EWM22090.1, cds8589 (CDS) Nannochloropsis gaditana

Overview
NameEWM22090.1
Unique Namecds8589
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:432390..433574 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22090.1
ProductBSD domain-containing protein
Orig transcript idgnl|cribi|Naga_100039g16.4428.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:432390..433574 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD
Homology
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|585102507|gb|EWM22090.1| (BSD domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query:    1 MWRTFQQDISEFVSVVTGDAKEALSSVLQTPSEHDNTHVMRKSCDKSNTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLNLTGGDDEEDLSWGDEDEGVSGKKDNSADRVQAPGTEGNNTEPPGASNSSSPMEEPDLDHAASSSHAQNVVADSAVNENGLTKSNRVTHCDEEREERSDTPSTSTPALEAPPLQAKVEKYETLINGMRKEISSLKSKCTTLERQCADAIQKEGRVVAQLSGTLTALKQSQDECLQLRKQCQDLKEQQPKGLVQQENQESVQQMRVPEVKNTIISRDEGSKQDERDYEELESWS 394
            MWRTFQQDISEFVSVVTGDAKEALSSVLQTPSEHDNTHVMRKSCDKSNTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLNLTGGDDEEDLSWGDEDEGVSGKKDNSADRVQAPGTEGNNTEPPGASNSSSPMEEPDLDHAASSSHAQNVVADSAVNENGLTKSNRVTHCDEEREERSDTPSTSTPALEAPPLQAKVEKYETLINGMRKEISSLKSKCTTLERQCADAIQKEGRVVAQLSGTLTALKQSQDECLQLRKQCQDLKEQQPKGLVQQENQESVQQMRVPEVKNTIISRDEGSKQDERDYEELESWS
Sbjct:    1 MWRTFQQDISEFVSVVTGDAKEALSSVLQTPSEHDNTHVMRKSCDKSNTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLNLTGGDDEEDLSWGDEDEGVSGKKDNSADRVQAPGTEGNNTEPPGASNSSSPMEEPDLDHAASSSHAQNVVADSAVNENGLTKSNRVTHCDEEREERSDTPSTSTPALEAPPLQAKVEKYETLINGMRKEISSLKSKCTTLERQCADAIQKEGRVVAQLSGTLTALKQSQDECLQLRKQCQDLKEQQPKGLVQQENQESVQQMRVPEVKNTIISRDEGSKQDERDYEELESWS 394          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|565385053|ref|XP_006358434.1| (PREDICTED: BSD domain-containing protein 1 [Solanum tuberosum])

HSP 1 Score: 65.855 bits (159), Expect = 4.406e-8
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 0
Query:   48 NTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPL--NLTGGDDEEDLSWGDEDEGVSGKKDNSADRVQAPGTEGNNTE 203
            N+  +S   +Q   L+++Q DP T+   +  ED E ++ + ++ +L  K  E+  L+E+ E +  +YK ++             N++D+ETFW RYF+KV   L+ Q      L       DDEE+LSW  +DE  + ++  +  +V   G EG+  E
Sbjct:  160 NSGRYSRFESQ---LMNIQSDPNTF--CMDPEDLEEYKKWKSEFELKEKSKEVEILIEENESLEGIYKRVVP------------NEVDNETFWCRYFYKVYK-LKQQESVRANLVKRAIAIDDEEELSWDVDDEDDNEQESIAKSKVDEKGKEGSVVE 299          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|1063466035|ref|XP_017969770.1| (PREDICTED: BSD domain-containing protein 1 [Theobroma cacao])

HSP 1 Score: 65.4698 bits (158), Expect = 6.323e-8
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   48 NTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPL--NLTGGDDEEDLSW 174
            N+  +S   A    + ++Q D  T++EA   ED E ++ + +   L+ K++EI RL+E+   + R+YK ++          G  N +DHETFW RYF+KV  L + + D    L       ++EE+LSW
Sbjct:  146 NSKRYSRFDAH---VRAIQGDTNTFSEA--PEDLEDYKKWKSGFGLEDKKEEIERLMEENGELRRIYKRVV----------GVSNGVDHETFWCRYFYKVFKLKQAE-DMRVKLVKRAISREEEEELSW 258          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|727429897|ref|XP_010481925.1| (PREDICTED: BSD domain-containing protein 1-like [Camelina sativa])

HSP 1 Score: 65.0846 bits (157), Expect = 6.546e-8
Identity = 62/207 (29.95%), Postives = 97/207 (46.86%), Query Frame = 0
Query:   45 DKSNTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPL--NLTGGDDEEDLSWGDEDEGVSGKKDNSADR-VQAPGTEGNNTEPPGASNSSSPMEEPDLDHAASSSHAQNVVADSAVNENGLTKSNRV 248
            D  ++  +S   AQ   +  +Q DP TY E    ED + ++ + +   LD K +E+ +L ED   +  +YK  +             N +DHETFW RYF+KV  L + + D    L       DDEE+LSW  +DE  S +KD  A + V     EGN+        S +  +E     + +    Q+ V  SA + +G+T+ + V
Sbjct:  137 DSFSSKPYSRFDAQ---IRVVQGDPNTYCEE--PEDSDDYKKWESGFSLDEKAEEMEKLFEDNGDMKGVYKRAVP------------NTVDHETFWFRYFYKVHKLKQAE-DLRANLVKRAISLDDEEELSWDIDDEDESSEKDVEATKEVSRLKLEGNDGIMGSGDVSETVKDEVTNADSVAKVSTQDEVTTSADSVDGVTEVSNV 325          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|1204896294|ref|XP_021280077.1| (BSD domain-containing protein 1 [Herrania umbratica])

HSP 1 Score: 63.5438 bits (153), Expect = 2.286e-7
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   48 NTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPL--NLTGGDDEEDLSW 174
            N+  +S   AQ   + ++Q +  T++EA   ED E ++ + +   L  K++EI RL+E+   +  +YK ++          G  N++DHETFW RYFFKV  L + + D    L       ++EE+LSW
Sbjct:  146 NSKRYSRFDAQ---VRAIQGESNTFSEA--PEDLEDYKKWKSGFVLGDKKEEIERLMEENGELRSIYKRVV----------GVSNEVDHETFWCRYFFKVFKLKQAE-DMRVKLVKRAISREEEEELSW 258          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|1028963294|ref|XP_016725150.1| (PREDICTED: BSD domain-containing protein 1-like [Gossypium hirsutum])

HSP 1 Score: 63.1586 bits (152), Expect = 3.408e-7
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 0
Query:   48 NTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLN-LTGGDDEEDLSW 174
            N+  +S   AQ   + ++Q D  TY E    ED E ++ + +   L+ K++EI RL+E+   +  +YK ++          G  N +DHETFW RYF+KV  L + +      +N     ++EE+LSW
Sbjct:  140 NSKRYSRFDAQ---VRAIQGDINTYIEE--PEDLEDYKKWKSGFGLEEKKEEIERLMEENGEMGSIYKRIV----------GVSNGVDHETFWCRYFYKVFKLKQAEDMRVKLVNRAISREEEEELSW 252          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|1050588360|ref|XP_017615494.1| (PREDICTED: BSD domain-containing protein 1-like [Gossypium arboreum])

HSP 1 Score: 63.1586 bits (152), Expect = 3.628e-7
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 0
Query:   48 NTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLN-LTGGDDEEDLSW 174
            N+  +S   AQ   + ++Q D  TY E    ED E ++ + +   L+ K++EI RL+E+   +  +YK ++          G  N +DHETFW RYF+KV  L + +      +N     ++EE+LSW
Sbjct:  140 NSKRYSRFDAQ---VRAIQGDINTYIEE--PEDLEDYKKWKSGFGLEEKKEEIERLMEENGEMGSIYKRVV----------GVSNGVDHETFWCRYFYKVFKLKQAEDMRVKLVNRAISREEEEELSW 252          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|1029108493|ref|XP_016717448.1| (PREDICTED: BSD domain-containing protein 1-like [Gossypium hirsutum])

HSP 1 Score: 62.7734 bits (151), Expect = 4.374e-7
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 0
Query:   48 NTNLHSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLN-LTGGDDEEDLSW 174
            N+  +S   AQ   + ++Q D  TY E    ED E ++ + +   L+ K++EI RL+E+   +  +YK ++          G  N +DHETFW RYF+KV  L + +      +N     ++EE+LSW
Sbjct:  140 NSKRYSRFDAQ---VRAIQGDINTYIEE--PEDLEDYKKWKSGFGLEEKKEEIERLMEENGEMGSIYKRVV----------GVSNGVDHETFWCRYFYKVFKLKQAEDMRVKLVNRAISREEEEELSW 252          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|1124037492|ref|XP_019577038.1| (PREDICTED: BSD domain-containing protein 1-like [Rhinolophus sinicus])

HSP 1 Score: 62.7734 bits (151), Expect = 4.428e-7
Identity = 69/244 (28.28%), Postives = 108/244 (44.26%), Query Frame = 0
Query:   45 DKSNTNLHSTLSAQDEDLLSLQRDPKTYTEAIAE-EDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPL--NLTGGDDEEDLSWG-DEDEGVSGKKDNSADRVQAPGTEGNNTEPPGASNSSSPMEEPDLDHAASSSHAQNVVADSAVNENGLTK-SNRVTHCDEEREERSDTPSTSTPALE-----APPLQAKV 278
            D  ++  +S   AQ   + ++Q DP TY+E   + +D +RW+   ++  L  K +E+  LLE    +  +YK L+             N +DH+TFW RYF+K+  L + + D    L       DDEE+LSW  D+DE  S K   +   V     EGN+    G           D+      S  +  V D   + + +T+ SN     D + EE+ +T S   P  +     APP   +V
Sbjct:  137 DSFSSKPYSRFDAQ---VRAVQGDPNTYSEDPDDSDDYKRWE---SEFSLGEKAEEMDLLLEANGDMKGVYKRLVP------------NMVDHQTFWFRYFYKLHKLKQAE-DLRANLVKRAISLDDEEELSWDIDDDEETSEKGTEATKEVSRLRLEGNDDTGSG-----------DVSETVKDSVTEKSVKDEVTSADSVTEVSNVGLKTDTDSEEKKETGSEKVPESKIVVDAAPPASDEV 350          
BLAST of EWM22090.1 vs. NCBI_GenBank
Match: gi|1072909223|ref|XP_018441205.1| (PREDICTED: BSD domain-containing protein 1 [Raphanus sativus])

HSP 1 Score: 62.003 bits (149), Expect = 6.953e-7
Identity = 63/218 (28.90%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   52 HSTLSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLNLTGGDDEEDLSW--GDEDEGVSGKKDNSADRVQAPGTEGNNTEPPGASNSSSPMEEPDLDHAASSSHAQNVVADSAVNENGLTKSNRVTHCDEEREERSDTPSTSTP 267
            +S   AQ   + ++Q D  TY+E   +ED + ++ + A+  +  + +E+  LLE    +  +YK ++ S             +DHETFW RYF+KV  L + +      +     DDEE+LSW   DE+E  S K D  A  V     EGN+         S  + E   D     S   +V +  +V+E     SN   + D   EE+ +T S   P
Sbjct:  138 YSRFDAQ---VRAVQGDVSTYSEE-PDEDSDEYRKWEAEFPIGDRSEEMEMLLEGNGEMRGVYKRVVPS------------VVDHETFWFRYFYKVYKLKQAEDLRANLVKRAALDDEEELSWDIDDEEETASEKVDEVAKDVSRLKLEGND---------SGDVSETVKDSVTDKSVKDDVTSADSVSE----VSNVGLNTDTRSEEKKETGSEKVP 326          
The following BLAST results are available for this feature:
BLAST of EWM22090.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102507|gb|EWM22090.1|0.000e+0100.00BSD domain-containing protein [Nannochloropsis gad... [more]
gi|565385053|ref|XP_006358434.1|4.406e-829.75PREDICTED: BSD domain-containing protein 1 [Solanu... [more]
gi|1063466035|ref|XP_017969770.1|6.323e-832.56PREDICTED: BSD domain-containing protein 1 [Theobr... [more]
gi|727429897|ref|XP_010481925.1|6.546e-829.95PREDICTED: BSD domain-containing protein 1-like [C... [more]
gi|1204896294|ref|XP_021280077.1|2.286e-732.56BSD domain-containing protein 1 [Herrania umbratic... [more]
gi|1028963294|ref|XP_016725150.1|3.408e-732.03PREDICTED: BSD domain-containing protein 1-like [G... [more]
gi|1050588360|ref|XP_017615494.1|3.628e-732.03PREDICTED: BSD domain-containing protein 1-like [G... [more]
gi|1029108493|ref|XP_016717448.1|4.374e-732.03PREDICTED: BSD domain-containing protein 1-like [G... [more]
gi|1124037492|ref|XP_019577038.1|4.428e-728.28PREDICTED: BSD domain-containing protein 1-like [R... [more]
gi|1072909223|ref|XP_018441205.1|6.953e-728.90PREDICTED: BSD domain-containing protein 1 [Raphan... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8616rna8616Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications