EWM22117.1, cds8542 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|585102537|gb|EWM22117.1| (tho complex subunit-like protein [Nannochloropsis gaditana]) HSP 1 Score: 484.952 bits (1247), Expect = 5.608e-173 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query: 1 MIDRKIFEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGDEDEEDEESEMQMD 245
MIDRKIFEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGDEDEEDEESEMQMD
Sbjct: 1 MIDRKIFEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGDEDEEDEESEMQMD 245
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|831773736|ref|XP_012754000.1| (hypothetical protein SAMD00019534_059480, partial [Acytostelium subglobosum LB1] >gi|735854632|dbj|GAM22773.1| hypothetical protein SAMD00019534_059480, partial [Acytostelium subglobosum LB1]) HSP 1 Score: 72.7886 bits (177), Expect = 7.957e-12 Identity = 57/193 (29.53%), Postives = 91/193 (47.15%), Query Frame = 0
Query: 7 FEDRLTYKETTITGHTAVSRLVARFNAFVNAAVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYD 199
+D K I T + + ++ AFV A + A TP E + AL+ EL+L ++ KA + +E + + T Q RV+AE+V LKERL E+ R +E+Y AL KL+N P+ T KV E+ A+ E+ R + + MR +Q +L+ V++L+ L+ D
Sbjct: 17 MDDDAPLKRRLIAKETPMKKAFKKYLAFV-----ATLENSASTP--------EQCQAAHQALLSELSLFEFQVQKATVLCDVNKKEMDYYSTLYSTRGQDIERVKAELVELKERLAHEKIQRQYKEQYLALYKLINDKPSIPDTEREIAKVKKELEAIMEQGTRTNEKLEMRTKQFQLLLHTVQELEQSLDTD 196
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1050598557|ref|XP_017618163.1| (PREDICTED: THO complex subunit 7A-like [Gossypium arboreum] >gi|728849147|gb|KHG28590.1| THO complex subunit 7 [Gossypium arboreum]) HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-11 Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
A ++EL+ + + K++AV RE+E F D I +Q + V+ +I LK++L + R +EE EA+ KL++ P +++T ++ EIAALE E + + +RK+Q + +L+ V +L+N +E D ++ E+ R + E+
Sbjct: 77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIIEIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|702328474|ref|XP_010053982.1| (PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|702328480|ref|XP_010053983.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|702328484|ref|XP_010053984.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|702328490|ref|XP_010053985.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|1091467536|ref|XP_018727986.1| PREDICTED: THO complex subunit 7A [Eucalyptus grandis] >gi|629113396|gb|KCW78356.1| hypothetical protein EUGRSUZ_D02531 [Eucalyptus grandis] >gi|629113397|gb|KCW78357.1| hypothetical protein EUGRSUZ_D02531 [Eucalyptus grandis]) HSP 1 Score: 72.4034 bits (176), Expect = 1.363e-11 Identity = 48/147 (32.65%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
A ++EL+ + + K++AV ++ RE++ F D I +Q + +A+I LK++L + R +EE EA+ KL+ P +++T T++ EIAALE E + + +RK+Q + +L+ V DL+ LE D + E+ R AE+
Sbjct: 77 AFLQELSTFEIPLLKSKAVVSSNVREKDNFNELKDEINRQILQAQADIEELKKQLEESKIERKHKEECEAIRKLIAMQPPRSETQKIITELEREIAALEAENTASSRMLELRKKQFALLLHVVEDLQTTLEEDQKNLIEEMRIAAEE 223
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1029107086|ref|XP_016710565.1| (PREDICTED: THO complex subunit 7A-like [Gossypium hirsutum]) HSP 1 Score: 72.0182 bits (175), Expect = 1.649e-11 Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
A ++EL+ + + K++AV RE+E F D I +Q + V+ +I LK++L + R +EE EA+ KL++ P +++T ++ EIAALE E + + +RK+Q + +L+ V +L+N +E D ++ E+ R + E+
Sbjct: 77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIREIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1029125016|ref|XP_016740908.1| (PREDICTED: THO complex subunit 7A-like [Gossypium hirsutum]) HSP 1 Score: 72.0182 bits (175), Expect = 1.734e-11 Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
A ++EL+ + + K++AV RE+E F D I +Q + V+ +I LK++L + R +EE EA+ KL++ P +++T ++ EIAALE E + + +RK+Q + +L+ V +L+N +E D ++ E+ R + E+
Sbjct: 77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIREIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|823140358|ref|XP_012470027.1| (PREDICTED: THO complex subunit 7A-like [Gossypium raimondii] >gi|763751069|gb|KJB18457.1| hypothetical protein B456_003G054000 [Gossypium raimondii]) HSP 1 Score: 72.0182 bits (175), Expect = 1.787e-11 Identity = 46/147 (31.29%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
A ++EL+ + + K++AV RE+E F D I +Q + V+ +I LK++L + R +EE EA+ KL++ P +++T ++ EIAALE E + + +RK+Q + +L+ V +L+N +E D ++ E+ R + E+
Sbjct: 77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKDEINRQISLVQTDIEELKKQLEESKIERQHKEECEAIRKLISAQPPRSETQKSIREIEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEDQKSLIEEMRMVTEE 223
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|720092404|ref|XP_010245729.1| (PREDICTED: THO complex subunit 7B-like [Nelumbo nucifera]) HSP 1 Score: 70.4774 bits (171), Expect = 5.827e-11 Identity = 47/149 (31.54%), Postives = 84/149 (56.38%), Query Frame = 0
Query: 65 YDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
Y A ++E+T L + K++AV RE+E F I +Q + +++I LK++L + R +EE EA+ KLV PA+++T T + EIA LE E + + +RK+Q + +L+ V +L+N +E + ++ E++R E+
Sbjct: 75 YKAFLQEMTTFELPLLKSKAVIDANLREKENFNELQGEIQRQILQTQSDIEDLKKQLEESKIERQHKEECEAIRKLVAMQPARSETQKLITDLEKEIALLEAESTAASRTLELRKKQFALLLHVVDELQNNIEEEQKSLAEEQRIAMEE 223
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|1204900965|ref|XP_021282615.1| (THO complex subunit 7A [Herrania umbratica]) HSP 1 Score: 70.0922 bits (170), Expect = 7.260e-11 Identity = 45/147 (30.61%), Postives = 86/147 (58.50%), Query Frame = 0
Query: 67 ALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQ 213
A ++EL+ + + K++AV + RE+E F D I +Q + + +I LK++L + R +EE EA+ KL++ P +++T T++ EIAALE E + + +RK+Q + +L+ V +L+N +E + ++ E+ R + E+
Sbjct: 77 AFLQELSTFEIPLLKSKAVIDSNLREKENFNELKDEINRQILQAQTDIEDLKKQLEESKIERQHKEECEAIRKLISAPPPRSETQKSITELEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEEQKSLIEEMRMVTEE 223
BLAST of EWM22117.1 vs. NCBI_GenBank
Match: gi|218197297|gb|EEC79724.1| (hypothetical protein OsI_21047 [Oryza sativa Indica Group]) HSP 1 Score: 70.0922 bits (170), Expect = 8.405e-11 Identity = 52/168 (30.95%), Postives = 92/168 (54.76%), Query Frame = 0
Query: 65 YDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKERFLAEQAAAVAKCKEEGGEMEGEGD 232
Y A ++E+ L + K++AV RE+E F D I +Q + + +I LK++LV R RL +EE EA+ K+++ P +++T + EIA LE E + + +RK+QLS +L+ V +L+ + E+++R +A++ A A+ ++ EG GD
Sbjct: 75 YKAFLQEINAFVLPLLKSKAVVDANLREKESFTELQDEIQRQILQAQTDIEELKKKLVQSRIERLYKEECEAIRKMISLQPPRSETEKLIAGLEKEIANLEAENTACIRTLELRKKQLSLLLHVVEELQISI-------EDEQRSIADELRAGAEEQQNMSTDEGSGD 235 The following BLAST results are available for this feature:
BLAST of EWM22117.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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