EWM22018.1, cds8658 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|585102424|gb|EWM22018.1| (selenoprotein o [Nannochloropsis gaditana]) HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0 Query: 1 MHLHTAFPFTSRVSCMPGTTGRAPGTLLSSFQTFLLTAALLLARPQPAASRSSRRLPKTAPLQTLALARPFLSVASRIGAHRPSVTSFARWSAAFQYFSAHSVFPTMRSEAVRAASDSARQAPGHSIPAASRPQPKTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR 275 MHLHTAFPFTSRVSCMPGTTGRAPGTLLSSFQTFLLTAALLLARPQPAASRSSRRLPKTAPLQTLALARPFLSVASRIGAHRPSVTSFARWSAAFQYFSAHSVFPTMRSEAVRAASDSARQAPGHSIPAASRPQPKTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR Sbjct: 1 MHLHTAFPFTSRVSCMPGTTGRAPGTLLSSFQTFLLTAALLLARPQPAASRSSRRLPKTAPLQTLALARPFLSVASRIGAHRPSVTSFARWSAAFQYFSAHSVFPTMRSEAVRAASDSARQAPGHSIPAASRPQPKTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR 275
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1191037207|ref|XP_020895842.1| (selenoprotein O-like [Exaiptasia pallida] >gi|999977780|gb|KXJ16954.1| Selenoprotein O [Exaiptasia pallida]) HSP 1 Score: 178.718 bits (452), Expect = 4.542e-48 Identity = 87/139 (62.59%), Postives = 106/139 (76.26%), Query Frame = 0 Query: 136 KTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 K TLE+L FDNLALR+LPLD + ENF+R V + +S V+P P+KNP+ VA S AL+ L+ L +E +R+ D A + GNK LPGS+T AHCY GHQFG FSGQLGDGAAI LGEV+ ++GER EIQLKGAG TPYSR Sbjct: 27 KMATLESLHFDNLALRALPLDQEKENFVRQVSGACFSLVDPTPVKNPITVAASHSALS-LIDLSENEFQRK-DFAEFFSGNKLLPGSKTAAHCYCGHQFGHFSGQLGDGAAIYLGEVINKQGERWEIQLKGAGLTPYSR 163
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|918999480|ref|XP_013399695.1| (PREDICTED: selenoprotein O-like [Lingula anatina]) HSP 1 Score: 174.866 bits (442), Expect = 2.126e-46 Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = 0 Query: 139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 TLE L FDNLALR+LP+D + +NF+R V + +SRVEP P+ NP +V +S A+ LL L SEL+RE D A Y GNK LPG+ET AHCY GHQFG F+GQLGDGA + LGEV+ ++GER EIQ KGAG TP+SR Sbjct: 63 TLENLQFDNLALRALPIDTEKKNFVRQVRGACFSRVEPTPVTNPEVVCVSAKAMA-LLDLPESELQRE-DFAEYFSGNKLLPGAETAAHCYCGHQFGQFAGQLGDGATMYLGEVINKKGERWEIQFKGAGKTPFSR 196
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|919068361|ref|XP_013415670.1| (PREDICTED: selenoprotein O-like [Lingula anatina]) HSP 1 Score: 174.481 bits (441), Expect = 2.236e-46 Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = 0 Query: 139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 TLE L FDNLALR+LP+D + +NF+R V + +SRVEP P+ NP +V +S A+ LL L SEL+RE D A Y GNK LPG+ET AHCY GHQFG F+GQLGDGA + LGEV+ ++GER EIQ KGAG TP+SR Sbjct: 63 TLENLQFDNLALRALPIDTEKKNFVRQVRGACFSRVEPTPVTNPEVVCVSAKAMA-LLDLPESELRRE-DFAEYFSGNKLLPGAETAAHCYCGHQFGQFAGQLGDGATMYLGEVINKKGERWEIQFKGAGKTPFSR 196
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|242046688|ref|XP_002400867.1| (selenoprotein O, putative [Ixodes scapularis] >gi|215498714|gb|EEC08208.1| selenoprotein O, putative [Ixodes scapularis]) HSP 1 Score: 173.326 bits (438), Expect = 2.441e-46 Identity = 84/136 (61.76%), Postives = 101/136 (74.26%), Query Frame = 0 Query: 139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 T ETL FDNLALR LP+D + N++R V + +SRV P PLK+P +V +S DA+ LL LD ++ +R D A Y GNK LPGSE AHCY GHQFG FSGQLGDGAA+ LGEV+ ++GER EIQLKGAG TPYSR Sbjct: 3 TFETLKFDNLALRRLPIDTESRNYVRTVRGACFSRVMPTPLKSPEMVVVSEDAML-LLDLDRAQFERS-DAAEYFSGNKLLPGSEPAAHCYCGHQFGYFSGQLGDGAAMYLGEVINQKGERWEIQLKGAGLTPYSR 136
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1176082598|ref|XP_020611451.1| (LOW QUALITY PROTEIN: selenoprotein O-like [Orbicella faveolata]) HSP 1 Score: 174.096 bits (440), Expect = 4.925e-46 Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 0 Query: 136 KTYTLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSRR 275 K TLETL DN ALRSLP+D + +N++R VP + +SRVEP P++N VA S A++ LL L EL+R+ D A Y GNK LPG+E AHCY GHQFG FSGQLGDGAA+ LGEVV +GER EIQ KGAG TPYSR+ Sbjct: 52 KMATLETLNMDNFALRSLPIDKEVKNYVRQVPGACFSRVEPTPVENATTVAYSTTAMS-LLDLPEQELQRD-DFAEYFSGNKLLPGTEPAAHCYCGHQFGYFSGQLGDGAAMYLGEVVNRKGERWEIQFKGAGLTPYSRQ 189
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1101373150|dbj|GAV08924.1| (hypothetical protein RvY_18543 [Ramazzottius varieornatus]) HSP 1 Score: 172.555 bits (436), Expect = 8.989e-46 Identity = 83/135 (61.48%), Postives = 100/135 (74.07%), Query Frame = 0 Query: 140 LETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 LE+L FDNLALR+LP+DP EN+ R VPN+++S VEP P+KNP +VA S DAL LL + E KR+ D A Y GN LPG+ AHCY GHQFG FSGQLGDGA + LGE+V ++GER E+Q KGAG TPYSR Sbjct: 34 LESLNFDNLALRALPVDPIKENYTRQVPNAIFSLVEPSPVKNPKVVAYSIDALK-LLDIKEEECKRK-DFAQYFSGNVILPGARPAAHCYCGHQFGYFSGQLGDGATMYLGEIVNKKGERWELQFKGAGKTPYSR 166
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|926611881|ref|XP_013794174.1| (PREDICTED: selenoprotein O-like isoform X1 [Limulus polyphemus]) HSP 1 Score: 171.014 bits (432), Expect = 3.329e-45 Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = 0 Query: 139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 TLETL FDNLALR LP+D + NF+R V + +S+V P PL P +VA S A++ LL L +EL+R+ D A Y GNK LPGS+T AHCY GHQFG F+GQLGDGAAI LGE++ E+ ER EIQ+KGAGPTPYSR Sbjct: 33 TLETLEFDNLALRRLPIDQEERNFVRVVEGACFSKVSPTPLDKPEVVAYSLPAMS-LLGLPETELRRK-DFADYFSGNKILPGSDTAAHCYCGHQFGYFAGQLGDGAAIYLGEIINEKRERWEIQVKGAGPTPYSR 166
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|926611883|ref|XP_013794175.1| (PREDICTED: selenoprotein O-like isoform X2 [Limulus polyphemus]) HSP 1 Score: 171.014 bits (432), Expect = 3.330e-45 Identity = 84/136 (61.76%), Postives = 102/136 (75.00%), Query Frame = 0 Query: 139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 TLETL FDNLALR LP+D + NF+R V + +S+V P PL P +VA S A++ LL L +EL+R+ D A Y GNK LPGS+T AHCY GHQFG F+GQLGDGAAI LGE++ E+ ER EIQ+KGAGPTPYSR Sbjct: 33 TLETLEFDNLALRRLPIDQEERNFVRVVEGACFSKVSPTPLDKPEVVAYSLPAMS-LLGLPETELRRK-DFADYFSGNKILPGSDTAAHCYCGHQFGYFAGQLGDGAAIYLGEIINEKRERWEIQVKGAGPTPYSR 166
BLAST of EWM22018.1 vs. NCBI_GenBank
Match: gi|1009569139|ref|XP_015916809.1| (selenoprotein O [Parasteatoda tepidariorum]) HSP 1 Score: 170.629 bits (431), Expect = 4.233e-45 Identity = 82/136 (60.29%), Postives = 103/136 (75.74%), Query Frame = 0 Query: 139 TLETLPFDNLALRSLPLDPQPENFIRPVPNSVYSRVEPEPLKNPVLVALSPDALTDLLSLDPSELKREEDLAAYLGGNKRLPGSETYAHCYAGHQFGAFSGQLGDGAAISLGEVVGERGERCEIQLKGAGPTPYSR 274 TLE+L FDNLAL+ LP+D + +N++R V + +S+V+P P+KNP LVALS AL LL L +E++R+ DL Y GNK LP SE +HCY GHQFG FSGQLGDGAAI LGE++ ++ ER EIQLKGAG TPYSR Sbjct: 27 TLESLKFDNLALKKLPIDNEDKNYVRTVRGACFSKVKPTPVKNPKLVALSKAAL-QLLDLSDTEIERK-DLVEYFSGNKLLPESEPASHCYCGHQFGYFSGQLGDGAAIYLGEILNKKNERWEIQLKGAGLTPYSR 160 The following BLAST results are available for this feature:
BLAST of EWM22018.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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