EWM21931.1, cds8738 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|585102278|gb|EWM21931.1| (nifu like protein [Nannochloropsis gaditana]) HSP 1 Score: 503.056 bits (1294), Expect = 3.958e-180 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query: 1 MLTSRFSPARRMSRGRGQRGQNAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTDQVS 248
MLTSRFSPARRMSRGRGQRGQNAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTDQVS
Sbjct: 1 MLTSRFSPARRMSRGRGQRGQNAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTDQVS 248
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|219120702|ref|XP_002181084.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407800|gb|EEC47736.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 246.128 bits (627), Expect = 6.804e-79 Identity = 130/234 (55.56%), Postives = 162/234 (69.23%), Query Frame = 0
Query: 22 NAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDD------------GPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
+AFL+ L +A +F+P + R +TL+ D I SPF+S + G GPL LT +NVE VLDEMRPYL+ DGGNV++SDIDGPVVKLELQGACG+CPSST TMKMGLER L+EKIPEI EVIQAMPEGP L++E +D VL+GVRPFL VAGGSI++ I G+ GLQP + L MEG++ SL SV++EI QR+LR+FMV GL+V+W
Sbjct: 2 KTTAAFLSLYGLS--MASSFVPTAY---RHPKTVGTTLL-------RDQIVSPFDSSERDEGSVATTELDAPPTKLVGPLDLTWDNVEAVLDEMRPYLIQDGGNVIISDIDGPVVKLELQGACGTCPSSTQTMKMGLERGLREKIPEIQEVIQAMPEGPELTSEQVDVVLDGVRPFLQVAGGSINMDRIDGVDGLQPTIWLKMEGSSASLNSVKLEIAQRLLRHFMVAGLQVQW 223
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|1210522877|dbj|GAX18347.1| (hypothetical protein FisN_23Hh241 [Fistulifera solaris]) HSP 1 Score: 236.113 bits (601), Expect = 5.231e-75 Identity = 114/178 (64.04%), Postives = 138/178 (77.53%), Query Frame = 0
Query: 71 ITSPFE-----SGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
I SPF+ S + DDGPL LT ENVE+VLD MR YL+ DGGNVV+S+IDGPVV+LELQGACG+CPSST TMKMGLER LKE+IPEI EV+Q MPEGP L+ E I+ VL+GVRPFL VAGGSI + I G GLQP + L+M G++ SL SV++EI QR+ R+FM+ GLR+EW
Sbjct: 40 IISPFDDSDNKSASTKTATDDGPLDLTWENVELVLDSMRSYLIQDGGNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELTDEQINVVLDGVRPFLQVAGGSIDIDRIEGKDGLQPAIFLNMRGSSASLNSVKLEIAQRLQRHFMMAGLRIEW 217
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|1210524543|dbj|GAX16630.1| (hypothetical protein FisN_23Lh241 [Fistulifera solaris]) HSP 1 Score: 228.024 bits (580), Expect = 9.177e-72 Identity = 108/160 (67.50%), Postives = 130/160 (81.25%), Query Frame = 0
Query: 85 DDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWT 244
D GPL LT ENVE+VLD MR YL+ DGGNVV+S+IDGPVV+LELQGACG+CPSST TMKMGLER LKE+IPEI EV+Q MPEGP L+ E I+ VL+GVRPFL VAGGSI + I G GLQP + L+M G++ SL SV++EI QR+ R+FM+ GLR+EW
Sbjct: 64 DKGPLDLTWENVELVLDSMRSYLIQDGGNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELTDEQINVVLDGVRPFLQVAGGSIDIDRIEGKDGLQPAIFLNMRGSSASLNSVKLEIAQRLQRHFMMAGLRIEWV 223
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|223993177|ref|XP_002286272.1| (nifU like protein [Thalassiosira pseudonana CCMP1335] >gi|220977587|gb|EED95913.1| nifU like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 228.409 bits (581), Expect = 1.064e-71 Identity = 112/188 (59.57%), Postives = 141/188 (75.00%), Query Frame = 0
Query: 70 TITSPFES---------GVKQG-----GGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
TI SPF++ GV G DD PL LT ENV+MVL+EMRP+L+ DGGNV +S+IDGP+VKLELQGACG+CPSST TMKMGLER+L+E+IPEI EVIQA+P+ P L+ + I+ VL+ VRPFL VAGG+I V I+G GGLQP + L M G+ SL SV++EI QR+ R+FM+ G+RVEW
Sbjct: 49 TIVSPFDNTEDSDESGEGVATATYTSLGSDDEPLDLTWENVDMVLEEMRPFLLQDGGNVAISEIDGPIVKLELQGACGTCPSSTQTMKMGLERKLRERIPEIQEVIQALPDTPDLNEDQINIVLDSVRPFLQVAGGTIDVASITGEGGLQPTITLKMGGSAASLNSVKLEIAQRLQRHFMISGMRVEW 236
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|298708751|emb|CBJ30713.1| (NifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V) [Ectocarpus siliculosus]) HSP 1 Score: 228.409 bits (581), Expect = 3.503e-71 Identity = 114/184 (61.96%), Postives = 144/184 (78.26%), Query Frame = 0
Query: 65 RTSTDTITSPFESGVKQGGGDDGPLP-----LTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
R S+ I SPF + GD+ P LTLENVE VLDEMRPYLMSDGGNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+ EN+++VL+GVRPFL VAGGSI+++ ++G+ +QP++ L M G++ SL S+RMEI QRI R FM+ LRVE+
Sbjct: 91 RMSSTDIESPFATPGMADMGDEEEDPEALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 274
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|397620240|gb|EJK65619.1| (hypothetical protein THAOC_13500 [Thalassiosira oceanica]) HSP 1 Score: 223.016 bits (567), Expect = 9.947e-70 Identity = 108/186 (58.06%), Postives = 138/186 (74.19%), Query Frame = 0
Query: 71 ITSPFESGVKQGG-------------GDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
I SPF+ + G GD+ PL LT +NV+MVLDEMRPYL+ DGGNV +S+IDGPVV+LELQG CG+CPSST TMKMGLER+L E+IPEI EV+QA+P+ P L+ + I+ VL+ VRPFL VAGG+I + ISG GGLQP + L M+G+ SL SV++EI QR+ R+FM+ G+RVEW
Sbjct: 42 IVSPFDDSDDEAGEVATATYTPLPTEGDE-PLDLTWDNVDMVLDEMRPYLLQDGGNVAISEIDGPVVRLELQGECGTCPSSTQTMKMGLERKLMERIPEIQEVVQALPDSPDLTEDQINVVLDSVRPFLSVAGGTIDIDSISGEGGLQPTITLKMDGSAASLNSVKLEIAQRLQRHFMISGMRVEW 226
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|551665287|ref|XP_005835406.1| (lysyl-tRNA synthetase [Guillardia theta CCMP2712] >gi|428179555|gb|EKX48426.1| lysyl-tRNA synthetase [Guillardia theta CCMP2712]) HSP 1 Score: 224.942 bits (572), Expect = 5.159e-66 Identity = 112/193 (58.03%), Postives = 149/193 (77.20%), Query Frame = 0
Query: 63 LSRTSTDTITSPFESGV--------KQGGGD-DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPE-GPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTD 245
L+ TD+I SPF+ V ++ D DGPLPLT ENVE VLD MRPYLMSDGGNV ++DIDG +V+L+L+GACG+CPSSTMTMKMGLER L+EKIPEI +V+Q + + GP LS +++++VL+ VRPFL VAGGSI + ++ G+GG+QP+++L M G + +L SV+ EI QR+ RNFM+ GLR+EWTD
Sbjct: 447 LALKDTDSIVSPFDPSVDPLLPKETEESPTDLDGPLPLTWENVEKVLDTMRPYLMSDGGNVKIADIDGGIVRLKLEGACGTCPSSTMTMKMGLERGLREKIPEIVDVVQDLGDGGPELSPDSVEKVLDTVRPFLKVAGGSIELFDLRGVGGMQPVIILKMTGTSAALRSVKNEIVQRLQRNFMLAGLRIEWTD 639
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|551554609|ref|XP_005764537.1| (hypothetical protein EMIHUDRAFT_452262 [Emiliania huxleyi CCMP1516] >gi|485614252|gb|EOD12108.1| hypothetical protein EMIHUDRAFT_452262 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 191.43 bits (485), Expect = 1.829e-57 Identity = 98/168 (58.33%), Postives = 122/168 (72.62%), Query Frame = 0
Query: 68 TDTITSPFESGVKQGGGD-DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNF 234
+D +TSPFE+ GG GPLPLT ENV+ VLDEMRPYLM+DGGNV V++IDG VV+LELQGACGSC SS MTMKMGLER L+EKIPEI V Q P+GP L+ + I+ VLE +RPFL +AGG + + E+ G+ P L + G+ ++ SVR EI QR+ RNF
Sbjct: 45 SDPVTSPFEASASNGGETLTGPLPLTAENVDAVLDEMRPYLMADGGNVAVAEIDGGVVRLELQGACGSCASSAMTMKMGLERGLREKIPEIIAVEQVAPDGPQLTEDGIEGVLEEIRPFLKMAGGDVELVELIET-GVAPSCTLRISGSGSTINSVRAEIAQRLKRNF 211
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|922869132|gb|KOO35339.1| (nifu-like protein chloroplastic-like protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 176.407 bits (446), Expect = 1.989e-51 Identity = 108/231 (46.75%), Postives = 137/231 (59.31%), Query Frame = 0
Query: 34 FPLLAHAFL------PATFKPFRA-YSDASSTLVV---PLSRTSTDTITSPF----------ESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGL-RVEW 243
PLLA L P +P R+ + A+ T+ PL + + + SPF + G GPL LTL NVE+VLDEMRPYL++DGGNV V I+G VVKLELQGACGSCPSSTMTMKMGLER L E+ P I V Q EGP L I+ VL+ +RPFL + GG++ ++ + G GLQP L + G+ ++ SVR+EI QR+ R F P L VEW
Sbjct: 5 LPLLAMGALVLSSSRPVLTRPSRSELASAAITMRTHRHPLLCATKEAVVSPFVEAAPAKDAAAAPAAPNGSKTGPLELTLPNVELVLDEMRPYLIADGGNVAVRSIEGGVVKLELQGACGSCPSSTMTMKMGLERGLLERFPTIVSVEQVAQEGPVLDEAGIEAVLQEIRPFLKMTGGTVELRSLQG-DGLQPTARLSITGSGATINSVRVEIAQRLKRKF--PTLANVEW 232 The following BLAST results are available for this feature:
BLAST of EWM21931.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|