EWM21992.1, cds8680 (CDS) Nannochloropsis gaditana

Overview
NameEWM21992.1
Unique Namecds8680
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:637455..637677 -
Alignment locationKK037249.1:636758..637182 -
Alignment locationKK037249.1:636300..636404 -
Alignment locationKK037249.1:636017..636122 -
Alignment locationKK037249.1:635643..635806 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21992.1
Productabc transporter b family member 28
Orig transcript idgnl|cribi|Naga_100670g3.7115.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:637455..637677 -
KK037249.1supercontigKK037249.1:636758..637182 -
KK037249.1supercontigKK037249.1:636300..636404 -
KK037249.1supercontigKK037249.1:636017..636122 -
KK037249.1supercontigKK037249.1:635643..635806 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0000166nucleotide binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011527ABC1_TM_dom
Homology
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|585102381|gb|EWM21992.1| (abc transporter b family member 28 [Nannochloropsis gaditana])

HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query:    1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSIPSA 340
            MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSIPSA
Sbjct:    1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSIPSA 340          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|585102380|gb|EWM21991.1| (abc transporter b family member 28 [Nannochloropsis gaditana])

HSP 1 Score: 664.07 bits (1712), Expect = 0.000e+0
Identity = 334/337 (99.11%), Postives = 335/337 (99.41%), Query Frame = 0
Query:    1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITVSI 337
            MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATIT  +
Sbjct:    1 MSLLSSRSLRWPVSSRALVFCLVLIFWADTIAYVLPLLRTLGTSTRSPPQKARLNMATPIHRPQKIALRSCFGSGYPPRSPRIPTLPTSAPRASIRRFSSMLASSFIPAFLRRRGGTTANPPPAIRPSTSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVATITAQL 337          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|873218424|emb|CEM39524.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 104.375 bits (259), Expect = 5.835e-21
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 0
Query:  169 RDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVA 331
            R + +G + + + +V   S+PL +  V+NVLL PA  PL E    FTKA  +L  +Y  EP  T +Y+R  T +    +  LK   F  ++ +++ FFDR GP  + + L+     ++D L  N+ R RG+RALL+ V+   +L    P+L  +F LVIP +A
Sbjct:   95 RRIVLGFLFAFVGSVVTCSLPLAFTNVLNVLLTPA--PLQE----FTKACAILGSLYVLEPICTLLYVRQATRVVQAYLNVLKATAFQSVVSRNIEFFDREGPSNVANLLTTSFGRVRDCLLANIDRQRGVRALLDCVIALSILISTAPQLAWLFGLVIPIMA 251          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|743828577|ref|XP_010933902.1| (PREDICTED: ABC transporter B family member 28 isoform X1 [Elaeis guineensis])

HSP 1 Score: 99.7525 bits (247), Expect = 2.289e-19
Identity = 76/217 (35.02%), Postives = 112/217 (51.61%), Query Frame = 0
Query:  119 ANPPPAIRPSTSPPPSSPPSLDASRQPTTPHD-LQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
            A+ P AI    SP  S+P       Q ++P   + W        S     K  +AI     V  T   +S+PL  G    +L+     PL        K L  +A +Y+ EP LT V++ +MT ++ K + +L+  +F R+L Q V FFDR   GE+T  L+ D+  LKD++  N+ RDRGLRAL E V+GTI LLF L  +L  V  L++ +V+ +
Sbjct:   75 ASDPDAIDRGASPEASAP-------QVSSPAAAISWGGIW----SLLLRHKLRMAISLASLVGCTCCTLSMPLFSGKFFEILIGRGSEPLW-------KLLSKIAVLYTLEPILTIVFVINMTIMWEKVMASLRGQIFRRILIQKVEFFDRYKVGELTGLLTSDLGSLKDVVSENISRDRGLRALSE-VIGTICLLFSLSTQLAPVLGLLMVSVSVL 272          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|1104661644|ref|XP_019081606.1| (PREDICTED: ABC transporter B family member 28 [Vitis vinifera] >gi|297741119|emb|CBI31850.3| unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 98.5969 bits (244), Expect = 4.897e-19
Identity = 77/233 (33.05%), Postives = 115/233 (49.36%), Query Frame = 0
Query:  109 AFLRRRGGTTANPP------PAIRPS-TSPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
            + LR R      PP      PA  P  T P P    S DA  +   P     ++         +LR   LA+  V  +  +   +S+PL  G    VL+     PL        + L  +  +Y+ EP LT +Y+ +M  ++ K +  L+  +F RLL Q V FFDR   GE+T+ L+ D+  LKDI+  N+ RDRG RAL E V+GTI +LF L P+L  +  +++ TV+ +
Sbjct:   46 SLLRSRSKGVVRPPSAYVSGPASDPIITEPDPKVESSNDAHDETVEPPSAISSSLLWSLLMRYKLR---LAVSAVTLIGCSACTLSMPLFSGRFFEVLIGTRPEPLW-------RLLSTVGVLYTLEPVLTIIYVVNMNTIWEKVMSTLRAQIFRRLLIQKVEFFDRYKVGELTALLTSDLGSLKDIVSENISRDRGFRALSE-VIGTICILFTLAPQLAPILGILMLTVSVL 267          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|1052184927|ref|XP_008795363.2| (PREDICTED: ABC transporter B family member 28 [Phoenix dactylifera] >gi|1052184929|ref|XP_017699281.1| PREDICTED: ABC transporter B family member 28 [Phoenix dactylifera])

HSP 1 Score: 97.0561 bits (240), Expect = 1.546e-18
Identity = 73/221 (33.03%), Postives = 110/221 (49.77%), Query Frame = 0
Query:  130 SPPPSSPPSLDASRQPTTPHDLQWAAFAGPSDSPTRLRKRDLAIGGVLSVL----------------ATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
            S P S P ++D    P  P        A P  SP       ++ GG+ S+L                 T   +S+PL  G    +L+     PL        K L  +A +Y+ EP  T +++ +MT ++ K + +L+  +F R+L Q V FFDR   GE+T  L+ D+  LKD++  N+ RDRGLRAL E V+GT+ LLF L  +L  V  L++ +VA +
Sbjct:   73 SAPASDPDAIDRGASPEAP--------APPVSSPAAA----ISWGGIWSLLLRHKLRMAISLASLVGCTSCTLSMPLFSGKFFEILIGRGSEPLW-------KLLSKIAVLYTLEPIFTVIFVINMTIIWEKVMASLRGQIFRRILIQKVEFFDRHKVGELTGLLTSDLGSLKDVVSENISRDRGLRALSE-VIGTVCLLFALSTQLAPVLGLLMVSVAVL 273          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|970017202|ref|XP_015069728.1| (PREDICTED: ABC transporter B family member 28 isoform X2 [Solanum pennellii])

HSP 1 Score: 95.9005 bits (237), Expect = 4.091e-18
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query:  179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
            V+ T  ++S+PL  G    VL+     PLLE        L  +A +Y+ EP  T +Y+ ++T ++ K + +L+  +F R+L Q + FFDR   GE+T+ L+ D+  LK+I+  N  RDRG RAL E VVGT+ LLF L P+L  +  L+I  V+ +
Sbjct:  121 VVCTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRGQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|970017200|ref|XP_015069727.1| (PREDICTED: ABC transporter B family member 28 isoform X1 [Solanum pennellii])

HSP 1 Score: 95.9005 bits (237), Expect = 4.305e-18
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query:  179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
            V+ T  ++S+PL  G    VL+     PLLE        L  +A +Y+ EP  T +Y+ ++T ++ K + +L+  +F R+L Q + FFDR   GE+T+ L+ D+  LK+I+  N  RDRG RAL E VVGT+ LLF L P+L  +  L+I  V+ +
Sbjct:  121 VVCTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRGQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|970017204|ref|XP_015069729.1| (PREDICTED: ABC transporter B family member 28 isoform X3 [Solanum pennellii])

HSP 1 Score: 95.9005 bits (237), Expect = 4.586e-18
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query:  179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
            V+ T  ++S+PL  G    VL+     PLLE        L  +A +Y+ EP  T +Y+ ++T ++ K + +L+  +F R+L Q + FFDR   GE+T+ L+ D+  LK+I+  N  RDRG RAL E VVGT+ LLF L P+L  +  L+I  V+ +
Sbjct:  121 VVCTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRGQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268          
BLAST of EWM21992.1 vs. NCBI_GenBank
Match: gi|1104613189|ref|XP_019068360.1| (PREDICTED: ABC transporter B family member 28 isoform X2 [Solanum lycopersicum])

HSP 1 Score: 95.5153 bits (236), Expect = 4.940e-18
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query:  179 VLATVAAVSVPLGYGGVVNVLLLPAETPLLERKMAFTKALRLLACIYSAEPFLTWVYIRHMTGLFSKGVLNLKNAVFTRLLEQDVAFFDRAGPGEITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTI-LLFKLQPRLGLVFSLVIPTVATI 333
            V+ T  ++S+PL  G    VL+     PLLE        L  +A +Y+ EP  T +Y+ ++T ++ K + +L+  +F R+L Q + FFDR   GE+T+ L+ D+  LK+I+  N  RDRG RAL E VVGT+ LLF L P+L  +  L+I  V+ +
Sbjct:  121 VICTTCSLSLPLLSGRFFEVLIGTRTDPLLE-------LLSKVALLYTLEPIFTIIYVANITSIWEKVMSSLRAQIFRRVLIQKIDFFDRYKVGELTALLTSDLGSLKNIVSENTSRDRGFRALSE-VVGTLSLLFALSPQLAPILGLLILAVSIL 268          
The following BLAST results are available for this feature:
BLAST of EWM21992.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102381|gb|EWM21992.1|0.000e+0100.00abc transporter b family member 28 [Nannochloropsi... [more]
gi|585102380|gb|EWM21991.1|0.000e+099.11abc transporter b family member 28 [Nannochloropsi... [more]
gi|873218424|emb|CEM39524.1|5.835e-2135.58unnamed protein product [Vitrella brassicaformis C... [more]
gi|743828577|ref|XP_010933902.1|2.289e-1935.02PREDICTED: ABC transporter B family member 28 isof... [more]
gi|1104661644|ref|XP_019081606.1|4.897e-1933.05PREDICTED: ABC transporter B family member 28 [Vit... [more]
gi|1052184927|ref|XP_008795363.2|1.546e-1833.03PREDICTED: ABC transporter B family member 28 [Pho... [more]
gi|970017202|ref|XP_015069728.1|4.091e-1838.46PREDICTED: ABC transporter B family member 28 isof... [more]
gi|970017200|ref|XP_015069727.1|4.305e-1838.46PREDICTED: ABC transporter B family member 28 isof... [more]
gi|970017204|ref|XP_015069729.1|4.586e-1838.46PREDICTED: ABC transporter B family member 28 isof... [more]
gi|1104613189|ref|XP_019068360.1|4.940e-1838.46PREDICTED: ABC transporter B family member 28 isof... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8709rna8709Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications