|669141620|ref|XP_008606372.1|2.444e-1331.71hypothetical protein SDRG_02555 [Saprolegnia dicli... [more]
gi|669141622|ref|XP_008606373.1|2.631e-1331.71hypothetical protein, variant [Saprolegnia diclina... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8776rna8776Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications