EWM21968.1, cds8704 (CDS) Nannochloropsis gaditana

Overview
NameEWM21968.1
Unique Namecds8704
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:32094..34496 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21968.1
Producthbs1-like protein
Orig transcript idgnl|cribi|Naga_100326g3.7806.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:32094..34496 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR009001Transl_elong_EF1A/Init_IF2_C
IPR027417P-loop_NTPase
IPR004160Transl_elong_EFTu/EF1A_C
IPR000795TF_GTP-bd_dom
Homology
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|585102333|gb|EWM21968.1| (hbs1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1613.2 bits (4176), Expect = 0.000e+0
Identity = 800/800 (100.00%), Postives = 800/800 (100.00%), Query Frame = 0
Query:    1 MSRHRAVRNRTYSYDDDYDDYGYEDEEEEEEEEGEGTYAYHRRQQLQGHLPSSHGASLSSLLDHAAAQHNAPVAPILRSSQAGPRAPAQEDVKGKGTHPRLATISEAFDADLVDPAFHMIKESGQVGEMSDDQIRTAVRQANYDADVALSALLLLPPSTPPATSSSSSSTPSSSQPPSAVPSRVVTPSPSRLSSPEDGGRGGKGRGLTAGTESTASLPPPLPPGQLVRPTPQRRSSGNLLLGNQSRNNSSSNLSRPTGSNVGEVEEVASRVQSVHLSRASPPPPRFKSVSPGLGEGEDGYEGAQAGAGNVIASRASLGGLSKDPEVWEEDVLPSKGGGEKEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAILPDA 800
            MSRHRAVRNRTYSYDDDYDDYGYEDEEEEEEEEGEGTYAYHRRQQLQGHLPSSHGASLSSLLDHAAAQHNAPVAPILRSSQAGPRAPAQEDVKGKGTHPRLATISEAFDADLVDPAFHMIKESGQVGEMSDDQIRTAVRQANYDADVALSALLLLPPSTPPATSSSSSSTPSSSQPPSAVPSRVVTPSPSRLSSPEDGGRGGKGRGLTAGTESTASLPPPLPPGQLVRPTPQRRSSGNLLLGNQSRNNSSSNLSRPTGSNVGEVEEVASRVQSVHLSRASPPPPRFKSVSPGLGEGEDGYEGAQAGAGNVIASRASLGGLSKDPEVWEEDVLPSKGGGEKEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAILPDA
Sbjct:    1 MSRHRAVRNRTYSYDDDYDDYGYEDEEEEEEEEGEGTYAYHRRQQLQGHLPSSHGASLSSLLDHAAAQHNAPVAPILRSSQAGPRAPAQEDVKGKGTHPRLATISEAFDADLVDPAFHMIKESGQVGEMSDDQIRTAVRQANYDADVALSALLLLPPSTPPATSSSSSSTPSSSQPPSAVPSRVVTPSPSRLSSPEDGGRGGKGRGLTAGTESTASLPPPLPPGQLVRPTPQRRSSGNLLLGNQSRNNSSSNLSRPTGSNVGEVEEVASRVQSVHLSRASPPPPRFKSVSPGLGEGEDGYEGAQAGAGNVIASRASLGGLSKDPEVWEEDVLPSKGGGEKEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAILPDA 800          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|553189419|ref|XP_005854998.1| (hbs1-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294063|gb|EKU21363.1| hbs1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 496.123 bits (1276), Expect = 7.663e-169
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:  554 REGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAILPDA 800
            REGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAILPDA
Sbjct:    1 REGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAILPDA 247          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|299116307|emb|CBN76113.1| (HBS1, eRF3-like GTPase involved in mRNA [Ectocarpus siliculosus])

HSP 1 Score: 446.432 bits (1147), Expect = 8.931e-142
Identity = 236/452 (52.21%), Postives = 310/452 (68.58%), Query Frame = 0
Query:  342 GEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVGVSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIV 793
            G K R+AMVVIGHVDAGKSTLMGQVLV  G V+ R   K E++AR  GKASF+LAW+MDED EERAHGVT+EV QK IE   ++VTLLDAPGH DF+P+MI GA+ AD A+LVVPA  GEFE+GF          + GQTKEHA+LA+ALGVNQLLV VNKLDA DPPWS+ARY+ +   + PFL +TGF+ +++RF+P SGL+ ENV +      +  GG L  WY GP+LL A+D F  A +    A  K  RM V D+  +GK V VS RV+ G +++G KV+++P+ D A    +E  G+PA  A A ++AE+TL GVDP+R+ +G+V+CK    +PV  RF AQI  L +L VPI++GT FQ+H+ +L++ V+ ++L +            A  V K RPRC+     A +   C RP+C+E++ D R LGRF+LRQKG TVAVG+V
Sbjct:  363 GGKERLAMVVIGHVDAGKSTLMGQVLVQMGQVTQRALHKQEKEAREAGKASFFLAWVMDEDQEERAHGVTIEVAQKHIETETKLVTLLDAPGHRDFIPKMISGASAADAAVLVVPAAVGEFESGFQ---------ANGQTKEHAMLAKALGVNQLLVVVNKLDATDPPWSEARYEAVKAEVGPFLARTGFRPKKVRFLPASGLSAENVSK------RTEGGPLSSWYDGPTLLEAIDSFQAAPR----ATDKAFRMCVADVTSSGKGVSVSGRVVQGRLRSGDKVVVMPLEDPATAARLERNGAPARTARAGDNAEVTLSGVDPSRVVVGNVVCKAGGVLPVVRRFNAQIVALPALEVPIIKGTEFQLHMHNLDVMVHCSKLVSLT--------NTAGTVLKARPRCVPTGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLV 787          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|1173950208|gb|OQR98185.1| (translation elongation factor 1-alpha [Achlya hypogyna])

HSP 1 Score: 400.593 bits (1028), Expect = 4.178e-126
Identity = 224/497 (45.07%), Postives = 310/497 (62.37%), Query Frame = 0
Query:  311 IASRASLGGLSKDP---EVWE--EDVLPSKGGGEKEGE---KARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLREWYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVG--VSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAIL 797
            +AS  SLGG S  P     +E  E     K  G    E   K +I+MVVIGHVDAGKST+ G +L S G VS +   K+E+ +R  GK+SF  AW+MD D EER  GVTM+VG    + P + VTLLDAPGH DF+P+MI GA+QADVA+LVVPA TGEFE  F         +  GQTKEH LL R+LGV QL+VAVNK+DA    WS+ R+  IV +LT FL+Q+GFK E++RFVPVSGL+G N+                 WYTGP+L+ A+D F P  + +     KP RM ++D++ +  ++G  VS R+ +G V TG  +L++P G    V+ +E  G    +A A ++ ++ + G+DP+ +S+G++LC   + + +  RF AQI T+ ++ VP+++G     HV S++ PVN TRL + L K        + EV+K++PRC+T N  A+V+  C RP+C+E F D R LGRF LR +G T+A GIVT IL
Sbjct:  159 VASATSLGGYSLTPLERAAFEKAEKASQDKCLGAMTAEADAKHKISMVVIGHVDAGKSTITGHLLFSLGYVSKQVMHKYEKQSREAGKSSFAFAWVMDADEEERLRGVTMDVGTSYFQTPTKHVTLLDAPGHRDFIPKMIAGASQADVAVLVVPAATGEFEGAF---------MKDGQTKEHTLLVRSLGVTQLIVAVNKMDAV--AWSKDRFDFIVETLTAFLQQSGFKLEQLRFVPVSGLSGGNLIAPLPAADC-------TWYTGPTLVGAIDGFYPPQRPIT----KPFRMGISDISKS-MSLGQTVSGRIYTGAVSTGDTLLLMPGGLRLTVKGMEQNGGSITMASAGDNVDLGVTGIDPSALSVGNILCSIASPIKLVRRFEAQIMTMPAVEVPLVKGAYMTFHVHSIDEPVNITRLVSILKK--------SGEVEKKKPRCITRNCSAVVQITCQRPICLELFADFRQLGRFTLRDRGSTLAAGIVTEIL 624          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|970643061|gb|KUF84470.1| (HBS1 protein [Phytophthora nicotianae])

HSP 1 Score: 398.667 bits (1023), Expect = 1.730e-125
Identity = 206/462 (44.59%), Postives = 302/462 (65.37%), Query Frame = 0
Query:  340 KEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLRE--WYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVG--VSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAIL 797
            + G K +I+MVVIGHVDAGKST+ G +L   G VS R   K+E+++R  GK+SF  AW+MD D EER+ GVTM+VG    E   + VTLLDAPGH DF+P+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VAVNK+D  +  W + R+ +IVTSL+ FL+  GF+ + +RFVP+SG+TG N+         E  GG++E  WY+GPSL+ A+D F P  + +     KP RM V+D++ +  ++G  +S RV +G    G   L++PIG    V+ +E +G    +A A +  E+ + G+DP+ ++ GS+LC   + V ++ +F A+I T+ ++ VP+++GT   +H+ +++ PVN TRL + L+K          EV+K++PRC+T    A+V+  C R +C+E F + R LGRF LR +G+T+A GI+T I+
Sbjct:  195 RTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANL---------EKTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSDVSKS-MSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 623          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|567955443|gb|ETK81076.1| (translation elongation factor Tu [Phytophthora parasitica] >gi|567984117|gb|ETL34494.1| translation elongation factor Tu [Phytophthora parasitica] >gi|570945496|gb|ETP10753.1| translation elongation factor Tu [Phytophthora parasitica CJ01A1])

HSP 1 Score: 399.053 bits (1024), Expect = 3.710e-125
Identity = 206/462 (44.59%), Postives = 302/462 (65.37%), Query Frame = 0
Query:  340 KEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLRE--WYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVG--VSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAIL 797
            + G K +I+MVVIGHVDAGKST+ G +L   G VS R   K+E+++R  GK+SF  AW+MD D EER+ GVTM+VG    E   + VTLLDAPGH DF+P+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VAVNK+D  +  W + R+ +IVTSL+ FL+  GF+ + +RFVP+SG+TG N+         E  GG++E  WY+GPSL+ A+D F P  + +     KP RM V+D++ +  ++G  +S RV +G    G   L++PIG    V+ +E +G    +A A +  E+ + G+DP+ ++ GS+LC   + V ++ +F A+I T+ ++ VP+++GT   +H+ +++ PVN TRL + L+K          EV+K++PRC+T    A+V+  C R +C+E F + R LGRF LR +G+T+A GI+T I+
Sbjct:  230 RTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANL---------EKTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSDVSKS-MSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 658          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|570321697|gb|ETO69645.1| (translation elongation factor Tu [Phytophthora parasitica P1976])

HSP 1 Score: 399.053 bits (1024), Expect = 4.172e-125
Identity = 206/462 (44.59%), Postives = 302/462 (65.37%), Query Frame = 0
Query:  340 KEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLRE--WYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVG--VSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAIL 797
            + G K +I+MVVIGHVDAGKST+ G +L   G VS R   K+E+++R  GK+SF  AW+MD D EER+ GVTM+VG    E   + VTLLDAPGH DF+P+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VAVNK+D  +  W + R+ +IVTSL+ FL+  GF+ + +RFVP+SG+TG N+         E  GG++E  WY+GPSL+ A+D F P  + +     KP RM V+D++ +  ++G  +S RV +G    G   L++PIG    V+ +E +G    +A A +  E+ + G+DP+ ++ GS+LC   + V ++ +F A+I T+ ++ VP+++GT   +H+ +++ PVN TRL + L+K          EV+K++PRC+T    A+V+  C R +C+E F + R LGRF LR +G+T+A GI+T I+
Sbjct:  230 RTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANL---------EKTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSDVSKS-MSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 658          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|566018061|gb|ETI40972.1| (translation elongation factor Tu [Phytophthora parasitica P1569] >gi|568013570|gb|ETL87747.1| translation elongation factor Tu [Phytophthora parasitica] >gi|570977251|gb|ETP38895.1| translation elongation factor Tu [Phytophthora parasitica P10297])

HSP 1 Score: 399.053 bits (1024), Expect = 4.353e-125
Identity = 206/462 (44.59%), Postives = 302/462 (65.37%), Query Frame = 0
Query:  340 KEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLRE--WYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVG--VSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAIL 797
            + G K +I+MVVIGHVDAGKST+ G +L   G VS R   K+E+++R  GK+SF  AW+MD D EER+ GVTM+VG    E   + VTLLDAPGH DF+P+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VAVNK+D  +  W + R+ +IVTSL+ FL+  GF+ + +RFVP+SG+TG N+         E  GG++E  WY+GPSL+ A+D F P  + +     KP RM V+D++ +  ++G  +S RV +G    G   L++PIG    V+ +E +G    +A A +  E+ + G+DP+ ++ GS+LC   + V ++ +F A+I T+ ++ VP+++GT   +H+ +++ PVN TRL + L+K          EV+K++PRC+T    A+V+  C R +C+E F + R LGRF LR +G+T+A GI+T I+
Sbjct:  230 RTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANL---------EKTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSDVSKS-MSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 658          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|568043723|gb|ETM40994.1| (translation elongation factor Tu [Phytophthora parasitica])

HSP 1 Score: 396.741 bits (1018), Expect = 1.179e-124
Identity = 206/462 (44.59%), Postives = 301/462 (65.15%), Query Frame = 0
Query:  340 KEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLRE--WYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVG--VSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAIL 797
            + G K +I+MVVIGHVDAGKST+ G +L   G VS R   K+E+++R  GK+SF  AW+MD D EER+ GVTM+VG    E   + VTLLDAPGH DF+P+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VAVNK+D  +  W + R+ +IVTSL+ FL+  GF+ + +RFVP+SG+TG N+         E  GG++E  WY+GPSL+ A+D F P  + +     KP RM V+D++ +  ++G  +S RV +G    G   L++PIG    V+ +E +G    +A A +  E+ + G+DP+ +  GS+LC   + V ++ +F A+I T+ ++ VP+++GT   +H+ +++ PVN TRL + L+K          EV+K++PRC+T    A+V+  C R +C+E F + R LGRF LR +G+T+A GI+T I+
Sbjct:  195 RTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANL---------EKTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSDVSKS-MSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALITGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 623          
BLAST of EWM21968.1 vs. NCBI_GenBank
Match: gi|675171449|ref|XP_008894609.1| (translation elongation factor Tu [Phytophthora parasitica INRA-310] >gi|568106111|gb|ETN20747.1| translation elongation factor Tu [Phytophthora parasitica INRA-310])

HSP 1 Score: 397.512 bits (1020), Expect = 1.445e-124
Identity = 206/462 (44.59%), Postives = 302/462 (65.37%), Query Frame = 0
Query:  340 KEGEKARIAMVVIGHVDAGKSTLMGQVLVSTGMVSVREARKFERDARALGKASFYLAWMMDEDGEERAHGVTMEVGQKCIELPHRVVTLLDAPGHADFVPQMIVGAAQADVALLVVPATTGEFEAGFAEAGTGRDGLSQGQTKEHALLARALGVNQLLVAVNKLDAADPPWSQARYQDIVTSLTPFLEQTGFKSERIRFVPVSGLTGENVKEGGREGGKEGGGGLRE--WYTGPSLLTAMDDFLPAAKFLREARGKPLRMIVNDLAPAGKNVG--VSVRVLSGGVKTGSKVLILPIGDVAVVRSIEVEGSPAEVAGALEHAEITLQGVDPARISIGSVLCKGKAAVPVSCRFAAQITTLSSLSVPILRGTPFQMHVQSLEIPVNATRLTATLAKPLSEEGRGAAEVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTAIL 797
            + G K +I+MVVIGHVDAGKST+ G +L   G VS R   K+E+++R  GK+SF  AW+MD D EER+ GVTM+VG    E   + VTLLDAPGH DF+P+MI GAAQADVA+LVVPA TGEFEA F  +         GQTKEH LL R+LGV+Q++VAVNK+D  +  W + R+ +IVTSL+ FL+  GF+ + +RFVP+SG+TG N+         E  GG++E  WY+GPSL+ A+D F P  + +     KP RM V+D++ +  ++G  +S RV +G    G   L++PIG    V+ +E +G    +A A +  E+ + G+DP+ ++ GS+LC   + V ++ +F A+I T+ ++ VP+++GT   +H+ +++ PVN TRL + L+K          EV+K++PRC+T    A+V+  C R +C+E F + R LGRF LR +G+T+A GI+T I+
Sbjct:  231 RTGGKTKISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSFAYAWVMDADDEERSRGVTMDVGTSHFETDTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENS---------GQTKEHTLLVRSLGVSQMVVAVNKMDMVN--WDKERFDNIVTSLSMFLQGAGFRPKNLRFVPLSGMTGANL---------EKTGGVKECSWYSGPSLVEAIDTFAPPQRQI----SKPFRMTVSDVSKS-MSLGQTISGRVYAGAAAVGDSFLLMPIGLTLTVKGMEQDGKSCTLARAGDTIEMGVTGIDPSALTTGSILCSIASPVQLAKKFEAKIMTMPAVEVPLVKGTYVTIHMHNVDEPVNITRLVSMLSK--------TGEVEKKKPRCITRERSAVVQITCHRKICLEEFANYRQLGRFTLRDRGKTLAAGIITQII 659          
The following BLAST results are available for this feature:
BLAST of EWM21968.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102333|gb|EWM21968.1|0.000e+0100.00hbs1-like protein [Nannochloropsis gaditana][more]
gi|553189419|ref|XP_005854998.1|7.663e-169100.00hbs1-like protein, partial [Nannochloropsis gadita... [more]
gi|299116307|emb|CBN76113.1|8.931e-14252.21HBS1, eRF3-like GTPase involved in mRNA [Ectocarpu... [more]
gi|1173950208|gb|OQR98185.1|4.178e-12645.07translation elongation factor 1-alpha [Achlya hypo... [more]
gi|970643061|gb|KUF84470.1|1.730e-12544.59HBS1 protein [Phytophthora nicotianae][more]
gi|567955443|gb|ETK81076.1|3.710e-12544.59translation elongation factor Tu [Phytophthora par... [more]
gi|570321697|gb|ETO69645.1|4.172e-12544.59translation elongation factor Tu [Phytophthora par... [more]
gi|566018061|gb|ETI40972.1|4.353e-12544.59translation elongation factor Tu [Phytophthora par... [more]
gi|568043723|gb|ETM40994.1|1.179e-12444.59translation elongation factor Tu [Phytophthora par... [more]
gi|675171449|ref|XP_008894609.1|1.445e-12444.59translation elongation factor Tu [Phytophthora par... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8733rna8733Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications