EWM22001.1, cds8669 (CDS) Nannochloropsis gaditana

Overview
NameEWM22001.1
Unique Namecds8669
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:618190..618334 -
Alignment locationKK037249.1:617141..617388 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22001.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100353g4.3228.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:618190..618334 -
KK037249.1supercontigKK037249.1:617141..617388 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585102397|gb|EWM22001.1| (hypothetical protein Naga_100353g4 [Nannochloropsis gaditana])

HSP 1 Score: 270.781 bits (691), Expect = 5.306e-92
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query:    1 MYELVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTIFLTNFPDSKGAKCKMMGARVSIRASKPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            MYELVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTIFLTNFPDSKGAKCKMMGARVSIRASKPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC
Sbjct:    1 MYELVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTIFLTNFPDSKGAKCKMMGARVSIRASKPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585102401|gb|EWM22005.1| (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.132 bits (370), Expect = 1.960e-41
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 0
Query:   55 DSKGAKCKMMGARVSIRASKPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            +SKGAKCKMMGARVSIRASKPPK VKVKTYNSTGGYYSVSGSFRGVQ QEDPVI PLTAELTV GVGTLSQTLTDC
Sbjct:  156 NSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDC 231          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|553178588|ref|XP_005852576.1| (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >gi|422295956|gb|EKU23255.1| hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.798 bits (325), Expect = 1.720e-35
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 0
Query:   56 SKGAKCKMMGARVSIRASKPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            SKGA+CKMMGARVSIRASKPPK V  K++NSTGGY+SVSGSFR VQ QEDPV FPLTAELTVPGVGTLSQTLT C
Sbjct:   90 SKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGC 163          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585102400|gb|EWM22004.1| (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 130.954 bits (328), Expect = 1.841e-35
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0
Query:   55 DSKGAKCKMMGARVSIRASKPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            +SKGA+CKMMGARVSIRASKPPK V  K++NSTGGYYSVSGSFR VQ QEDPV FPLTAELTVPGVGTLSQTLT C
Sbjct:   99 NSKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGC 173          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585102398|gb|EWM22002.1| (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 130.183 bits (326), Expect = 1.803e-34
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0
Query:   55 DSKGAKCKMMGARVSIRASKPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            +SKGA+CKMMGARVSIRASKPPK V  K++NSTGGYYSVSGSFR VQ QEDPV FPLTAELTVPGVGTLSQTLT C
Sbjct:  168 NSKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGC 242          

HSP 2 Score: 105.916 bits (263), Expect = 3.665e-25
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0
Query:    1 MYELVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTI 48
            MYE+VTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTI
Sbjct:    1 MYEMVTLKVWSLCFNLVCEADDEALLYRVRVQNPVNILSKGKCFWYTI 48          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585108538|gb|EWM26485.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-17
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   59 AKCKMMGARVSIRAS-----KPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+ F E+PV+ PLTA L + G   LS TLT C
Sbjct:   97 ATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSC 172          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585108537|gb|EWM26484.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 85.5001 bits (210), Expect = 1.940e-17
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 0
Query:   57 KGAKCKMMGARVSIRAS-----KPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            + A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+ F E+PV+ PLTA L + G   LS TLT C
Sbjct:   95 RRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSC 172          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585100200|gb|EWM20521.1| (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 82.8037 bits (203), Expect = 5.730e-17
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 0
Query:   57 KGAKCKMMGARVSIRAS-----KPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            + A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+ F E+PV+ PLTA L V G   LS TL  C
Sbjct:   95 RRAACKIRGARVSIKRSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRVNG-SVLSDTLISC 172          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585100656|gb|EWM20775.1| (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 82.4185 bits (202), Expect = 5.829e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   55 DSKGAKCKMMGARVSIRAS-----KPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            + + A CK+ GARVSI++S     K PK V  KTYNSTGGYY V+G+ RG+ F ED V+ PLTA+LTV G   LS TLT C
Sbjct:   93 NGRRATCKIRGARVSIKSSRRPKLKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSPLTAKLTVNG-DVLSDTLTSC 172          
BLAST of EWM22001.1 vs. NCBI_GenBank
Match: gi|585109630|gb|EWM27399.1| (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 83.1889 bits (204), Expect = 7.128e-17
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0
Query:   57 KGAKCKMMGARVSIRAS-----KPPKDVKVKTYNSTGGYYSVSGSFRGVQFQEDPVIFPLTAELTVPGVGTLSQTLTDC 130
            + A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+ F E+PV+ PLTA LTV     LS TLT C
Sbjct:   95 RRAACKIRGARVSIKTSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTV-DESVLSDTLTLC 172          
The following BLAST results are available for this feature:
BLAST of EWM22001.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102397|gb|EWM22001.1|5.306e-92100.00hypothetical protein Naga_100353g4 [Nannochloropsi... [more]
gi|585102401|gb|EWM22005.1|1.960e-4193.42hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
gi|553178588|ref|XP_005852576.1|1.720e-3585.33hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
gi|585102400|gb|EWM22004.1|1.841e-3585.53hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
gi|585102398|gb|EWM22002.1|1.803e-3485.53hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
gi|585108538|gb|EWM26485.1|1.197e-1758.44Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585108537|gb|EWM26484.1|1.940e-1756.96Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585100200|gb|EWM20521.1|5.730e-1756.96hypothetical protein Naga_100335g8, partial [Nanno... [more]
gi|585100656|gb|EWM20775.1|5.829e-1756.79hypothetical protein Naga_100549g2 [Nannochloropsi... [more]
gi|585109630|gb|EWM27399.1|7.128e-1758.23hypothetical protein Naga_100212g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8698rna8698Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications