EWM22230.1, cds8444 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22230.1
Unique Name	cds8444
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037249.1:43415..43534 -
Alignment location	KK037249.1:43063..43257 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22230.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100724g1.3075.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037249.1	supercontig	KK037249.1:43415..43534 -
KK037249.1	supercontig	KK037249.1:43063..43257 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM22230.1 vs. NCBI_GenBank
Match: gi|585102682|gb|EWM22230.1| (hypothetical protein Naga_100724g1 [Nannochloropsis gaditana])

HSP 1 Score: 208.764 bits (530), Expect = 3.009e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query:    1 MPPVFTVRKGPADLVRKGARSTAEAVALALRWLGGEDVAQAVLRGVQAANVMQLSLMDPATVRHRREREGYVENLYTQGLPAFPSRPPSRPLSRPPSGPFALHS 104
            MPPVFTVRKGPADLVRKGARSTAEAVALALRWLGGEDVAQAVLRGVQAANVMQLSLMDPATVRHRREREGYVENLYTQGLPAFPSRPPSRPLSRPPSGPFALHS
Sbjct:    1 MPPVFTVRKGPADLVRKGARSTAEAVALALRWLGGEDVAQAVLRGVQAANVMQLSLMDPATVRHRREREGYVENLYTQGLPAFPSRPPSRPLSRPPSGPFALHS 104

The following BLAST results are available for this feature:

BLAST of EWM22230.1 vs. NCBI_GenBank

BLAST of EWM22230.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102682\|gb\|EWM22230.1\|	3.009e-68	100.00	hypothetical protein Naga_100724g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8471	rna8471	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications