EWM22002.1, cds8670 (CDS) Nannochloropsis gaditana

Overview
NameEWM22002.1
Unique Namecds8670
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:620273..620439 -
Alignment locationKK037249.1:618553..619187 -
Alignment locationKK037249.1:618405..618505 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22002.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100353g5.3229.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:620273..620439 -
KK037249.1supercontigKK037249.1:618553..619187 -
KK037249.1supercontigKK037249.1:618405..618505 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585102398|gb|EWM22002.1| (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MYEMVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTICCDCFIFCRTSNVPHLILLFRRHRNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 300
            MYEMVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTICCDCFIFCRTSNVPHLILLFRRHRNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM
Sbjct:    1 MYEMVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTICCDCFIFCRTSNVPHLILLFRRHRNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 300          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585102400|gb|EWM22004.1| (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 462.996 bits (1190), Expect = 1.387e-163
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:   73 NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 300
            NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM
Sbjct:    4 NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGPTAAPTAAPTVFSGPWRKIIETLRIGPHEFRCKSSTWKNLQVM 231          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585102401|gb|EWM22005.1| (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 331.643 bits (849), Expect = 2.426e-111
Identity = 189/220 (85.91%), Postives = 197/220 (89.55%), Query Frame = 0
Query:   52 CFIFCRTSNVPHLILLFRRHRNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPG---PTAAPTAAPT 267
            C    RTSNVPHLILLFRRHRN TK TIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERT+MNKDKWSMK +LEDPTLAVVSGIGTSGLTVTLLDTADDTLDTA+FAAGDCMVRKNSKGA+CKMMGARVSIRASKPPKGV  K++NSTGGYYSVSGSFR VQLQEDPV  PLTAELTV GVGTLSQTLT CSV+G  T + TCVPG   PT APTAA T
Sbjct:   40 CSGTSRTSNVPHLILLFRRHRNFTKLTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCVPGPIIPTNAPTAAST 259          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|553178588|ref|XP_005852576.1| (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >gi|422295956|gb|EKU23255.1| hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 306.99 bits (785), Expect = 1.386e-102
Identity = 150/157 (95.54%), Postives = 154/157 (98.09%), Query Frame = 0
Query:   99 QMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCV 255
            QMLSLKSIKTFERTQMNKDKWSMK HLEDPTLAVVSGIGT+GLTVTLLD A DTLDTA+FAAGDCMVRK+SKGARCKMMGARVSIRASKPPKGVGKSHNSTGGY+SVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCV
Sbjct:   20 QMLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSIRASKPPKGVGKSHNSTGGYFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCV 176          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585112674|gb|EWM30045.1| (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 176.407 bits (446), Expect = 3.706e-51
Identity = 98/195 (50.26%), Postives = 129/195 (66.15%), Query Frame = 0
Query:   80 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGV---GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCS--VKGT-KTRKVTCVPGP---TAAPTAA 265
            MRR LSLLALG+TL +T GQ  +LK++K  ER++  +D+WSMK +L++P + VV  IG  GLTV LLD + D L +  FAA +C + +N +G RCK MGARVSI+ ++ PKG      + NSTGGYY  SG FRR+Q  +DPV  PLT ++ V G  TL   ++ CS   KG  +  K+TC PGP   T APTAA
Sbjct:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVV-GSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAA 194          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585112664|gb|EWM30036.1| (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 181.03 bits (458), Expect = 8.031e-51
Identity = 94/190 (49.47%), Postives = 128/190 (67.37%), Query Frame = 0
Query:   78 TIMRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGV---GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVG-TLSQTLTGCS--VKGT-KTRKVTCVPGPT 259
            T MRR   LLALG+TL +T GQ + +LK++K  ++++  +D+WSMK +L+DPT+ VV  IG  GLTV L D A  TL++  FAA DC +R+N +G  CK  GARVSI+ S+ PKG      ++NSTGGYYS SG FRR+Q  +DP+ FPLT  L VP +    S  ++ CS  +KG  +T ++TC PGPT
Sbjct:   18 TTMRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPT 207          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|553189589|ref|XP_005855033.1| (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >gi|422294031|gb|EKU21331.1| hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 166.007 bits (419), Expect = 3.475e-47
Identity = 81/157 (51.59%), Postives = 109/157 (69.43%), Query Frame = 0
Query:   80 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGV---GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGV 232
            MRR   LLALG+TL +T GQ + +LK++K  ++++  +D+WSMK +L+DPT+ VV  IG  GLTV L D A  TL++  FAA DC +R+N +G  CK  GARVSI+ S+ PKG      ++NSTGGYYS SG FRR+Q  +DP+ FPLT  L VP +
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGANVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSI 157          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585108538|gb|EWM26485.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 160.614 bits (405), Expect = 2.576e-44
Identity = 98/194 (50.52%), Postives = 121/194 (62.37%), Query Frame = 0
Query:   80 MRRGLSLLALGLT----LALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRAS-----KPPKGV-GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVT---CVPGPTA 260
            MR  LSLL LG+T    L  T GQ L+LKSI+T +R+  NKD W MK ++ DP+L +V  IG +GLTV L D A D L+T  FAA DC V  + + A CK+ GARVSI+ S     K PK V  KS+NSTGGYYSV+G+FR +   E+PV  PLTA L + G   LS TLT C     K+ + T   C PGP A
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSCYDLARKSGRNTISHCEPGPPA 193          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585109630|gb|EWM27399.1| (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 160.614 bits (405), Expect = 3.274e-44
Identity = 103/201 (51.24%), Postives = 122/201 (60.70%), Query Frame = 0
Query:   80 MRRGLSLLALGLTLA----LTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRAS-----KPPKGV-GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVT---CVPGPTAAPTAAPT 267
            MR  LSLLALG+TL      T GQ L+LKSI+  +R+  NKD W MK  + DP+L +VS IG  GLTV L D A D L+T TFAA DC V  + + A CK+ GARVSI+ S     K PK V  KS+NSTGGYYSV+G+FR +   E+PV  PLTA LTV     LS TLT C     K  + T   C PGP   P   PT
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIKTSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTV-DESVLSDTLTLCYNLPRKNGRNTISHCEPGP---PVPTPT 197          
BLAST of EWM22002.1 vs. NCBI_GenBank
Match: gi|585108537|gb|EWM26484.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 160.229 bits (404), Expect = 8.492e-44
Identity = 98/194 (50.52%), Postives = 121/194 (62.37%), Query Frame = 0
Query:   80 MRRGLSLLALGLT----LALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRAS-----KPPKGV-GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVT---CVPGPTA 260
            MR  LSLL LG+T    L  T GQ L+LKSI+T +R+  NKD W MK ++ DP+L +V  IG +GLTV L D A D L+T  FAA DC V  + + A CK+ GARVSI+ S     K PK V  KS+NSTGGYYSV+G+FR +   E+PV  PLTA L + G   LS TLT C     K+ + T   C PGP A
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSCYDLARKSGRNTISHCEPGPPA 193          
The following BLAST results are available for this feature:
BLAST of EWM22002.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102398|gb|EWM22002.1|0.000e+0100.00hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
gi|585102400|gb|EWM22004.1|1.387e-163100.00hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
gi|585102401|gb|EWM22005.1|2.426e-11185.91hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
gi|553178588|ref|XP_005852576.1|1.386e-10295.54hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
gi|585112674|gb|EWM30045.1|3.706e-5150.26hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
gi|585112664|gb|EWM30036.1|8.031e-5149.47hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
gi|553189589|ref|XP_005855033.1|3.475e-4751.59hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
gi|585108538|gb|EWM26485.1|2.576e-4450.52Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585109630|gb|EWM27399.1|3.274e-4451.24hypothetical protein Naga_100212g1, partial [Nanno... [more]
gi|585108537|gb|EWM26484.1|8.492e-4450.52Neuraminidase, partial [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8699rna8699Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications