EWM21965.1, cds8707 (CDS) Nannochloropsis gaditana

Overview
NameEWM21965.1
Unique Namecds8707
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:42409..44046 +

Link to JBrowse

Properties
Property NameValue
Start range42409
Start range.
Protein idEWM21965.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100823g2.4719.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:42409..44046 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21965.1 vs. NCBI_GenBank
Match: gi|585102329|gb|EWM21965.1| (hypothetical protein Naga_100823g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 1054.28 bits (2725), Expect = 0.000e+0
Identity = 545/545 (100.00%), Postives = 545/545 (100.00%), Query Frame = 0 
Query:    1 EELLRSLWWVVAALELKQEGGREGGEEGGREGGREGVALQECSLAQLASLLGEATLLHLPEGGQGGREGGRETMRRMNLRTLTRGGTLRNLLPLTGRVPNEGGREGGREGKKDGLVEMTMGAPGTSLASQFQEALQQQQQQPQQPQQQQQLHEVFEADATSHLVLLTGWMERVHAGGQDEAGKGKERERRPPLWGGRVREREGGKEEKEKKGPGGVTGALTAILSTVGGAGGGKGGTGEGGHGEGRDGGDSGTRSPAMPLVAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRRSPHTESAPPKEEEEGGDEGEGEAEGGERGGRSLLGKEGEGLIRQRFTKAASVGSRHPPAARQSPSQPDTPLLSVHFRSYTGSPEGGKAGGLGGGAGALKPRRSLSHAAGGQHHRTIGGYNLVDPLPFDRSGEKGNPEEDVAEEQPPWQEAEEESGLRMRRRRPSPPLGIVGAPMALYGNSPLAGSAGGFESSELRRRNSASSDQGREGDGRGNRDGGGDMDAAESTEIRLSRSLSKSGGSKGV 545
            EELLRSLWWVVAALELKQEGGREGGEEGGREGGREGVALQECSLAQLASLLGEATLLHLPEGGQGGREGGRETMRRMNLRTLTRGGTLRNLLPLTGRVPNEGGREGGREGKKDGLVEMTMGAPGTSLASQFQEALQQQQQQPQQPQQQQQLHEVFEADATSHLVLLTGWMERVHAGGQDEAGKGKERERRPPLWGGRVREREGGKEEKEKKGPGGVTGALTAILSTVGGAGGGKGGTGEGGHGEGRDGGDSGTRSPAMPLVAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRRSPHTESAPPKEEEEGGDEGEGEAEGGERGGRSLLGKEGEGLIRQRFTKAASVGSRHPPAARQSPSQPDTPLLSVHFRSYTGSPEGGKAGGLGGGAGALKPRRSLSHAAGGQHHRTIGGYNLVDPLPFDRSGEKGNPEEDVAEEQPPWQEAEEESGLRMRRRRPSPPLGIVGAPMALYGNSPLAGSAGGFESSELRRRNSASSDQGREGDGRGNRDGGGDMDAAESTEIRLSRSLSKSGGSKGV
Sbjct:    1 EELLRSLWWVVAALELKQEGGREGGEEGGREGGREGVALQECSLAQLASLLGEATLLHLPEGGQGGREGGRETMRRMNLRTLTRGGTLRNLLPLTGRVPNEGGREGGREGKKDGLVEMTMGAPGTSLASQFQEALQQQQQQPQQPQQQQQLHEVFEADATSHLVLLTGWMERVHAGGQDEAGKGKERERRPPLWGGRVREREGGKEEKEKKGPGGVTGALTAILSTVGGAGGGKGGTGEGGHGEGRDGGDSGTRSPAMPLVAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRRSPHTESAPPKEEEEGGDEGEGEAEGGERGGRSLLGKEGEGLIRQRFTKAASVGSRHPPAARQSPSQPDTPLLSVHFRSYTGSPEGGKAGGLGGGAGALKPRRSLSHAAGGQHHRTIGGYNLVDPLPFDRSGEKGNPEEDVAEEQPPWQEAEEESGLRMRRRRPSPPLGIVGAPMALYGNSPLAGSAGGFESSELRRRNSASSDQGREGDGRGNRDGGGDMDAAESTEIRLSRSLSKSGGSKGV 545
[Close]
BLAST of EWM21965.1 vs. NCBI_GenBank
Match: gi|585102321|gb|EWM21960.1| (hypothetical protein Naga_101140g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 92.8189 bits (229), Expect = 1.572e-17
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0 
Query:  256 PAMPLVAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRR 302
            P+  L APPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRR
Sbjct:    7 PSTTLTAPPTVVVPYLPAGRYTLAPGTVAFVLPESKCRLVRQQVQRR 53
The following BLAST results are available for this feature:
BLAST of EWM21965.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102329|gb|EWM21965.1|0.000e+0100.00hypothetical protein Naga_100823g2, partial [Nanno... [more]
gi|585102321|gb|EWM21960.1|1.572e-1791.49hypothetical protein Naga_101140g4, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8736rna8736Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications