EWM21992.1, cds8680 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|585102381|gb|EWM21992.1| (abc transporter b family member 28 [Nannochloropsis gaditana]) HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query: 1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSIPSA 340
MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSIPSA
Sbjct: 1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSIPSA 340
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|585102380|gb|EWM21991.1| (abc transporter b family member 28 [Nannochloropsis gaditana]) HSP 1 Score: 664.07 bits (1712), Expect = 0.000e+0 Identity = 334/337 (99.11%), Postives = 335/337 (99.41%), Query Frame = 0
Query: 1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSI 337
MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATIT +
Sbjct: 1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITAQL 337
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|873218424|emb|CEM39524.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 104.375 bits (259), Expect = 5.835e-21 Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 0
Query: 169 RDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVA 331
R + +G + + + +V S+PL + V+NVLL PA PL E FTKA +L +Y EP T +Y+R T + + LK F ++ +++ FFDR GP + + L+ ++D L N+ R RG+RALL+ V+ +L P+L +F LVIP +A
Sbjct: 95 RRIVLGFLFAFVGSVVTCSLPLAFTNVLNVLLTPA--PLQE----FTKACAILGSLYVLEPICTLLYVRQATRVVQAYLNVLKATAFQSVVSRNIEFFDREGPSNVANLLTTSFGRVRDCLLANIDRQRGVRALLDCVIALSILISTAPQLAWLFGLVIPIMA 251
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|743828577|ref|XP_010933902.1| (PREDICTED: ABC transporter B family member 28 isoform X1 [Elaeis guineensis]) HSP 1 Score: 99.7525 bits (247), Expect = 2.289e-19 Identity = 76/217 (35.02%), Postives = 112/217 (51.61%), Query Frame = 0
Query: 119 ANPPPAIRPSTSPPPSSPPSLDASRQPTTPHD-LQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
A+ P AI SP S+P Q ++P + W S K +AI V T +S+PL G +L+ PL K L +A +Y+ EP LT V++ +MT ++ K + +L+ +F R+L Q V FFDR GE+T L+ D+ LKD++ N+ RDRGLRAL E V+GTI LLF L +L V L++ +V+ +
Sbjct: 75 ASDPDAIDRGASPEASAP-------QVSSPAAAISWGGIW----SLLLRHKLRMAISLASLVGCTCCTLSMPLFSGKFFEILIGRGSEPLW-------KLLSKIAVLYTLEPILTIVFVINMTIMWEKVMASLRGQIFRRILIQKVEFFDRYKVGELTGLLTSDLGSLKDVVSENISRDRGLRALSE-VIGTICLLFSLSTQLAPVLGLLMVSVSVL 272
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|1104661644|ref|XP_019081606.1| (PREDICTED: ABC transporter B family member 28 [Vitis vinifera] >gi|297741119|emb|CBI31850.3| unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 98.5969 bits (244), Expect = 4.897e-19 Identity = 77/233 (33.05%), Postives = 115/233 (49.36%), Query Frame = 0
Query: 109 AFLRRRGGTTANPP------PAIRPS-TSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
+ LR R PP PA P T P P S DA + P ++ +LR LA+ V + + +S+PL G VL+ PL + L + +Y+ EP LT +Y+ +M ++ K + L+ +F RLL Q V FFDR GE+T+ L+ D+ LKDI+ N+ RDRG RAL E V+GTI +LF L P+L + +++ TV+ +
Sbjct: 46 SLLRSRSKGVVRPPSAYVSGPASDPIITEPDPKVESSNDAHDETVEPPSAISSSLLWSLLMRYKLR---LAVSAVTLIGCSACTLSMPLFSGRFFEVLIGTRPEPLW-------RLLSTVGVLYTLEPVLTIIYVVNMNTIWEKVMSTLRAQIFRRLLIQKVEFFDRYKVGELTALLTSDLGSLKDIVSENISRDRGFRALSE-VIGTICILFTLAPQLAPILGILMLTVSVL 267
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|1052184927|ref|XP_008795363.2| (PREDICTED: ABC transporter B family member 28 [Phoenix dactylifera] >gi|1052184929|ref|XP_017699281.1| PREDICTED: ABC transporter B family member 28 [Phoenix dactylifera]) HSP 1 Score: 97.0561 bits (240), Expect = 1.546e-18 Identity = 73/221 (33.03%), Postives = 110/221 (49.77%), Query Frame = 0
Query: 130 SPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVL----------------ATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
S P S P ++D P P A P SP ++ GG+ S+L T +S+PL G +L+ PL K L +A +Y+ EP T +++ +MT ++ K + +L+ +F R+L Q V FFDR GE+T L+ D+ LKD++ N+ RDRGLRAL E V+GT+ LLF L +L V L++ +VA +
Sbjct: 73 SAPASDPDAIDRGASPEAP--------APPVSSPAAA----ISWGGIWSLLLRHKLRMAISLASLVGCTSCTLSMPLFSGKFFEILIGRGSEPLW-------KLLSKIAVLYTLEPIFTVIFVINMTIIWEKVMASLRGQIFRRILIQKVEFFDRHKVGELTGLLTSDLGSLKDVVSENISRDRGLRALSE-VIGTVCLLFALSTQLAPVLGLLMVSVAVL 273
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|970017202|ref|XP_015069728.1| (PREDICTED: ABC transporter B family member 28 isoform X2 [Solanum pennellii]) HSP 1 Score: 95.9005 bits (237), Expect = 4.091e-18 Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query: 179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
V+ T ++S+PL G VL+ PLLE L +A +Y+ EP T +Y+ ++T ++ K + +L+ +F R+L Q + FFDR GE+T+ L+ D+ LK+I+ N RDRG RAL E VVGT+ LLF L P+L + L+I V+ +
Sbjct: 121 VVCTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRGQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|970017200|ref|XP_015069727.1| (PREDICTED: ABC transporter B family member 28 isoform X1 [Solanum pennellii]) HSP 1 Score: 95.9005 bits (237), Expect = 4.305e-18 Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query: 179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
V+ T ++S+PL G VL+ PLLE L +A +Y+ EP T +Y+ ++T ++ K + +L+ +F R+L Q + FFDR GE+T+ L+ D+ LK+I+ N RDRG RAL E VVGT+ LLF L P+L + L+I V+ +
Sbjct: 121 VVCTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRGQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|970017204|ref|XP_015069729.1| (PREDICTED: ABC transporter B family member 28 isoform X3 [Solanum pennellii]) HSP 1 Score: 95.9005 bits (237), Expect = 4.586e-18 Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query: 179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
V+ T ++S+PL G VL+ PLLE L +A +Y+ EP T +Y+ ++T ++ K + +L+ +F R+L Q + FFDR GE+T+ L+ D+ LK+I+ N RDRG RAL E VVGT+ LLF L P+L + L+I V+ +
Sbjct: 121 VVCTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRGQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|1104613189|ref|XP_019068360.1| (PREDICTED: ABC transporter B family member 28 isoform X2 [Solanum lycopersicum]) HSP 1 Score: 95.5153 bits (236), Expect = 4.940e-18 Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query: 179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
V+ T ++S+PL G VL+ PLLE L +A +Y+ EP T +Y+ ++T ++ K + +L+ +F R+L Q + FFDR GE+T+ L+ D+ LK+I+ N RDRG RAL E VVGT+ LLF L P+L + L+I V+ +
Sbjct: 121 VICTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRAQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268 The following BLAST results are available for this feature:
BLAST of EWM21992.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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