EWM22069.1, cds8609 (CDS) Nannochloropsis gaditana

Overview
NameEWM22069.1
Unique Namecds8609
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:479931..480827 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22069.1
Productfgd6 protein
Orig transcript idgnl|cribi|Naga_100244g10.1334.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:479931..480827 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0007049cell cycle
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR002423Cpn60/TCP-1
IPR013083Znf_RING/FYVE/PHD
IPR000306Znf_FYVE
Homology
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|585102485|gb|EWM22069.1| (fgd6 protein [Nannochloropsis gaditana])

HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0
Query:    1 MERSPNGRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRKMKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATMEGLKKNEMTRETERSPGRVCGSNSSTHVERKVEGDKQEERQQALENDDEPFPQQAGKKKKQRSKDKTFSTAGIGLLAVGCTALAIGSALAMSPKLLSGIMGRFKR 298
            MERSPNGRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRKMKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATMEGLKKNEMTRETERSPGRVCGSNSSTHVERKVEGDKQEERQQALENDDEPFPQQAGKKKKQRSKDKTFSTAGIGLLAVGCTALAIGSALAMSPKLLSGIMGRFKR
Sbjct:    1 MERSPNGRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRKMKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATMEGLKKNEMTRETERSPGRVCGSNSSTHVERKVEGDKQEERQQALENDDEPFPQQAGKKKKQRSKDKTFSTAGIGLLAVGCTALAIGSALAMSPKLLSGIMGRFKR 298          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|553186092|ref|XP_005854358.1| (fgd6 protein [Nannochloropsis gaditana CCMP526] >gi|422294698|gb|EKU21998.1| fgd6 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 297/298 (99.66%), Postives = 297/298 (99.66%), Query Frame = 0
Query:    1 MERSPNGRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRKMKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATMEGLKKNEMTRETERSPGRVCGSNSSTHVERKVEGDKQEERQQALENDDEPFPQQAGKKKKQRSKDKTFSTAGIGLLAVGCTALAIGSALAMSPKLLSGIMGRFKR 298
            MERSPNGRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRKMKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATMEGLKKNEMTRETERSPGRVCGSNSSTHVERKVEGDKQEERQQALENDDEPFPQQAGKKKKQRSKDKTFSTA IGLLAVGCTALAIGSALAMSPKLLSGIMGRFKR
Sbjct:    1 MERSPNGRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRKMKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATMEGLKKNEMTRETERSPGRVCGSNSSTHVERKVEGDKQEERQQALENDDEPFPQQAGKKKKQRSKDKTFSTASIGLLAVGCTALAIGSALAMSPKLLSGIMGRFKR 298          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|1173957723|gb|OQS04200.1| (hypothetical protein THRCLA_20943 [Thraustotheca clavata])

HSP 1 Score: 80.4925 bits (197), Expect = 1.162e-13
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   90 SELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCV 160
            +E +P   Y+V WVHD   L C VC   FS   RR HHCR+CG +VCS CS  R  V GL  L + C DC+
Sbjct:  110 AERNPLETYNVTWVHDVDVLDCSVCHTRFSFFFRR-HHCRSCGSIVCSNCSQTRKPVYGLINLHRVCDDCI 179          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|1173930913|gb|OQR83506.1| (hypothetical protein ACHHYP_14610 [Achlya hypogyna])

HSP 1 Score: 76.6406 bits (187), Expect = 5.328e-13
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0
Query:   90 SELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCV 160
            +E +P   YDV WVHD    +CMVC  +F+ L  R+HHCR+CG VVCS C+ +R  V GL    + C +C+
Sbjct:  107 AERNPLETYDVTWVHDYDVQACMVCQLQFN-LFFRRHHCRSCGNVVCSRCAKSRRAVYGLLNQHRVCDECL 176          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|1032647487|gb|OAQ28787.1| (hypothetical protein K457DRAFT_126461 [Mortierella elongata AG-77])

HSP 1 Score: 77.411 bits (189), Expect = 3.848e-12
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 0
Query:  102 WVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRG--LQKACTDCV 160
            WV D+ A  CM+C  EF  L RRKHHCRACG+VVC  CSS  +L+ G     + +AC DC+
Sbjct:  984 WVPDQSATRCMICSEEFGTLFRRKHHCRACGKVVCHSCSSRTILIKGAHSEKVGRACDDCI 1044          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|669149520|ref|XP_008610322.1| (hypothetical protein SDRG_06324 [Saprolegnia diclina VS20] >gi|530737974|gb|EQC36216.1| hypothetical protein SDRG_06324 [Saprolegnia diclina VS20])

HSP 1 Score: 75.8702 bits (185), Expect = 5.011e-12
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 0
Query:   90 SELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEEND 190
            +E +P  +YDV WVHD    +CMVC   F     R+HHCR+CG VVCS C+ +R  V GL    + C +CV     +    +   D   G++L ++   N+
Sbjct:  123 AERNPLESYDVTWVHDYDVAACMVCQTSFG-FFFRRHHCRSCGNVVCSHCAKSRRPVYGLLHAHRVCDECV-----VNGVWTDPRDVRAGLQLKQDAARNE 217          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|673031632|ref|XP_008869777.1| (hypothetical protein, variant 4 [Aphanomyces invadans] >gi|574474928|gb|ETW01929.1| hypothetical protein, variant 4 [Aphanomyces invadans])

HSP 1 Score: 73.9442 bits (180), Expect = 1.582e-11
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 0
Query:   98 YDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRA--CESISEDSEGGVRL 182
            Y V WV D+  + CM+C   F  +  R+HHCR+CG +VCS CS AR  V GL GL + C  C+     ++     SI +D+ G  R+
Sbjct:  133 YTVWWVDDDALVGCMICHVPFG-MYFRRHHCRSCGDIVCSDCSKARKDVYGLDGLHRVCDACMVDGTWVQPQRQRSIVDDAAGDDRV 218          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|669149524|ref|XP_008610324.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530737976|gb|EQC36218.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 72.4034 bits (176), Expect = 3.077e-11
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 0
Query:   91 ELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKL-----RACESISEDSEG 178
            +L P  AY V+WV DE   +C +C   F   +RR HHCR CG +VC+ C+ AR  V GL GL++ C  C+     +     RA E + +D +G
Sbjct:   10 DLKPGEAYAVDWVRDEDVHACALCATAFGFFVRR-HHCRGCGHIVCAECAVARREVYGLLGLERVCDACLSNGVWVDPVARRALEKLEQDEDG 101          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|1183485358|gb|ORZ09102.1| (hypothetical protein BCR41DRAFT_398970 [Lobosporangium transversale])

HSP 1 Score: 73.9442 bits (180), Expect = 4.854e-11
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 0
Query:  102 WVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRG--LQKACTDCV 160
            WV D  A  CM+C  EF  L RRKHHCRACG+VVC  CSS  +L+       + +AC DC+
Sbjct: 1026 WVPDHSATRCMICSEEFGTLFRRKHHCRACGKVVCHSCSSRNILIRSGNSEKVGRACDDCI 1086          
BLAST of EWM22069.1 vs. NCBI_GenBank
Match: gi|673031634|ref|XP_008869778.1| (hypothetical protein, variant 5 [Aphanomyces invadans] >gi|673031636|ref|XP_008869779.1| hypothetical protein, variant 6 [Aphanomyces invadans] >gi|574474929|gb|ETW01930.1| hypothetical protein, variant 5 [Aphanomyces invadans] >gi|574474930|gb|ETW01931.1| hypothetical protein, variant 6 [Aphanomyces invadans])

HSP 1 Score: 72.0182 bits (175), Expect = 5.403e-11
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0
Query:   98 YDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCV 160
            Y V WV D+  + CM+C   F    RR HHCR+CG +VCS CS AR  V GL GL + C  C+
Sbjct:  133 YTVWWVDDDALVGCMICHVPFGMYFRR-HHCRSCGDIVCSDCSKARKDVYGLDGLHRVCDACM 194          
The following BLAST results are available for this feature:
BLAST of EWM22069.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102485|gb|EWM22069.1|0.000e+0100.00fgd6 protein [Nannochloropsis gaditana][more]
gi|553186092|ref|XP_005854358.1|0.000e+099.66fgd6 protein [Nannochloropsis gaditana CCMP526] >g... [more]
gi|1173957723|gb|OQS04200.1|1.162e-1349.30hypothetical protein THRCLA_20943 [Thraustotheca c... [more]
gi|1173930913|gb|OQR83506.1|5.328e-1346.48hypothetical protein ACHHYP_14610 [Achlya hypogyna... [more]
gi|1032647487|gb|OAQ28787.1|3.848e-1252.46hypothetical protein K457DRAFT_126461 [Mortierella... [more]
gi|669149520|ref|XP_008610322.1|5.011e-1236.63hypothetical protein SDRG_06324 [Saprolegnia dicli... [more]
gi|673031632|ref|XP_008869777.1|1.582e-1140.23hypothetical protein, variant 4 [Aphanomyces invad... [more]
gi|669149524|ref|XP_008610324.1|3.077e-1139.78hypothetical protein, variant [Saprolegnia diclina... [more]
gi|1183485358|gb|ORZ09102.1|4.854e-1150.82hypothetical protein BCR41DRAFT_398970 [Lobosporan... [more]
gi|673031634|ref|XP_008869778.1|5.403e-1149.21hypothetical protein, variant 5 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8636rna8636Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications