EWM22107.1, cds8565 (CDS) Nannochloropsis gaditana

Overview
NameEWM22107.1
Unique Namecds8565
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:353801..355036 +

Link to JBrowse

Properties
Property NameValue
Start range353801
Start range.
Protein idEWM22107.1
Producthistone deacetylase
Partialtrue
Orig transcript idgnl|cribi|Naga_100752g1.1348.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:353801..355036 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0070403NAD+ binding
Vocabulary: INTERPRO
TermDefinition
IPR026590Ssirtuin_cat_dom
IPR003000Sirtuin
IPR029035DHS-like_NAD/FAD-binding_dom
Homology
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|585102526|gb|EWM22107.1| (histone deacetylase, partial [Nannochloropsis gaditana])

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0
Query:    1 GEGEGGERRVPEAGGGWRGLIKPDIIFFGESLGDKFSTAMEYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEEEGEEGGGGGGEGWEFAGQNRYYFVNAKRPVEETSGEERGEEEGEGGIVEEEVEREEEEVSCPLPVVAHHEGETETEAAAVEAEEVAARRRKEEDWEVGPGVLRRAEGRREGGREGGWEGGGAPGSGTAMPPEGLSESEPLTVDPVAPHHQQLLPLFPALAVPQSPHHGQDLSSFLPPALLSPLNSPLLPSVEGRRRGEEEEGKKCRGGPGTEWGSKSGTPRSKDSPGGLRGLPSPSCQPSPFTLQPMSPRSNTLVSTPRGGTMTLMGREGGAEEEASGREGGGRLAELEREAFYLP 411
            GEGEGGERRVPEAGGGWRGLIKPDIIFFGESLGDKFSTAMEYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEEEGEEGGGGGGEGWEFAGQNRYYFVNAKRPVEETSGEERGEEEGEGGIVEEEVEREEEEVSCPLPVVAHHEGETETEAAAVEAEEVAARRRKEEDWEVGPGVLRRAEGRREGGREGGWEGGGAPGSGTAMPPEGLSESEPLTVDPVAPHHQQLLPLFPALAVPQSPHHGQDLSSFLPPALLSPLNSPLLPSVEGRRRGEEEEGKKCRGGPGTEWGSKSGTPRSKDSPGGLRGLPSPSCQPSPFTLQPMSPRSNTLVSTPRGGTMTLMGREGGAEEEASGREGGGRLAELEREAFYLP
Sbjct:    1 GEGEGGERRVPEAGGGWRGLIKPDIIFFGESLGDKFSTAMEYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEEEGEEGGGGGGEGWEFAGQNRYYFVNAKRPVEETSGEERGEEEGEGGIVEEEVEREEEEVSCPLPVVAHHEGETETEAAAVEAEEVAARRRKEEDWEVGPGVLRRAEGRREGGREGGWEGGGAPGSGTAMPPEGLSESEPLTVDPVAPHHQQLLPLFPALAVPQSPHHGQDLSSFLPPALLSPLNSPLLPSVEGRRRGEEEEGKKCRGGPGTEWGSKSGTPRSKDSPGGLRGLPSPSCQPSPFTLQPMSPRSNTLVSTPRGGTMTLMGREGGAEEEASGREGGGRLAELEREAFYLP 411          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|551661824|ref|XP_005833678.1| (hypothetical protein GUITHDRAFT_40776, partial [Guillardia theta CCMP2712] >gi|428177820|gb|EKX46698.1| hypothetical protein GUITHDRAFT_40776, partial [Guillardia theta CCMP2712])

HSP 1 Score: 120.939 bits (302), Expect = 9.643e-28
Identity = 56/93 (60.22%), Postives = 76/93 (81.72%), Query Frame = 0
Query:   19 GLIKPDIIFFGESLGDKFSTAMEYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWE 111
            G++KPDI+FFGE+L + F +++  D + VDL++V+G+SL+V PV++IL  + A VP +LINREVVGAPN+FDVELLGDCDAVV EL   LGW+
Sbjct:  202 GVLKPDIVFFGEALPNHFFSSLREDLRLVDLVVVIGTSLRVAPVSEILGEVEASVPAILINREVVGAPNQFDVELLGDCDAVVGELCCMLGWD 294          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|831756224|ref|XP_012748657.1| (hypothetical protein SAMD00019534_115160, partial [Acytostelium subglobosum LB1] >gi|735849486|dbj|GAM28340.1| hypothetical protein SAMD00019534_115160, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 114.005 bits (284), Expect = 4.158e-27
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   20 LIKPDIIFFGESLGDKFSTAMEYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGW 110
             +KPDI+FFGESL D F   +  DK +VDLL+V+GSSLKV PV  I + L A +PQ+L+NRE+VG P++FD   LGDCD  VR+L  +LGW
Sbjct:   25 FMKPDIVFFGESLPDVFDQCIANDKDKVDLLIVMGSSLKVQPVALIPEILNANIPQILVNRELVGQPHQFDYAYLGDCDDFVRDLENKLGW 115          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|528893345|gb|EPZ33665.1| (Sirtuin family, catalytic core small domain-containing protein [Rozella allomycis CSF55])

HSP 1 Score: 122.479 bits (306), Expect = 1.265e-26
Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 0
Query:   10 VPEAGGGWRGLIKPDIIFFGESLGDKFSTAMEYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEG-LEEEGEEGGGGGGEGWEFAGQNRYYFVNAKRPVE 146
            VP+     +G+IKPDI+FFGE L   F  A+  DK +VDL++V+GSSLKV PV  IL+++P  VPQV INRE     + FDVELLG+CD ++  L    GW+  LE+  E          EF   +RY F +A+ P++
Sbjct:  300 VPKCSTCEQGVIKPDIVFFGEKLPSTFDDALNSDKIQVDLVIVIGSSLKVQPVASILEYIPPNVPQVYINRETCRH-HEFDVELLGNCDEIIVNLCQMAGWDSYLEKISEFSCSYISNTIEFFRPHRYLFASARVPIK 436          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|672795339|gb|KFH45897.1| (NAD-dependent protein deacetylase-like protein [Acremonium chrysogenum ATCC 11550])

HSP 1 Score: 120.168 bits (300), Expect = 4.110e-26
Identity = 57/121 (47.11%), Postives = 85/121 (70.25%), Query Frame = 0
Query:   19 GLIKPDIIFFGESLGDKFSTAM-EYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEEEGEEGGGGGGEGWEFAGQNRYYF 138
            G++KPDIIFFGE L D+FS  + E+D+ +VDL++V+G+SLKV PV++I+ WLP+ +PQ+ ++R+ V   N FD++LLGDCD V+ EL  RLGW+ L  E  +   G     E   ++R+ F
Sbjct:  376 GIMKPDIIFFGEPLPDEFSKRLTEHDRDKVDLVIVIGTSLKVTPVSEIVSWLPSHIPQIYVSRQAVNHIN-FDIDLLGDCDVVITELCRRLGWD-LNHEMVDPAAGIDVRTEEGYKSRHVF 494          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|1092958947|ref|XP_018748330.1| (NAD-dependent histone deacetylase SIR2 [Fusarium verticillioides 7600] >gi|1092958949|ref|XP_018748331.1| NAD-dependent histone deacetylase SIR2 [Fusarium verticillioides 7600] >gi|584132756|gb|EWG42139.1| NAD-dependent histone deacetylase SIR2 [Fusarium verticillioides 7600] >gi|584132757|gb|EWG42140.1| NAD-dependent histone deacetylase SIR2 [Fusarium verticillioides 7600])

HSP 1 Score: 117.857 bits (294), Expect = 8.111e-26
Identity = 53/98 (54.08%), Postives = 76/98 (77.55%), Query Frame = 0
Query:   19 GLIKPDIIFFGESLGDKFSTAM-EYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEE 115
            G++KPDI FFGE+L D+FS  + E+D+ +VDL++V+G+SLKV PV++I+ WLPA +PQ+ ++R+ V   N FD++LLGDCD VV EL  RLGW  + E
Sbjct:  283 GVMKPDITFFGEALPDEFSRRLTEHDRDKVDLVIVIGTSLKVTPVSEIVSWLPANIPQIYVSRQAVNHIN-FDIDLLGDCDVVVSELCRRLGWPMVHE 379          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|1111503314|emb|CVK93616.1| (related to NAD-dependent histone deacetylase [Fusarium mangiferae])

HSP 1 Score: 118.242 bits (295), Expect = 1.666e-25
Identity = 53/98 (54.08%), Postives = 76/98 (77.55%), Query Frame = 0
Query:   19 GLIKPDIIFFGESLGDKFSTAM-EYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEE 115
            G++KPDI FFGE+L D+FS  + E+D+ +VDL++V+G+SLKV PV++I+ WLPA +PQ+ ++R+ V   N FD++LLGDCD VV EL  RLGW  + E
Sbjct:  362 GVMKPDITFFGEALPDEFSRRLTEHDRDKVDLVIVIGTSLKVTPVSEIVSWLPANIPQIYVSRQAVNHIN-FDIDLLGDCDVVVSELCRRLGWPMVHE 458          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|531989596|emb|CCT64400.1| (related to NAD-dependent histone deacetylase [Fusarium fujikuroi IMI 58289] >gi|829108935|gb|KLO85491.1| NAD-dependent histone deacetylase [Fusarium fujikuroi] >gi|829127899|gb|KLP02835.1| NAD-dependent histone deacetylase [Fusarium fujikuroi] >gi|1111490984|emb|CZR36601.1| related to NAD-dependent histone deacetylase [Fusarium proliferatum ET1])

HSP 1 Score: 118.242 bits (295), Expect = 1.817e-25
Identity = 53/98 (54.08%), Postives = 76/98 (77.55%), Query Frame = 0
Query:   19 GLIKPDIIFFGESLGDKFSTAM-EYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEE 115
            G++KPDI FFGE+L D+FS  + E+D+ +VDL++V+G+SLKV PV++I+ WLPA +PQ+ ++R+ V   N FD++LLGDCD VV EL  RLGW  + E
Sbjct:  362 GVMKPDITFFGEALPDEFSRRLTEHDRDKVDLVIVIGTSLKVTPVSEIVSWLPANIPQIYVSRQAVNHIN-FDIDLLGDCDVVVSELCRRLGWPMVHE 458          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|1111472219|emb|CVK97320.1| (related to NAD-dependent histone deacetylase [Fusarium proliferatum])

HSP 1 Score: 117.857 bits (294), Expect = 1.908e-25
Identity = 53/98 (54.08%), Postives = 76/98 (77.55%), Query Frame = 0
Query:   19 GLIKPDIIFFGESLGDKFSTAM-EYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEE 115
            G++KPDI FFGE+L D+FS  + E+D+ +VDL++V+G+SLKV PV++I+ WLPA +PQ+ ++R+ V   N FD++LLGDCD VV EL  RLGW  + E
Sbjct:  362 GVMKPDITFFGEALPDEFSRRLTEHDRDKVDLVIVIGTSLKVTPVSEIVSWLPANIPQIYVSRQAVNHIN-FDIDLLGDCDVVVSELCRRLGWPMVHE 458          
BLAST of EWM22107.1 vs. NCBI_GenBank
Match: gi|829157797|gb|KLP23426.1| (NAD-dependent histone deacetylase [Fusarium fujikuroi])

HSP 1 Score: 117.857 bits (294), Expect = 1.908e-25
Identity = 53/98 (54.08%), Postives = 76/98 (77.55%), Query Frame = 0
Query:   19 GLIKPDIIFFGESLGDKFSTAM-EYDKQRVDLLLVLGSSLKVGPVNKILQWLPARVPQVLINREVVGAPNRFDVELLGDCDAVVRELWARLGWEGLEE 115
            G++KPDI FFGE+L D+FS  + E+D+ +VDL++V+G+SLKV PV++I+ WLPA +PQ+ ++R+ V   N FD++LLGDCD VV EL  RLGW  + E
Sbjct:  362 GVMKPDITFFGEALPDEFSRRLTEHDRDKVDLVIVIGTSLKVTPVSEIVSWLPANIPQIYVSRQAVNHIN-FDIDLLGDCDVVVSELCRRLGWPMVHE 458          
The following BLAST results are available for this feature:
BLAST of EWM22107.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102526|gb|EWM22107.1|0.000e+0100.00histone deacetylase, partial [Nannochloropsis gadi... [more]
gi|551661824|ref|XP_005833678.1|9.643e-2860.22hypothetical protein GUITHDRAFT_40776, partial [Gu... [more]
gi|831756224|ref|XP_012748657.1|4.158e-2757.14hypothetical protein SAMD00019534_115160, partial ... [more]
gi|528893345|gb|EPZ33665.1|1.265e-2644.93Sirtuin family, catalytic core small domain-contai... [more]
gi|672795339|gb|KFH45897.1|4.110e-2647.11NAD-dependent protein deacetylase-like protein [Ac... [more]
gi|1092958947|ref|XP_018748330.1|8.111e-2654.08NAD-dependent histone deacetylase SIR2 [Fusarium v... [more]
gi|1111503314|emb|CVK93616.1|1.666e-2554.08related to NAD-dependent histone deacetylase [Fusa... [more]
gi|531989596|emb|CCT64400.1|1.817e-2554.08related to NAD-dependent histone deacetylase [Fusa... [more]
gi|1111472219|emb|CVK97320.1|1.908e-2554.08related to NAD-dependent histone deacetylase [Fusa... [more]
gi|829157797|gb|KLP23426.1|1.908e-2554.08NAD-dependent histone deacetylase [Fusarium fujiku... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8592rna8592Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications