EWM22018.1, cds8658 (CDS) Nannochloropsis gaditana

Overview
NameEWM22018.1
Unique Namecds8658
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:592885..593415 +
Alignment locationKK037249.1:593515..593731 +
Alignment locationKK037249.1:593838..593917 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22018.1
Productselenoprotein o
Orig transcript idgnl|cribi|Naga_100361g6.4771.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:592885..593415 +
KK037249.1supercontigKK037249.1:593515..593731 +
KK037249.1supercontigKK037249.1:593838..593917 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003846UPF0061
Homology
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|585102424|gb|EWM22018.1| (selenoprotein o [Nannochloropsis gaditana])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query:    1 MHLHTAFPFTSRVSCMPGTTGRAPGTLLSSFQTFLLTAALLLARPQPAASRSSRRLPKTAPLQTLALARPFLSVASRIGAHRPSVTSFARWSAAFQYFSAHSVFPTMRSEAVRAASDSARQAPGHSIPAASRPQPKTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR 275
            MHLHTAFPFTSRVSCMPGTTGRAPGTLLSSFQTFLLTAALLLARPQPAASRSSRRLPKTAPLQTLALARPFLSVASRIGAHRPSVTSFARWSAAFQYFSAHSVFPTMRSEAVRAASDSARQAPGHSIPAASRPQPKTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR
Sbjct:    1 MHLHTAFPFTSRVSCMPGTTGRAPGTLLSSFQTFLLTAALLLARPQPAASRSSRRLPKTAPLQTLALARPFLSVASRIGAHRPSVTSFARWSAAFQYFSAHSVFPTMRSEAVRAASDSARQAPGHSIPAASRPQPKTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR 275          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1191037207|ref|XP_020895842.1| (selenoprotein O-like [Exaiptasia pallida] >gi|999977780|gb|KXJ16954.1| Selenoprotein O [Exaiptasia pallida])

HSP 1 Score: 178.718 bits (452), Expect = 4.542e-48
Identity = 87/139 (62.59%), Postives = 106/139 (76.26%), Query Frame = 0
Query:  136 KTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            K  TLE+L FDNLALR+LPLD + ENF+R V  + +S V+P P+KNP+ VA S  AL+ L+ L  +E +R+ D A +  GNK LPGS+T AHCY GHQFG FSGQLGDGAAI LGEV+ ++GER EIQLKGAG TPYSR
Sbjct:   27 KMATLESLHFDNLALRALPLDQEKENFVRQVSGACFSLVDPTPVKNPITVAASHSALS-LIDLSENEFQRK-DFAEFFSGNKLLPGSKTAAHCYCGHQFGHFSGQLGDGAAIYLGEVINKQGERWEIQLKGAGLTPYSR 163          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|918999480|ref|XP_013399695.1| (PREDICTED: selenoprotein O-like [Lingula anatina])

HSP 1 Score: 174.866 bits (442), Expect = 2.126e-46
Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = 0
Query:  139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            TLE L FDNLALR+LP+D + +NF+R V  + +SRVEP P+ NP +V +S  A+  LL L  SEL+RE D A Y  GNK LPG+ET AHCY GHQFG F+GQLGDGA + LGEV+ ++GER EIQ KGAG TP+SR
Sbjct:   63 TLENLQFDNLALRALPIDTEKKNFVRQVRGACFSRVEPTPVTNPEVVCVSAKAMA-LLDLPESELQRE-DFAEYFSGNKLLPGAETAAHCYCGHQFGQFAGQLGDGATMYLGEVINKKGERWEIQFKGAGKTPFSR 196          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|919068361|ref|XP_013415670.1| (PREDICTED: selenoprotein O-like [Lingula anatina])

HSP 1 Score: 174.481 bits (441), Expect = 2.236e-46
Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = 0
Query:  139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            TLE L FDNLALR+LP+D + +NF+R V  + +SRVEP P+ NP +V +S  A+  LL L  SEL+RE D A Y  GNK LPG+ET AHCY GHQFG F+GQLGDGA + LGEV+ ++GER EIQ KGAG TP+SR
Sbjct:   63 TLENLQFDNLALRALPIDTEKKNFVRQVRGACFSRVEPTPVTNPEVVCVSAKAMA-LLDLPESELRRE-DFAEYFSGNKLLPGAETAAHCYCGHQFGQFAGQLGDGATMYLGEVINKKGERWEIQFKGAGKTPFSR 196          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|242046688|ref|XP_002400867.1| (selenoprotein O, putative [Ixodes scapularis] >gi|215498714|gb|EEC08208.1| selenoprotein O, putative [Ixodes scapularis])

HSP 1 Score: 173.326 bits (438), Expect = 2.441e-46
Identity = 84/136 (61.76%), Postives = 101/136 (74.26%), Query Frame = 0
Query:  139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            T ETL FDNLALR LP+D +  N++R V  + +SRV P PLK+P +V +S DA+  LL LD ++ +R  D A Y  GNK LPGSE  AHCY GHQFG FSGQLGDGAA+ LGEV+ ++GER EIQLKGAG TPYSR
Sbjct:    3 TFETLKFDNLALRRLPIDTESRNYVRTVRGACFSRVMPTPLKSPEMVVVSEDAML-LLDLDRAQFERS-DAAEYFSGNKLLPGSEPAAHCYCGHQFGYFSGQLGDGAAMYLGEVINQKGERWEIQLKGAGLTPYSR 136          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1176082598|ref|XP_020611451.1| (LOW QUALITY PROTEIN: selenoprotein O-like [Orbicella faveolata])

HSP 1 Score: 174.096 bits (440), Expect = 4.925e-46
Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query:  136 KTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR 275
            K  TLETL  DN ALRSLP+D + +N++R VP + +SRVEP P++N   VA S  A++ LL L   EL+R+ D A Y  GNK LPG+E  AHCY GHQFG FSGQLGDGAA+ LGEVV  +GER EIQ KGAG TPYSR+
Sbjct:   52 KMATLETLNMDNFALRSLPIDKEVKNYVRQVPGACFSRVEPTPVENATTVAYSTTAMS-LLDLPEQELQRD-DFAEYFSGNKLLPGTEPAAHCYCGHQFGYFSGQLGDGAAMYLGEVVNRKGERWEIQFKGAGLTPYSRQ 189          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1101373150|dbj|GAV08924.1| (hypothetical protein RvY_18543 [Ramazzottius varieornatus])

HSP 1 Score: 172.555 bits (436), Expect = 8.989e-46
Identity = 83/135 (61.48%), Postives = 100/135 (74.07%), Query Frame = 0
Query:  140 LETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            LE+L FDNLALR+LP+DP  EN+ R VPN+++S VEP P+KNP +VA S DAL  LL +   E KR+ D A Y  GN  LPG+   AHCY GHQFG FSGQLGDGA + LGE+V ++GER E+Q KGAG TPYSR
Sbjct:   34 LESLNFDNLALRALPVDPIKENYTRQVPNAIFSLVEPSPVKNPKVVAYSIDALK-LLDIKEEECKRK-DFAQYFSGNVILPGARPAAHCYCGHQFGYFSGQLGDGATMYLGEIVNKKGERWELQFKGAGKTPYSR 166          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|926611881|ref|XP_013794174.1| (PREDICTED: selenoprotein O-like isoform X1 [Limulus polyphemus])

HSP 1 Score: 171.014 bits (432), Expect = 3.329e-45
Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = 0
Query:  139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            TLETL FDNLALR LP+D +  NF+R V  + +S+V P PL  P +VA S  A++ LL L  +EL+R+ D A Y  GNK LPGS+T AHCY GHQFG F+GQLGDGAAI LGE++ E+ ER EIQ+KGAGPTPYSR
Sbjct:   33 TLETLEFDNLALRRLPIDQEERNFVRVVEGACFSKVSPTPLDKPEVVAYSLPAMS-LLGLPETELRRK-DFADYFSGNKILPGSDTAAHCYCGHQFGYFAGQLGDGAAIYLGEIINEKRERWEIQVKGAGPTPYSR 166          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|926611883|ref|XP_013794175.1| (PREDICTED: selenoprotein O-like isoform X2 [Limulus polyphemus])

HSP 1 Score: 171.014 bits (432), Expect = 3.330e-45
Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = 0
Query:  139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            TLETL FDNLALR LP+D +  NF+R V  + +S+V P PL  P +VA S  A++ LL L  +EL+R+ D A Y  GNK LPGS+T AHCY GHQFG F+GQLGDGAAI LGE++ E+ ER EIQ+KGAGPTPYSR
Sbjct:   33 TLETLEFDNLALRRLPIDQEERNFVRVVEGACFSKVSPTPLDKPEVVAYSLPAMS-LLGLPETELRRK-DFADYFSGNKILPGSDTAAHCYCGHQFGYFAGQLGDGAAIYLGEIINEKRERWEIQVKGAGPTPYSR 166          
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1009569139|ref|XP_015916809.1| (selenoprotein O [Parasteatoda tepidariorum])

HSP 1 Score: 170.629 bits (431), Expect = 4.233e-45
Identity = 82/136 (60.29%), Postives = 103/136 (75.74%), Query Frame = 0
Query:  139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274
            TLE+L FDNLAL+ LP+D + +N++R V  + +S+V+P P+KNP LVALS  AL  LL L  +E++R+ DL  Y  GNK LP SE  +HCY GHQFG FSGQLGDGAAI LGE++ ++ ER EIQLKGAG TPYSR
Sbjct:   27 TLESLKFDNLALKKLPIDNEDKNYVRTVRGACFSKVKPTPVKNPKLVALSKAAL-QLLDLSDTEIERK-DLVEYFSGNKLLPESEPASHCYCGHQFGYFSGQLGDGAAIYLGEILNKKNERWEIQLKGAGLTPYSR 160          
The following BLAST results are available for this feature:
BLAST of EWM22018.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102424|gb|EWM22018.1|0.000e+0100.00selenoprotein o [Nannochloropsis gaditana][more]
gi|1191037207|ref|XP_020895842.1|4.542e-4862.59selenoprotein O-like [Exaiptasia pallida] >gi|9999... [more]
gi|918999480|ref|XP_013399695.1|2.126e-4661.03PREDICTED: selenoprotein O-like [Lingula anatina][more]
gi|919068361|ref|XP_013415670.1|2.236e-4661.03PREDICTED: selenoprotein O-like [Lingula anatina][more]
gi|242046688|ref|XP_002400867.1|2.441e-4661.76selenoprotein O, putative [Ixodes scapularis] >gi|... [more]
gi|1176082598|ref|XP_020611451.1|4.925e-4660.71LOW QUALITY PROTEIN: selenoprotein O-like [Orbicel... [more]
gi|1101373150|dbj|GAV08924.1|8.989e-4661.48hypothetical protein RvY_18543 [Ramazzottius varie... [more]
gi|926611881|ref|XP_013794174.1|3.329e-4561.76PREDICTED: selenoprotein O-like isoform X1 [Limulu... [more]
gi|926611883|ref|XP_013794175.1|3.330e-4561.76PREDICTED: selenoprotein O-like isoform X2 [Limulu... [more]
gi|1009569139|ref|XP_015916809.1|4.233e-4560.29selenoprotein O [Parasteatoda tepidariorum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8687rna8687Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications