EWM22117.1, cds8542 (CDS) Nannochloropsis gaditana

Overview
NameEWM22117.1
Unique Namecds8542
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:297690..297923 -
Alignment locationKK037249.1:296977..297480 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22117.1
Producttho complex subunit-like protein
Orig transcript idgnl|cribi|Naga_100060g26.5485.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:297690..297923 -
KK037249.1supercontigKK037249.1:296977..297480 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000445THO complex part of transcription export complex
Vocabulary: INTERPRO
TermDefinition
IPR008501THOC7/Mft1
Homology
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|585102537|gb|EWM22117.1| (tho complex subunit-like protein [Nannochloropsis gaditana])

HSP 1 Score: 484.952 bits (1247), Expect = 5.608e-173
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MIDRKIFEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGDEDEEDEESEMQMD 245
            MIDRKIFEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGDEDEEDEESEMQMD
Sbjct:    1 MIDRKIFEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGDEDEEDEESEMQMD 245          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|831773736|ref|XP_012754000.1| (hypothetical protein SAMD00019534_059480, partial [Acytostelium subglobosum LB1] >gi|735854632|dbj|GAM22773.1| hypothetical protein SAMD00019534_059480, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 72.7886 bits (177), Expect = 7.957e-12
Identity = 57/193 (29.53%), Postives = 91/193 (47.15%), Query Frame = 0
Query:    7 FEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYD 199
             +D    K   I   T + +   ++ AFV     A   + A TP        E     + AL+ EL+L   ++ KA  +     +E + +     T  Q   RV+AE+V LKERL  E+  R  +E+Y AL KL+N  P+   T     KV  E+ A+ E+  R  + + MR +Q   +L+ V++L+  L+ D
Sbjct:   17 MDDDAPLKRRLIAKETPMKKAFKKYLAFV-----ATLENSASTP--------EQCQAAHQALLSELSLFEFQVQKATVLCDVNKKEMDYYSTLYSTRGQDIERVKAELVELKERLAHEKIQRQYKEQYLALYKLINDKPSIPDTEREIAKVKKELEAIMEQGTRTNEKLEMRTKQFQLLLHTVQELEQSLDTD 196          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1050598557|ref|XP_017618163.1| (PREDICTED: THO complex subunit 7A-like [Gossypium arboreum] >gi|728849147|gb|KHG28590.1| THO complex subunit 7 [Gossypium arboreum])

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-11
Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query:   67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
            A ++EL+   + + K++AV     RE+E F    D I +Q + V+ +I  LK++L   +  R  +EE EA+ KL++  P +++T     ++  EIAALE E     + + +RK+Q + +L+ V +L+N +E D ++  E+ R + E+
Sbjct:   77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIIEIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|702328474|ref|XP_010053982.1| (PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|702328480|ref|XP_010053983.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|702328484|ref|XP_010053984.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|702328490|ref|XP_010053985.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|1091467536|ref|XP_018727986.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|629113396|gb|KCW78356.1| hypothetical protein EUGRSUZ_D02531 [Eucalyptus grandis] >gi|629113397|gb|KCW78357.1| hypothetical protein EUGRSUZ_D02531 [Eucalyptus grandis])

HSP 1 Score: 72.4034 bits (176), Expect = 1.363e-11
Identity = 48/147 (32.65%), Postives = 85/147 (57.82%), Query Frame = 0
Query:   67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
            A ++EL+   + + K++AV ++  RE++ F    D I +Q  + +A+I  LK++L   +  R  +EE EA+ KL+   P +++T    T++  EIAALE E     + + +RK+Q + +L+ V DL+  LE D +   E+ R  AE+
Sbjct:   77 AFLQELSTFEIPLLKSKAVVSSNVREKDNFNELKDEINRQILQAQADIEELKKQLEESKIERKHKEECEAIRKLIAMQPPRSETQKIITELEREIAALEAENTASSRMLELRKKQFALLLHVVEDLQTTLEEDQKNLIEEMRIAAEE 223          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1029107086|ref|XP_016710565.1| (PREDICTED: THO complex subunit 7A-like [Gossypium hirsutum])

HSP 1 Score: 72.0182 bits (175), Expect = 1.649e-11
Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query:   67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
            A ++EL+   + + K++AV     RE+E F    D I +Q + V+ +I  LK++L   +  R  +EE EA+ KL++  P +++T     ++  EIAALE E     + + +RK+Q + +L+ V +L+N +E D ++  E+ R + E+
Sbjct:   77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIREIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1029125016|ref|XP_016740908.1| (PREDICTED: THO complex subunit 7A-like [Gossypium hirsutum])

HSP 1 Score: 72.0182 bits (175), Expect = 1.734e-11
Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query:   67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
            A ++EL+   + + K++AV     RE+E F    D I +Q + V+ +I  LK++L   +  R  +EE EA+ KL++  P +++T     ++  EIAALE E     + + +RK+Q + +L+ V +L+N +E D ++  E+ R + E+
Sbjct:   77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIREIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|823140358|ref|XP_012470027.1| (PREDICTED: THO complex subunit 7A-like [Gossypium raimondii] >gi|763751069|gb|KJB18457.1| hypothetical protein B456_003G054000 [Gossypium raimondii])

HSP 1 Score: 72.0182 bits (175), Expect = 1.787e-11
Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query:   67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
            A ++EL+   + + K++AV     RE+E F    D I +Q + V+ +I  LK++L   +  R  +EE EA+ KL++  P +++T     ++  EIAALE E     + + +RK+Q + +L+ V +L+N +E D ++  E+ R + E+
Sbjct:   77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIREIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|720092404|ref|XP_010245729.1| (PREDICTED: THO complex subunit 7B-like [Nelumbo nucifera])

HSP 1 Score: 70.4774 bits (171), Expect = 5.827e-11
Identity = 47/149 (31.54%), Postives = 84/149 (56.38%), Query Frame = 0
Query:   65 YDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
            Y A ++E+T   L + K++AV     RE+E F      I +Q  + +++I  LK++L   +  R  +EE EA+ KLV   PA+++T    T +  EIA LE E     + + +RK+Q + +L+ V +L+N +E + ++  E++R   E+
Sbjct:   75 YKAFLQEMTTFELPLLKSKAVIDANLREKENFNELQGEIQRQILQTQSDIEDLKKQLEESKIERQHKEECEAIRKLVAMQPARSETQKLITDLEKEIALLEAESTAASRTLELRKKQFALLLHVVDELQNNIEEEQKSLAEEQRIAMEE 223          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1204900965|ref|XP_021282615.1| (THO complex subunit 7A [Herrania umbratica])

HSP 1 Score: 70.0922 bits (170), Expect = 7.260e-11
Identity = 45/147 (30.61%), Postives = 86/147 (58.50%), Query Frame = 0
Query:   67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
            A ++EL+   + + K++AV  +  RE+E F    D I +Q  + + +I  LK++L   +  R  +EE EA+ KL++  P +++T    T++  EIAALE E     + + +RK+Q + +L+ V +L+N +E + ++  E+ R + E+
Sbjct:   77 AFLQELSTFEIPLLKSKAVIDSNLREKENFNELKDEINRQILQAQTDIEDLKKQLEESKIERQHKEECEAIRKLISAPPPRSETQKSITELEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEEQKSLIEEMRMVTEE 223          
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|218197297|gb|EEC79724.1| (hypothetical protein OsI_21047 [Oryza sativa Indica Group])

HSP 1 Score: 70.0922 bits (170), Expect = 8.405e-11
Identity = 52/168 (30.95%), Postives = 92/168 (54.76%), Query Frame = 0
Query:   65 YDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGD 232
            Y A ++E+    L + K++AV     RE+E F    D I +Q  + + +I  LK++LV  R  RL +EE EA+ K+++  P +++T      +  EIA LE E     + + +RK+QLS +L+ V +L+  +       E+++R +A++  A A+ ++     EG GD
Sbjct:   75 YKAFLQEINAFVLPLLKSKAVVDANLREKESFTELQDEIQRQILQAQTDIEELKKKLVQSRIERLYKEECEAIRKMISLQPPRSETEKLIAGLEKEIANLEAENTACIRTLELRKKQLSLLLHVVEELQISI-------EDEQRSIADELRAGAEEQQNMSTDEGSGD 235          
The following BLAST results are available for this feature:
BLAST of EWM22117.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102537|gb|EWM22117.1|5.608e-173100.00tho complex subunit-like protein [Nannochloropsis ... [more]
gi|831773736|ref|XP_012754000.1|7.957e-1229.53hypothetical protein SAMD00019534_059480, partial ... [more]
gi|1050598557|ref|XP_017618163.1|1.184e-1131.29PREDICTED: THO complex subunit 7A-like [Gossypium ... [more]
gi|702328474|ref|XP_010053982.1|1.363e-1132.65PREDICTED: THO complex subunit 7A [Eucalyptus gran... [more]
gi|1029107086|ref|XP_016710565.1|1.649e-1131.29PREDICTED: THO complex subunit 7A-like [Gossypium ... [more]
gi|1029125016|ref|XP_016740908.1|1.734e-1131.29PREDICTED: THO complex subunit 7A-like [Gossypium ... [more]
gi|823140358|ref|XP_012470027.1|1.787e-1131.29PREDICTED: THO complex subunit 7A-like [Gossypium ... [more]
gi|720092404|ref|XP_010245729.1|5.827e-1131.54PREDICTED: THO complex subunit 7B-like [Nelumbo nu... [more]
gi|1204900965|ref|XP_021282615.1|7.260e-1130.61THO complex subunit 7A [Herrania umbratica][more]
gi|218197297|gb|EEC79724.1|8.405e-1130.95hypothetical protein OsI_21047 [Oryza sativa Indic... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8569rna8569Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications