EWM22133.1, cds8552 (CDS) Nannochloropsis gaditana

Overview
NameEWM22133.1
Unique Namecds8552
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:326078..326827 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22133.1
Productnadh dehydrogenase
Orig transcript idgnl|cribi|Naga_100060g15.5501.mrna
GeneNDA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:326078..326827 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016651oxidoreductase activity, acting on NAD(P)H
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0022900electron transport chain
Vocabulary: INTERPRO
TermDefinition
IPR006885NADH_UbQ_FeS_4_mit
Homology
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|585102553|gb|EWM22133.1| (nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MQSSLMACGRLGTSRLQVTAPATHHLWYRCLSAPPQKPPPPPSPEELEKMVSASESHVKEIRAGTMKKVQPYLVADVPDLPTYLPQKEEEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTKQFTNPGYTASNWFQPLKYHGDGECEQHGPPREGAKKK 249
            MQSSLMACGRLGTSRLQVTAPATHHLWYRCLSAPPQKPPPPPSPEELEKMVSASESHVKEIRAGTMKKVQPYLVADVPDLPTYLPQKEEEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTKQFTNPGYTASNWFQPLKYHGDGECEQHGPPREGAKKK
Sbjct:    1 MQSSLMACGRLGTSRLQVTAPATHHLWYRCLSAPPQKPPPPPSPEELEKMVSASESHVKEIRAGTMKKVQPYLVADVPDLPTYLPQKEEEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTKQFTNPGYTASNWFQPLKYHGDGECEQHGPPREGAKKK 249          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|298709841|emb|CBJ26181.1| (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus])

HSP 1 Score: 139.043 bits (349), Expect = 7.985e-37
Identity = 70/162 (43.21%), Postives = 97/162 (59.88%), Query Frame = 0
Query:   84 LPQKEEEMAVLNEQPANQRARKVTIRQKAQTAMQSA-ANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTKQFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
             P+  EE   L+  P     RKV I QK++ A  +  A   Y W +++  +ERWSNPLMGWTST DP+SN QL+F T E+A +F +++GW   ++    RE V G   Y+ NFL  +VE+ LK  GTKT+QFT P   AS++ +PL + G     QHG P +
Sbjct:   79 FPENPEEALALDPLPPTVAGRKVIIAQKSKPATTTGTAGGLYGWNLTFKQKERWSNPLMGWTSTGDPMSNMQLSFSTPEQAVKFCQKRGWKYEVKAPAKREAVFGKFAYSHNFLPHNVEHDLKVNGTKTQQFTFPTAGASHYERPLNFVGTAPVRQHGNPEQ 240          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|1173941773|gb|OQR90878.1| (NADH dehydrogenase, ubiquinone iron-sulfur protein 4 [Thraustotheca clavata])

HSP 1 Score: 134.035 bits (336), Expect = 5.076e-35
Identity = 68/157 (43.31%), Postives = 91/157 (57.96%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTK-QFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
            +E AV+N      + RK  I   A+  MQS    ++ W I +G+++ W NPLMGWTS ADP+    L F+T EEA  FA+RQGW+  + P   +E   G   Y+ NFL  DVENKLK+ G K    F +     S+W + LKYHG+GE  QHG  +E
Sbjct:   68 KECAVVNAVGGWTKGRKAIIFMPARNQMQSGDYNTHHWEIRFGTRQTWQNPLMGWTSGADPIDALTLKFNTKEEALEFAQRQGWSTEVMPVAEKEDFDGKIAYSHNFLPLDVENKLKKYGKKAAPHFKHAKGGHSHWVKTLKYHGNGEVVQHGGDKE 224          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|1173951106|gb|OQR99019.1| (NADH dehydrogenase ubiquinone iron-sulfur protein 4 [Achlya hypogyna])

HSP 1 Score: 129.798 bits (325), Expect = 1.999e-33
Identity = 66/157 (42.04%), Postives = 91/157 (57.96%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTK-QFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
            +E AV+N      + RK  I   A+  MQS    ++ W I +G+++ W NPLMGWTS ADP+    + F+T EEA  FA+RQGW+  + P   +E   G   Y+ NFL  DVENKLK+ G K    F +     S+W + LKY+G+GE  QHG  +E
Sbjct:   70 KECAVVNFVGEWTKGRKAIIYMPARNQMQSGDYNTHHWEIRFGTRQTWQNPLMGWTSGADPMDAMVMKFNTKEEAVAFAQRQGWSTEVMPVAEKEDFEGKIAYSHNFLPLDVENKLKKYGKKAAPHFKHAAGGHSHWVKTLKYNGNGEVVQHGGDKE 226          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|669156964|ref|XP_008614044.1| (hypothetical protein SDRG_09866 [Saprolegnia diclina VS20] >gi|530734301|gb|EQC32543.1| hypothetical protein SDRG_09866 [Saprolegnia diclina VS20])

HSP 1 Score: 127.872 bits (320), Expect = 1.468e-32
Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTK-TKQFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
            +E +V+N      + RK  I    +  MQS    ++ W I +G+++ W NPLMGWTS ADP+    + F+T EEA  FA RQGW+  + P   +E   G   Y+ NFL  DVENKLK+ G K +  F +     S+W + LKY+G+GE  QHG  +E
Sbjct:   71 KECSVVNFVGEWTKGRKAIIYMPCRNQMQSGDYNTHHWEIRFGTRQTWQNPLMGWTSGADPMDAMVMKFNTKEEAVAFATRQGWSTEVMPVAEKEDFEGKIAYSHNFLPVDVENKLKKYGKKASSHFKHAAGGHSHWVKTLKYNGNGEVVQHGGDKE 227          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|813120012|ref|XP_012196384.1| (hypothetical protein SPRG_02418 [Saprolegnia parasitica CBS 223.65] >gi|641538899|gb|KDO32720.1| hypothetical protein SPRG_02418 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 127.102 bits (318), Expect = 2.276e-32
Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTK-TKQFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
            +E +V+N      + RK  I    +  MQS    ++ W I +G+++ W NPLMGWTS ADP+    + F+T EEA  FA RQGW+  + P   +E   G   Y+ NFL  DVENKLK+ G K +  F +     S+W + LKY+G+GE  QHG  +E
Sbjct:   71 KECSVVNFVGEWTKGRKAIIYMPCRNQMQSGDYNTHHWEIRFGTRQTWQNPLMGWTSGADPMDAMVMKFNTKEEAVAFATRQGWSTEVMPVAEKEDFEGKIAYSHNFLPVDVENKLKKYGKKASVHFKHAAGGHSHWVKTLKYNGNGEVVQHGGDKE 227          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|301100676|ref|XP_002899427.1| (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, putative [Phytophthora infestans T30-4] >gi|262103735|gb|EEY61787.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, putative [Phytophthora infestans T30-4])

HSP 1 Score: 120.553 bits (301), Expect = 1.225e-29
Identity = 65/153 (42.48%), Postives = 85/153 (55.56%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTK-QFTNPGYTASNWFQPLKYHGDGECEQHG 240
            EE A+++        RK  + + A+  MQS  +++  W I + S   W NPLMGWTSTADP       FDT EEA RFAK+QGW + I          G   Y+ NFL E VE  +K++G K+  QF +P    SNW + LKYHG+G   QHG
Sbjct:   85 EEAAIMSGTGEWSVGRKANLFKPARNQMQSGIHQTKHWEIRFSSPRTWENPLMGWTSTADPYIGLVTKFDTKEEAERFAKKQGWELEITEPAPVGDYYGKISYSHNFLPEHVETLIKQKGKKSAVQFKHPTGRQSNWVKTLKYHGNGVVAQHG 237          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|675186977|ref|XP_008902373.1| (hypothetical protein PPTG_09242 [Phytophthora parasitica INRA-310] >gi|566028752|gb|ETI51663.1| hypothetical protein F443_05022 [Phytophthora parasitica P1569] >gi|567994847|gb|ETL44996.1| hypothetical protein L916_04840 [Phytophthora parasitica] >gi|568054517|gb|ETM51296.1| hypothetical protein L914_04844 [Phytophthora parasitica] >gi|568097657|gb|ETN12399.1| hypothetical protein PPTG_09242 [Phytophthora parasitica INRA-310] >gi|570332469|gb|ETO80417.1| hypothetical protein F444_05072 [Phytophthora parasitica P1976] >gi|570956453|gb|ETP21447.1| hypothetical protein F441_05029 [Phytophthora parasitica CJ01A1] >gi|970651767|gb|KUF90536.1| NADH dehydrogenase iron-sulfur protein 4 [Phytophthora nicotianae] >gi|970658457|gb|KUF96218.1| Branchpoint-bridging protein [Phytophthora nicotianae])

HSP 1 Score: 120.553 bits (301), Expect = 1.392e-29
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTK-QFTNPGYTASNWFQPLKYHGDGECEQHG 240
            EE A+++        RK  + + A+  MQS  +++  W I + S   W NPLMGWTSTADP       FDT EEA RFAK+QGW + IE         G   Y+ NFL E +E  +K++G K+  QF +P    SNW + LK+HG+G   QHG
Sbjct:   85 EEAAIVSGTGEWSVGRKAKLFKPARNQMQSGIHQTKHWEIRFTSPRTWENPLMGWTSTADPYVGMVTKFDTKEEAERFAKKQGWELEIEEPAPVGDYYGKISYSHNFLPEHIETLIKQKGKKSAVQFKHPTGRRSNWVKTLKFHGNGVVAQHG 237          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|568024113|gb|ETL98155.1| (hypothetical protein L917_04739 [Phytophthora parasitica] >gi|570964737|gb|ETP27856.1| hypothetical protein F442_22858 [Phytophthora parasitica P10297])

HSP 1 Score: 120.168 bits (300), Expect = 1.483e-29
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTK-QFTNPGYTASNWFQPLKYHGDGECEQHG 240
            EE A+++        RK  + + A+  MQS  +++  W I + S   W NPLMGWTSTADP       FDT EEA RFAK+QGW + IE         G   Y+ NFL E +E  +K++G K+  QF +P    SNW + LK+HG+G   QHG
Sbjct:   85 EEAAIVSGTGEWSVGRKAKLFKPARNQMQSGIHQTKHWEIRFTSPRTWENPLMGWTSTADPYVGMVTKFDTKEEAERFAKKQGWELEIEEPAPVGDYYGKISYSHNFLPEHIETLIKQKGKKSAVQFKHPTGRRSNWVKTLKFHGNGVVAQHG 237          
BLAST of EWM22133.1 vs. NCBI_GenBank
Match: gi|567966134|gb|ETK91590.1| (hypothetical protein L915_04893 [Phytophthora parasitica])

HSP 1 Score: 118.242 bits (295), Expect = 9.414e-29
Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 0
Query:   89 EEMAVLNEQPANQRARKVTIRQKAQTAMQSAANKSYPWYISWGSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTK-QFTNPGYTASNWFQPLKYHGDGECEQHG 240
            EE A+++        RK  + + A+  MQS  +++  W I + S   W NPLMGWTSTADP       FDT EEA RFAK+QGW + IE         G   Y+ NFL E +E  +K++G K+  QF +P    SNW + L +HG+G   QHG
Sbjct:   85 EEAAIVSGTGEWSVGRKAKLFKPARNQMQSGIHQTKHWEIRFTSPRTWENPLMGWTSTADPYVGMVTKFDTKEEAERFAKKQGWELEIEEPAPVGDYYGKISYSHNFLPEHIETLIKQKGKKSAVQFKHPTGRRSNWVKTLMFHGNGVVAQHG 237          
The following BLAST results are available for this feature:
BLAST of EWM22133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102553|gb|EWM22133.1|0.000e+0100.00nadh dehydrogenase [Nannochloropsis gaditana][more]
gi|298709841|emb|CBJ26181.1|7.985e-3743.21NADH dehydrogenase (ubiquinone) [Ectocarpus silicu... [more]
gi|1173941773|gb|OQR90878.1|5.076e-3543.31NADH dehydrogenase, ubiquinone iron-sulfur protein... [more]
gi|1173951106|gb|OQR99019.1|1.999e-3342.04NADH dehydrogenase ubiquinone iron-sulfur protein ... [more]
gi|669156964|ref|XP_008614044.1|1.468e-3240.76hypothetical protein SDRG_09866 [Saprolegnia dicli... [more]
gi|813120012|ref|XP_012196384.1|2.276e-3240.76hypothetical protein SPRG_02418 [Saprolegnia paras... [more]
gi|301100676|ref|XP_002899427.1|1.225e-2942.48NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
gi|675186977|ref|XP_008902373.1|1.392e-2941.83hypothetical protein PPTG_09242 [Phytophthora para... [more]
gi|568024113|gb|ETL98155.1|1.483e-2941.83hypothetical protein L917_04739 [Phytophthora para... [more]
gi|567966134|gb|ETK91590.1|9.414e-2941.18hypothetical protein L915_04893 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8579rna8579Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications