EWM21931.1, cds8738 (CDS) Nannochloropsis gaditana

Overview
NameEWM21931.1
Unique Namecds8738
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:121230..121472 -
Alignment locationKK037250.1:121021..121109 -
Alignment locationKK037250.1:120743..120887 -
Alignment locationKK037250.1:120353..120622 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21931.1
Productnifu like protein
Orig transcript idgnl|cribi|Naga_100220g8.7206.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:121230..121472 -
KK037250.1supercontigKK037250.1:121021..121109 -
KK037250.1supercontigKK037250.1:120743..120887 -
KK037250.1supercontigKK037250.1:120353..120622 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0016226iron-sulfur cluster assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0005506iron ion binding
GO:0051536iron-sulfur cluster binding
Vocabulary: INTERPRO
TermDefinition
IPR001075NIF_FeS_clus_asmbl_NifU_C
Homology
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|585102278|gb|EWM21931.1| (nifu like protein [Nannochloropsis gaditana])

HSP 1 Score: 503.056 bits (1294), Expect = 3.958e-180
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MLTSRFSPARRMSRGRGQRGQNAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTDQVS 248
            MLTSRFSPARRMSRGRGQRGQNAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTDQVS
Sbjct:    1 MLTSRFSPARRMSRGRGQRGQNAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTDQVS 248          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|219120702|ref|XP_002181084.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407800|gb|EEC47736.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 246.128 bits (627), Expect = 6.804e-79
Identity = 130/234 (55.56%), Postives = 162/234 (69.23%), Query Frame = 0
Query:   22 NAASAFLTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDD------------GPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
               +AFL+   L   +A +F+P  +   R      +TL+        D I SPF+S  +  G               GPL LT +NVE VLDEMRPYL+ DGGNV++SDIDGPVVKLELQGACG+CPSST TMKMGLER L+EKIPEI EVIQAMPEGP L++E +D VL+GVRPFL VAGGSI++  I G+ GLQP + L MEG++ SL SV++EI QR+LR+FMV GL+V+W
Sbjct:    2 KTTAAFLSLYGLS--MASSFVPTAY---RHPKTVGTTLL-------RDQIVSPFDSSERDEGSVATTELDAPPTKLVGPLDLTWDNVEAVLDEMRPYLIQDGGNVIISDIDGPVVKLELQGACGTCPSSTQTMKMGLERGLREKIPEIQEVIQAMPEGPELTSEQVDVVLDGVRPFLQVAGGSINMDRIDGVDGLQPTIWLKMEGSSASLNSVKLEIAQRLLRHFMVAGLQVQW 223          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|1210522877|dbj|GAX18347.1| (hypothetical protein FisN_23Hh241 [Fistulifera solaris])

HSP 1 Score: 236.113 bits (601), Expect = 5.231e-75
Identity = 114/178 (64.04%), Postives = 138/178 (77.53%), Query Frame = 0
Query:   71 ITSPFE-----SGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
            I SPF+     S   +   DDGPL LT ENVE+VLD MR YL+ DGGNVV+S+IDGPVV+LELQGACG+CPSST TMKMGLER LKE+IPEI EV+Q MPEGP L+ E I+ VL+GVRPFL VAGGSI +  I G  GLQP + L+M G++ SL SV++EI QR+ R+FM+ GLR+EW
Sbjct:   40 IISPFDDSDNKSASTKTATDDGPLDLTWENVELVLDSMRSYLIQDGGNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELTDEQINVVLDGVRPFLQVAGGSIDIDRIEGKDGLQPAIFLNMRGSSASLNSVKLEIAQRLQRHFMMAGLRIEW 217          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|1210524543|dbj|GAX16630.1| (hypothetical protein FisN_23Lh241 [Fistulifera solaris])

HSP 1 Score: 228.024 bits (580), Expect = 9.177e-72
Identity = 108/160 (67.50%), Postives = 130/160 (81.25%), Query Frame = 0
Query:   85 DDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWT 244
            D GPL LT ENVE+VLD MR YL+ DGGNVV+S+IDGPVV+LELQGACG+CPSST TMKMGLER LKE+IPEI EV+Q MPEGP L+ E I+ VL+GVRPFL VAGGSI +  I G  GLQP + L+M G++ SL SV++EI QR+ R+FM+ GLR+EW 
Sbjct:   64 DKGPLDLTWENVELVLDSMRSYLIQDGGNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELTDEQINVVLDGVRPFLQVAGGSIDIDRIEGKDGLQPAIFLNMRGSSASLNSVKLEIAQRLQRHFMMAGLRIEWV 223          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|223993177|ref|XP_002286272.1| (nifU like protein [Thalassiosira pseudonana CCMP1335] >gi|220977587|gb|EED95913.1| nifU like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 228.409 bits (581), Expect = 1.064e-71
Identity = 112/188 (59.57%), Postives = 141/188 (75.00%), Query Frame = 0
Query:   70 TITSPFES---------GVKQG-----GGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
            TI SPF++         GV        G DD PL LT ENV+MVL+EMRP+L+ DGGNV +S+IDGP+VKLELQGACG+CPSST TMKMGLER+L+E+IPEI EVIQA+P+ P L+ + I+ VL+ VRPFL VAGG+I V  I+G GGLQP + L M G+  SL SV++EI QR+ R+FM+ G+RVEW
Sbjct:   49 TIVSPFDNTEDSDESGEGVATATYTSLGSDDEPLDLTWENVDMVLEEMRPFLLQDGGNVAISEIDGPIVKLELQGACGTCPSSTQTMKMGLERKLRERIPEIQEVIQALPDTPDLNEDQINIVLDSVRPFLQVAGGTIDVASITGEGGLQPTITLKMGGSAASLNSVKLEIAQRLQRHFMISGMRVEW 236          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|298708751|emb|CBJ30713.1| (NifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V) [Ectocarpus siliculosus])

HSP 1 Score: 228.409 bits (581), Expect = 3.503e-71
Identity = 114/184 (61.96%), Postives = 144/184 (78.26%), Query Frame = 0
Query:   65 RTSTDTITSPFESGVKQGGGDDGPLP-----LTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
            R S+  I SPF +      GD+   P     LTLENVE VLDEMRPYLMSDGGNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+ EN+++VL+GVRPFL VAGGSI+++ ++G+  +QP++ L M G++ SL S+RMEI QRI R FM+  LRVE+
Sbjct:   91 RMSSTDIESPFATPGMADMGDEEEDPEALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 274          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|397620240|gb|EJK65619.1| (hypothetical protein THAOC_13500 [Thalassiosira oceanica])

HSP 1 Score: 223.016 bits (567), Expect = 9.947e-70
Identity = 108/186 (58.06%), Postives = 138/186 (74.19%), Query Frame = 0
Query:   71 ITSPFESGVKQGG-------------GDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEW 243
            I SPF+    + G             GD+ PL LT +NV+MVLDEMRPYL+ DGGNV +S+IDGPVV+LELQG CG+CPSST TMKMGLER+L E+IPEI EV+QA+P+ P L+ + I+ VL+ VRPFL VAGG+I +  ISG GGLQP + L M+G+  SL SV++EI QR+ R+FM+ G+RVEW
Sbjct:   42 IVSPFDDSDDEAGEVATATYTPLPTEGDE-PLDLTWDNVDMVLDEMRPYLLQDGGNVAISEIDGPVVRLELQGECGTCPSSTQTMKMGLERKLMERIPEIQEVVQALPDSPDLTEDQINVVLDSVRPFLSVAGGTIDIDSISGEGGLQPTITLKMDGSAASLNSVKLEIAQRLQRHFMISGMRVEW 226          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|551665287|ref|XP_005835406.1| (lysyl-tRNA synthetase [Guillardia theta CCMP2712] >gi|428179555|gb|EKX48426.1| lysyl-tRNA synthetase [Guillardia theta CCMP2712])

HSP 1 Score: 224.942 bits (572), Expect = 5.159e-66
Identity = 112/193 (58.03%), Postives = 149/193 (77.20%), Query Frame = 0
Query:   63 LSRTSTDTITSPFESGV--------KQGGGD-DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPE-GPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTD 245
            L+   TD+I SPF+  V        ++   D DGPLPLT ENVE VLD MRPYLMSDGGNV ++DIDG +V+L+L+GACG+CPSSTMTMKMGLER L+EKIPEI +V+Q + + GP LS +++++VL+ VRPFL VAGGSI + ++ G+GG+QP+++L M G + +L SV+ EI QR+ RNFM+ GLR+EWTD
Sbjct:  447 LALKDTDSIVSPFDPSVDPLLPKETEESPTDLDGPLPLTWENVEKVLDTMRPYLMSDGGNVKIADIDGGIVRLKLEGACGTCPSSTMTMKMGLERGLREKIPEIVDVVQDLGDGGPELSPDSVEKVLDTVRPFLKVAGGSIELFDLRGVGGMQPVIILKMTGTSAALRSVKNEIVQRLQRNFMLAGLRIEWTD 639          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|551554609|ref|XP_005764537.1| (hypothetical protein EMIHUDRAFT_452262 [Emiliania huxleyi CCMP1516] >gi|485614252|gb|EOD12108.1| hypothetical protein EMIHUDRAFT_452262 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 191.43 bits (485), Expect = 1.829e-57
Identity = 98/168 (58.33%), Postives = 122/168 (72.62%), Query Frame = 0
Query:   68 TDTITSPFESGVKQGGGD-DGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNF 234
            +D +TSPFE+    GG    GPLPLT ENV+ VLDEMRPYLM+DGGNV V++IDG VV+LELQGACGSC SS MTMKMGLER L+EKIPEI  V Q  P+GP L+ + I+ VLE +RPFL +AGG + + E+    G+ P   L + G+  ++ SVR EI QR+ RNF
Sbjct:   45 SDPVTSPFEASASNGGETLTGPLPLTAENVDAVLDEMRPYLMADGGNVAVAEIDGGVVRLELQGACGSCASSAMTMKMGLERGLREKIPEIIAVEQVAPDGPQLTEDGIEGVLEEIRPFLKMAGGDVELVELIET-GVAPSCTLRISGSGSTINSVRAEIAQRLKRNF 211          
BLAST of EWM21931.1 vs. NCBI_GenBank
Match: gi|922869132|gb|KOO35339.1| (nifu-like protein chloroplastic-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 176.407 bits (446), Expect = 1.989e-51
Identity = 108/231 (46.75%), Postives = 137/231 (59.31%), Query Frame = 0
Query:   34 FPLLAHAFL------PATFKPFRA-YSDASSTLVV---PLSRTSTDTITSPF----------ESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGL-RVEW 243
             PLLA   L      P   +P R+  + A+ T+     PL   + + + SPF           +     G   GPL LTL NVE+VLDEMRPYL++DGGNV V  I+G VVKLELQGACGSCPSSTMTMKMGLER L E+ P I  V Q   EGP L    I+ VL+ +RPFL + GG++ ++ + G  GLQP   L + G+  ++ SVR+EI QR+ R F  P L  VEW
Sbjct:    5 LPLLAMGALVLSSSRPVLTRPSRSELASAAITMRTHRHPLLCATKEAVVSPFVEAAPAKDAAAAPAAPNGSKTGPLELTLPNVELVLDEMRPYLIADGGNVAVRSIEGGVVKLELQGACGSCPSSTMTMKMGLERGLLERFPTIVSVEQVAQEGPVLDEAGIEAVLQEIRPFLKMTGGTVELRSLQG-DGLQPTARLSITGSGATINSVRVEIAQRLKRKF--PTLANVEW 232          
The following BLAST results are available for this feature:
BLAST of EWM21931.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102278|gb|EWM21931.1|3.958e-180100.00nifu like protein [Nannochloropsis gaditana][more]
gi|219120702|ref|XP_002181084.1|6.804e-7955.56predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210522877|dbj|GAX18347.1|5.231e-7564.04hypothetical protein FisN_23Hh241 [Fistulifera sol... [more]
gi|1210524543|dbj|GAX16630.1|9.177e-7267.50hypothetical protein FisN_23Lh241 [Fistulifera sol... [more]
gi|223993177|ref|XP_002286272.1|1.064e-7159.57nifU like protein [Thalassiosira pseudonana CCMP13... [more]
gi|298708751|emb|CBJ30713.1|3.503e-7161.96NifU-like protein 2, chloroplast precursor (AtCNfu... [more]
gi|397620240|gb|EJK65619.1|9.947e-7058.06hypothetical protein THAOC_13500 [Thalassiosira oc... [more]
gi|551665287|ref|XP_005835406.1|5.159e-6658.03lysyl-tRNA synthetase [Guillardia theta CCMP2712] ... [more]
gi|551554609|ref|XP_005764537.1|1.829e-5758.33hypothetical protein EMIHUDRAFT_452262 [Emiliania ... [more]
gi|922869132|gb|KOO35339.1|1.989e-5146.75nifu-like protein chloroplastic-like protein [Chry... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8768rna8768Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications