EWM22034.1, cds8613 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22034.1
Unique Name	cds8613
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037249.1:487989..488234 -
Alignment location	KK037249.1:487492..487908 -
Alignment location	KK037249.1:486828..487343 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22034.1
Product	Protein of unknown function DUF81
Orig transcript id	gnl\|cribi\|Naga_100052g3.1159.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:487989..488234 -
KK037249.1	supercontig	KK037249.1:487492..487908 -
KK037249.1	supercontig	KK037249.1:486828..487343 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR002781	TM_pro_TauE-like

Homology

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BLAST of EWM22034.1 vs. NCBI_GenBank
Match: gi|585102449|gb|EWM22034.1| (Protein of unknown function DUF81 [Nannochloropsis gaditana])

HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0

Query:    1 MHLIRIILSLANSQSLAFQPPCQADLCVTHFHLRFHSIRNSHQNFPGVCSSTISEAVYNLTVGGLAAMAVQSALIWREVNWQLVRLLLWPILFGTGLGLVALYHVHSLWLKRVLGLVFLSVGAYQIPAEVLRAKGLSGGHDGKQGQVLVEGEERAGLRRLGRVLGLASGFLAGLFGTGGAPLMILVAATGVEKDEWRASNAVIWLVDNVFRLLYLQAVQRQISLPDDASRLLLLMLAGGLGVGAGSALSSFVDVALFRRLLILLMLLGANVMLFAGRPLRTAVVGVCAVSLFFLLYLLALWRQPSGPGPWASLLAAAGLAAKSSSVEDWVPQRWVGKSGYSRVATQAEEEREEGRGGDGNGKPRQGPALENRDDKDARMEHRRKPEIEMMAV 392
            MHLIRIILSLANSQSLAFQPPCQADLCVTHFHLRFHSIRNSHQNFPGVCSSTISEAVYNLTVGGLAAMAVQSALIWREVNWQLVRLLLWPILFGTGLGLVALYHVHSLWLKRVLGLVFLSVGAYQIPAEVLRAKGLSGGHDGKQGQVLVEGEERAGLRRLGRVLGLASGFLAGLFGTGGAPLMILVAATGVEKDEWRASNAVIWLVDNVFRLLYLQAVQRQISLPDDASRLLLLMLAGGLGVGAGSALSSFVDVALFRRLLILLMLLGANVMLFAGRPLRTAVVGVCAVSLFFLLYLLALWRQPSGPGPWASLLAAAGLAAKSSSVEDWVPQRWVGKSGYSRVATQAEEEREEGRGGDGNGKPRQGPALENRDDKDARMEHRRKPEIEMMAV
Sbjct:    1 MHLIRIILSLANSQSLAFQPPCQADLCVTHFHLRFHSIRNSHQNFPGVCSSTISEAVYNLTVGGLAAMAVQSALIWREVNWQLVRLLLWPILFGTGLGLVALYHVHSLWLKRVLGLVFLSVGAYQIPAEVLRAKGLSGGHDGKQGQVLVEGEERAGLRRLGRVLGLASGFLAGLFGTGGAPLMILVAATGVEKDEWRASNAVIWLVDNVFRLLYLQAVQRQISLPDDASRLLLLMLAGGLGVGAGSALSSFVDVALFRRLLILLMLLGANVMLFAGRPLRTAVVGVCAVSLFFLLYLLALWRQPSGPGPWASLLAAAGLAAKSSSVEDWVPQRWVGKSGYSRVATQAEEEREEGRGGDGNGKPRQGPALENRDDKDARMEHRRKPEIEMMAV 392

The following BLAST results are available for this feature:

BLAST of EWM22034.1 vs. NCBI_GenBank

BLAST of EWM22034.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102449\|gb\|EWM22034.1\|	0.000e+0	100.00	Protein of unknown function DUF81 [Nannochloropsis...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8640	rna8640	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications