EWM22200.1, cds8475 (CDS) Nannochloropsis gaditana

Overview
NameEWM22200.1
Unique Namecds8475
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:118241..118357 -
Alignment locationKK037249.1:117967..118064 -
Alignment locationKK037249.1:117540..117768 -
Alignment locationKK037249.1:117130..117324 -
Alignment locationKK037249.1:116806..117003 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22200.1
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100621g2.6229.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:118241..118357 -
KK037249.1supercontigKK037249.1:117967..118064 -
KK037249.1supercontigKK037249.1:117540..117768 -
KK037249.1supercontigKK037249.1:117130..117324 -
KK037249.1supercontigKK037249.1:116806..117003 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|585102639|gb|EWM22200.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
Query:    1 MSVLTARQEEEEDGQERLLLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDVRVE 278
            MSVLTARQEEEEDGQERLLLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDVRVE
Sbjct:    1 MSVLTARQEEEEDGQERLLLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDVRVE 278          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|585102638|gb|EWM22199.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 272/276 (98.55%), Postives = 273/276 (98.91%), Query Frame = 0
Query:    3 VLTARQEEEEDGQERLLLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDVRVE 278
            VL   +EEEEDGQERLLLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDVRVE
Sbjct:   44 VLLRLEEEEEDGQERLLLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDVRVE 319          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|553185093|ref|XP_005854200.1| (2 -phosphodiesterase 12-like protein [Nannochloropsis gaditana CCMP526] >gi|422294864|gb|EKU22164.1| 2 -phosphodiesterase 12-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 481.485 bits (1238), Expect = 1.610e-169
Identity = 236/241 (97.93%), Postives = 239/241 (99.17%), Query Frame = 0
Query:   38 MQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDVRVE 278
            ++MATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVD GRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQ PSDHVSILCDVRV+
Sbjct:  106 LEMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDDGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQAPSDHVSILCDVRVQ 346          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|298711454|emb|CBJ32593.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.161 bits (287), Expect = 3.187e-25
Identity = 88/288 (30.56%), Postives = 128/288 (44.44%), Query Frame = 0
Query:   19 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPR-----VEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFS---ACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVL--------------------SVGAMPTREEA---GQDTALPSWQTPSDHVSILCDV 275
            L+V NTHL++HP A HIRLMQ+ TLV  ++  + ++  + G+RP ++L GDLNS P    +RYL G+ IGP+ ++WE++  F WG R  +      G AA  AA        +  +E                      +S A+PR          E  +  +    GS A     +P +   R  F    A G P FTN+   F +TLDY+F+E        P+ A+ +VL                    +    P  EE         LPS   PSDHVS++ D+
Sbjct:  451 LIVANTHLYFHPNAAHIRLMQLVTLVERISRVRKDLLAR-GLRPAVILGGDLNS-PPDGPVRYLMGDLIGPDSDLWENMGTFKWGDRFFDELPTTSGAAATAAAPPPPPPTSRIPDEK---------------------ASTASPRPNNATNNNDNETARASHPSVAGSKAKPSPFLPNVPYLRTPFDLQLASGTPAFTNFTPDFTDTLDYVFIEGAGADSGTPTTAAEAVLAVEGAGGTGGGGEGGGGGAAAAAVAPMPEEGPLRATTPGLPSETFPSDHVSLVVDL 715          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|407425222|gb|EKF39341.1| (hypothetical protein MOQ_000436 [Trypanosoma cruzi marinkellei])

HSP 1 Score: 94.3597 bits (233), Expect = 3.783e-18
Identity = 71/257 (27.63%), Postives = 102/257 (39.69%), Query Frame = 0
Query:   19 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDV 275
            L+VGNTHLFYH  A HIRL+Q+ TL+ ++             +P +VLCGD N TPTT   R +       E   W+   +F WG  +  G   EE E     A           EEG           +     E    + + P              + + + +  G  +P                +TNY   F E +DYIF           S    SVL    +P   E  ++ ALP+ Q PSDH++++ D+
Sbjct:  407 LIVGNTHLFYHANACHIRLLQVYTLLHKLKIFAAS-------QPSVVLCGDFNFTPTTGGYRLVTKGQTEAEHHSWKKGELFYWGCDRMLGLSTEEMEGVEETA-----------EEGASSSVPVTQPDKRQPPFEAFRETISAPL-------------QLRDAYSETGQELP----------------WTNYAMTFREVIDYIFF----------SPTRLSVLRTVPIPPESELSENVALPNKQYPSDHLALIADL 606          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|588320623|emb|CCW60623.1| (unnamed protein product [Phytomonas sp. isolate EM1])

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-16
Identity = 74/276 (26.81%), Postives = 115/276 (41.67%), Query Frame = 0
Query:   14 GQERLLLVGNTHLFYHPMAQHIRLMQMATLVREMT------ARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDG--------DVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDV 275
            GQE  +++G+THLFYH  A HIR++Q   L+  +        ++ E+ +  G R  +VLCGD N T  T   R +    +      WE   +F WG  +  G  +EE  A                    +  A AVD G  +  +          +V   E+  +EK    K S A+          D+   L L   +        +TNY   F E +DY+F  S+          S  VL    +P   E  ++ ALP+ + PSDH++++ D+
Sbjct:  631 GQE--VVLGSTHLFYHANACHIRILQAYMLLHRLYQMATAGIKEAELAEGRGRRRSVVLCGDFNFTHCTGAYRLVTTGQVEATHHSWEKGRLFWWGCDRQLGCSEEELLAL-----------------NPNTPAAAVDAGDRTDAQS------GPEKVAPAEDNSQEKGEASKPSGAAKSPLEVFFKDDLHTPLALIDAYDRTDPAMQWTNYTLTFREVIDYVFFSSD----------SIDVLQTVPIPPEFELSENHALPNAKYPSDHLALIADL 871          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|554938412|gb|ESL08899.1| (hypothetical protein TRSC58_03390 [Trypanosoma rangeli SC58])

HSP 1 Score: 85.8853 bits (211), Expect = 2.849e-15
Identity = 77/261 (29.50%), Postives = 110/261 (42.15%), Query Frame = 0
Query:   19 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGV-RPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEG---EEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDV 275
            LLVGNTHLFYH  A HIRL+Q   L++++        + F   RP ++LCGD N T TT   R L       E   W+   +F WG  +      EE E GE  A++A    E+ K                               TP +EA  E  K    + K + +  G+ +                 ++NY   F E +DYIF    AP  L       SVL    +P   E  ++ ALP+ + PSDH++++ D+
Sbjct:  407 LLVGNTHLFYHANACHIRLLQAYMLLQKL--------NNFAASRPCVLLCGDFNFTHTTGGYRLLTSGQAEAEHHSWKKGELFYWGCDRMLNVGTEETEVGEKVASSAAPATEQVK-----------------------------HQTP-LEAFRETLKAP-LQLKDAYSETGEKM----------------TWSNYTMTFREVIDYIFF---APTRL-------SVLRTVPIPPESELSENVALPNKRYPSDHLALIADL 602          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|1115872847|emb|SCU69012.1| (Endonuclease/Exonuclease/phosphatase family, putative [Trypanosoma equiperdum])

HSP 1 Score: 84.7297 bits (208), Expect = 7.129e-15
Identity = 74/269 (27.51%), Postives = 110/269 (40.89%), Query Frame = 0
Query:   19 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMAS-DGDVIPTLCLTRP-------FFSACGLPD----FTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDV 275
            L+VGNTHLFYH  A HIRL+Q+  L+ ++ +R          R  +VLCGD N T TT   + +           W    VF WG  +  G    EG A  +A V    + ++G  E     +        +       S  A+    A         S + G  +S   D  P   + R        F  A G+ D    +TNY   F E +DY+F   +             V+    +P   E  ++ ALP+ + PSDHV+++ D+
Sbjct:  409 LVVGNTHLFYHANACHIRLLQVYMLLHKLKSRSDS-------RRGVVLCGDFNFTHTTGGYKLVTTGRTEASHHSWAKGEVFHWGCDRMLGINAAEG-AGGSAEVETGLDVRRGKGESATCASKNNKNDTNNNNESNGNSVDASTSCAA--------TSADTGVASSVKADYRPPFDVFRADMEAPMQFTDAYGVTDPEMPWTNYTMTFREVIDYVFFNPD----------RLLVVQTIPIPPESELSENVALPNRKYPSDHVALIADL 651          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|72387938|ref|XP_844393.1| (hypothetical protein [Trypanosoma brucei brucei TREU927] >gi|62358601|gb|AAX79061.1| hypothetical protein, conserved [Trypanosoma brucei] >gi|70800926|gb|AAZ10834.1| hypothetical protein, conserved [Trypanosoma brucei brucei TREU927])

HSP 1 Score: 84.7297 bits (208), Expect = 7.613e-15
Identity = 74/269 (27.51%), Postives = 110/269 (40.89%), Query Frame = 0
Query:   19 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDGKAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMAS-DGDVIPTLCLTRP-------FFSACGLPD----FTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDV 275
            L+VGNTHLFYH  A HIRL+Q+  L+ ++ +R          R  +VLCGD N T TT   + +           W    VF WG  +  G    EG A  +A V    + ++G  E     +        +       S  A+    A         S + G  +S   D  P   + R        F  A G+ D    +TNY   F E +DY+F   +             V+    +P   E  ++ ALP+ + PSDHV+++ D+
Sbjct:  409 LVVGNTHLFYHANACHIRLLQVYMLLHKLKSRSDS-------RRGVVLCGDFNFTHTTGGYKLVTTGRTEASHHSWAKGEVFHWGCDRMLGINAAEG-AGGSAEVETGLDVRRGKGESATCASKNNKNDTNNNNESNGNSVDASTSCAA--------TSADTGVASSVKADYRPPFDVFRADMEAPMQFTDAYGVTDPEMPWTNYTMTFREVIDYVFFNPD----------RLLVVQTIPIPPESELSENVALPNRKYPSDHVALIADL 651          
BLAST of EWM22200.1 vs. NCBI_GenBank
Match: gi|1177798715|gb|ORC93613.1| (2,5-phosphodiesterase [Trypanosoma theileri])

HSP 1 Score: 83.5741 bits (205), Expect = 1.610e-14
Identity = 78/267 (29.21%), Postives = 109/267 (40.82%), Query Frame = 0
Query:   19 LLVGNTHLFYHPMAQHIRLMQMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEEGGDG------KAVAVDVGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPD----FTNYVQGFVETLDYIFLESEAPVPLDPSGASFSVLSVGAMPTREEAGQDTALPSWQTPSDHVSILCDV 275
            LLVGNTHLFYH  A HIRL+Q+  L+ ++ +   E++        +VLCGD N T  T   R +           W+   +F WG  +  G  +E           EAEEG    +E               +   ++   E +   R  P V  RE                  D+   L LT     A GL D    +TNY   F E +DYIF           S +  SVL    +P   E  Q+ ALP+   PSDH++++ D+
Sbjct:  440 LLVGNTHLFYHANACHIRLLQIYMLLHKLKS-LSELQSL-----PVVLCGDFNFTHITGGYRLVTAGRTEASHPSWDKGELFHWGCDRLLGISEE-----------EAEEGIPTSDENHPALPPITKTTTEKEKETKTEKDEEMQVERQPPFVAFRE------------------DLDAPLQLT----DAYGLTDPNLPWTNYTMTFREVIDYIFF----------SPSRLSVLRTVPIPAESELSQNVALPNKLYPSDHIALIADL 657          
The following BLAST results are available for this feature:
BLAST of EWM22200.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102639|gb|EWM22200.1|0.000e+0100.00Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
gi|585102638|gb|EWM22199.1|0.000e+098.55Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
gi|553185093|ref|XP_005854200.1|1.610e-16997.932 -phosphodiesterase 12-like protein [Nannochlorop... [more]
gi|298711454|emb|CBJ32593.1|3.187e-2530.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|407425222|gb|EKF39341.1|3.783e-1827.63hypothetical protein MOQ_000436 [Trypanosoma cruzi... [more]
gi|588320623|emb|CCW60623.1|4.054e-1626.81unnamed protein product [Phytomonas sp. isolate EM... [more]
gi|554938412|gb|ESL08899.1|2.849e-1529.50hypothetical protein TRSC58_03390 [Trypanosoma ran... [more]
gi|1115872847|emb|SCU69012.1|7.129e-1527.51Endonuclease/Exonuclease/phosphatase family, putat... [more]
gi|72387938|ref|XP_844393.1|7.613e-1527.51hypothetical protein [Trypanosoma brucei brucei TR... [more]
gi|1177798715|gb|ORC93613.1|1.610e-1429.212,5-phosphodiesterase [Trypanosoma theileri][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8502rna8502Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications