EWM22113.1, cds8558 (CDS) Nannochloropsis gaditana

Overview
NameEWM22113.1
Unique Namecds8558
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:341960..342179 +
Alignment locationKK037249.1:342397..343262 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22113.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100060g9.5481.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:341960..342179 +
KK037249.1supercontigKK037249.1:342397..343262 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22113.1 vs. NCBI_GenBank
Match: gi|585102533|gb|EWM22113.1| (hypothetical protein Naga_100060g9 [Nannochloropsis gaditana])

HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0 
Query:    1 MTQPHLSARRIVPALAISILLVANGGTASAARSFLLKSQHTFAKASNKKGSHMHDESKVPVIVRLALQYRGGESSSLTKAAEHNASATDESAASSLRDVDASEEEEGSQGVEGEAEADPPTEEDEGRAAAGAPGEGAGEGEDEDDAFQDAVAPDVAPVAEKEEAKHAVEGEEGEEEDGAAAAVATVSQELSGPETVRRQRAETGGNMKKDKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRKDFHLRRRGWDALQAGLVQAARRLVEEPRVLLRQVGLVAVAAVGAGAARRWMEARRAGEEEEEWEWVEMTPWEEFVDRWQRRLPGRGRGARGKQ 361
            MTQPHLSARRIVPALAISILLVANGGTASAARSFLLKSQHTFAKASNKKGSHMHDESKVPVIVRLALQYRGGESSSLTKAAEHNASATDESAASSLRDVDASEEEEGSQGVEGEAEADPPTEEDEGRAAAGAPGEGAGEGEDEDDAFQDAVAPDVAPVAEKEEAKHAVEGEEGEEEDGAAAAVATVSQELSGPETVRRQRAETGGNMKKDKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRKDFHLRRRGWDALQAGLVQAARRLVEEPRVLLRQVGLVAVAAVGAGAARRWMEARRAGEEEEEWEWVEMTPWEEFVDRWQRRLPGRGRGARGKQ
Sbjct:    1 MTQPHLSARRIVPALAISILLVANGGTASAARSFLLKSQHTFAKASNKKGSHMHDESKVPVIVRLALQYRGGESSSLTKAAEHNASATDESAASSLRDVDASEEEEGSQGVEGEAEADPPTEEDEGRAAAGAPGEGAGEGEDEDDAFQDAVAPDVAPVAEKEEAKHAVEGEEGEEEDGAAAAVATVSQELSGPETVRRQRAETGGNMKKDKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRKDFHLRRRGWDALQAGLVQAARRLVEEPRVLLRQVGLVAVAAVGAGAARRWMEARRAGEEEEEWEWVEMTPWEEFVDRWQRRLPGRGRGARGKQ 361
[Close]
BLAST of EWM22113.1 vs. NCBI_GenBank
Match: gi|298705016|emb|CBJ28491.1| (hypothetical protein Esi_0107_0030 [Ectocarpus siliculosus])

HSP 1 Score: 79.337 bits (194), Expect = 2.821e-13
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 
Query:  210 DKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRKDFH 271
            D+YNA+MQ +IT  M+KVL +EL Y A EV+ M P +AAVVI K L RP+ GMP  WR+   
Sbjct:   68 DRYNARMQVIITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIR 129
The following BLAST results are available for this feature:
BLAST of EWM22113.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102533|gb|EWM22113.1|0.000e+0100.00hypothetical protein Naga_100060g9 [Nannochloropsi... [more]
gi|298705016|emb|CBJ28491.1|2.821e-1354.84hypothetical protein Esi_0107_0030 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8585rna8585Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications