EWM22005.1, cds8668 (CDS) Nannochloropsis gaditana

Overview
NameEWM22005.1
Unique Namecds8668
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:617015..617119 -
Alignment locationKK037249.1:615344..616018 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22005.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100353g3.3232.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:617015..617119 -
KK037249.1supercontigKK037249.1:615344..616018 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585102401|gb|EWM22005.1| (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MLSDSFEHVCKARPLSETNLNVSTLSSPAPSLNPSLALACSGTSRTSNVPHLILLFRRHRNFTKLTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCVPGPIIPTNAPTAAST 259
            MLSDSFEHVCKARPLSETNLNVSTLSSPAPSLNPSLALACSGTSRTSNVPHLILLFRRHRNFTKLTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCVPGPIIPTNAPTAAST
Sbjct:    1 MLSDSFEHVCKARPLSETNLNVSTLSSPAPSLNPSLALACSGTSRTSNVPHLILLFRRHRNFTKLTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCVPGPIIPTNAPTAAST 259          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585102398|gb|EWM22002.1| (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 324.324 bits (830), Expect = 1.918e-108
Identity = 181/212 (85.38%), Postives = 191/212 (90.09%), Query Frame = 0
Query:   35 SLALACSGTSRTSNVPHLILLFRRHRNFTKLTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCVPG 246
            ++   C    RTSNVPHLILLFRRHRN TK TIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERT+MNKDKWSMK +LEDPTLAVVSGIGTSGLTVTLLDTADDTLDTA+FAAGDCMVRKNSKGA+CKMMGARVSIRASKPPKGV  K++NSTGGYYSVSGSFR VQLQEDPV  PLTAELTV GVGTLSQTLT CSV+G  T + TCVPG
Sbjct:   47 TICCDCFIFCRTSNVPHLILLFRRHRNLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPG 257          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585102400|gb|EWM22004.1| (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 288.5 bits (737), Expect = 2.192e-95
Identity = 164/186 (88.17%), Postives = 172/186 (92.47%), Query Frame = 0
Query:   61 NFTKLTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCVPG 246
            N TK TIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERT+MNKDKWSMK +LEDPTLAVVSGIGTSGLTVTLLDTADDTLDTA+FAAGDCMVRKNSKGA+CKMMGARVSIRASKPPKGV  K++NSTGGYYSVSGSFR VQLQEDPV  PLTAELTV GVGTLSQTLT CSV+G  T + TCVPG
Sbjct:    4 NLTKRTIMRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPG 188          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|553178588|ref|XP_005852576.1| (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >gi|422295956|gb|EKU23255.1| hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 268.855 bits (686), Expect = 3.916e-88
Identity = 154/177 (87.01%), Postives = 164/177 (92.66%), Query Frame = 0
Query:   68 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVRGAGTTRTTCV 244
            MRRGLSLLALGLTLALTTGQMLSLKSIKTFERT+MNKDKWSMKG+LEDPTLAVVSGIGT+GLTVTLLD A DTLDTASFAAGDCMVRK+SKGA+CKMMGARVSIRASKPPKGV  K++NSTGGY+SVSGSFR VQLQEDPV  PLTAELTV GVGTLSQTLT CSV+G  T + TCV
Sbjct:    1 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSIRASKPPKGVG-KSHNSTGGYFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCV 176          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585112674|gb|EWM30045.1| (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 194.126 bits (492), Expect = 1.033e-58
Identity = 104/196 (53.06%), Postives = 137/196 (69.90%), Query Frame = 0
Query:   68 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKT--YNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVR--GAG-TTRTTCVPGPIIPTNAPTAAS 258
            MRR LSLLALG+TL +T GQ  +LK++K  ER++  +D+WSMKGNL++P + VV  IG  GLTV LLD + D L + +FAA +C + +N +G +CK MGARVSI+ ++ PKG KVK+   NSTGGYY  SG FR +Q  +DPV++PLT ++ V G  TL   ++ CS R  GAG  T+ TC PGP   T APTAAS
Sbjct:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVV-GSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAAS 195          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585100200|gb|EWM20521.1| (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 184.496 bits (467), Expect = 1.740e-54
Identity = 103/196 (52.55%), Postives = 128/196 (65.31%), Query Frame = 0
Query:   68 MRRGLSLLALGLTLA----LTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRAS-----KPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDC---SVRGAGTTRTTCVPGPIIPT 251
            MR  LSLLALG+TL      T GQ L+LKSI+  +R+  NKD W MKGN+ DP+L  V  IG +GLTV L D A D L+T +FAA DC V  + + A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+   E+PV+SPLTA L V G   LS TL  C   + + A +T + C PGP +PT
Sbjct:    1 MRSPLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGNINDPSLTFVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRAACKIRGARVSIKRSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRVNG-SVLSDTLISCYDLARKSARSTISQCEPGPPVPT 195          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585108538|gb|EWM26485.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 184.111 bits (466), Expect = 5.292e-54
Identity = 104/196 (53.06%), Postives = 128/196 (65.31%), Query Frame = 0
Query:   68 MRRGLSLLALGLT----LALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRAS-----KPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCS--VRGAG-TTRTTCVPGPIIPT 251
            MR  LSLL LG+T    L  T GQ L+LKSI+T +R+  NKD W MKGN+ DP+L +V  IG +GLTV L D A D L+T +FAA DC V  + + A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+   E+PV+SPLTA L + G   LS TLT C    R +G  T + C PGP  PT
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSCYDLARKSGRNTISHCEPGPPAPT 195          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585112664|gb|EWM30036.1| (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 187.578 bits (475), Expect = 6.446e-54
Identity = 97/190 (51.05%), Postives = 130/190 (68.42%), Query Frame = 0
Query:   65 LTIMRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVK--TYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGV-GTLSQTLTDCS--VRGAG-TTRTTCVPGP 247
            +T MRR   LLALG+TL +T GQ + +LK++K  ++++  +D+WSMKGNL+DPT+ VV  IG  GLTV L D A  TL++ +FAA DC +R+N +G  CK  GARVSI+ S+ PKG  V+   YNSTGGYYS SG FR +Q  +DP++ PLT  L V  +    S  ++ CS  ++GAG TTR TC PGP
Sbjct:   17 ITTMRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGP 206          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585108537|gb|EWM26484.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 183.726 bits (465), Expect = 2.189e-53
Identity = 104/196 (53.06%), Postives = 128/196 (65.31%), Query Frame = 0
Query:   68 MRRGLSLLALGLT----LALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRAS-----KPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCS--VRGAG-TTRTTCVPGPIIPT 251
            MR  LSLL LG+T    L  T GQ L+LKSI+T +R+  NKD W MKGN+ DP+L +V  IG +GLTV L D A D L+T +FAA DC V  + + A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+   E+PV+SPLTA L + G   LS TLT C    R +G  T + C PGP  PT
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRING-SVLSDTLTSCYDLARKSGRNTISHCEPGPPAPT 195          
BLAST of EWM22005.1 vs. NCBI_GenBank
Match: gi|585109630|gb|EWM27399.1| (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 181.03 bits (458), Expect = 9.256e-53
Identity = 103/196 (52.55%), Postives = 127/196 (64.80%), Query Frame = 0
Query:   68 MRRGLSLLALGLTLA----LTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRAS-----KPPKGVKVKTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDC---SVRGAGTTRTTCVPGPIIPT 251
            MR  LSLLALG+TL      T GQ L+LKSI+  +R+  NKD W MKG++ DP+L +VS IG  GLTV L D A D L+T +FAA DC V  + + A CK+ GARVSI+ S     K PK V  K+YNSTGGYYSV+G+FRG+   E+PV+SPLTA LTV     LS TLT C     +    T + C PGP +PT
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIKTSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTVDE-SVLSDTLTLCYNLPRKNGRNTISHCEPGPPVPT 195          
The following BLAST results are available for this feature:
BLAST of EWM22005.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102401|gb|EWM22005.1|0.000e+0100.00hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
gi|585102398|gb|EWM22002.1|1.918e-10885.38hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
gi|585102400|gb|EWM22004.1|2.192e-9588.17hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
gi|553178588|ref|XP_005852576.1|3.916e-8887.01hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
gi|585112674|gb|EWM30045.1|1.033e-5853.06hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
gi|585100200|gb|EWM20521.1|1.740e-5452.55hypothetical protein Naga_100335g8, partial [Nanno... [more]
gi|585108538|gb|EWM26485.1|5.292e-5453.06Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585112664|gb|EWM30036.1|6.446e-5451.05hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
gi|585108537|gb|EWM26484.1|2.189e-5353.06Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585109630|gb|EWM27399.1|9.256e-5352.55hypothetical protein Naga_100212g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8697rna8697Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications