EWM22233.1, cds8438 (CDS) Nannochloropsis gaditana

Overview
NameEWM22233.1
Unique Namecds8438
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037249.1:16501..16701 -
Alignment locationKK037249.1:16195..16355 -
Alignment locationKK037249.1:16022..16067 -
Alignment locationKK037249.1:15931..15969 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22233.1
Productadenylate kinase
Orig transcript idgnl|cribi|Naga_100254g1.5824.mrna
GeneADK
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037249.1supercontigKK037249.1:16501..16701 -
KK037249.1supercontigKK037249.1:16195..16355 -
KK037249.1supercontigKK037249.1:16022..16067 -
KK037249.1supercontigKK037249.1:15931..15969 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0019205nucleobase-containing compound kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR000850Adenylat/UMP-CMP_kin
IPR027417P-loop_NTPase
Homology
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|585102686|gb|EWM22233.1| (adenylate kinase [Nannochloropsis gaditana])

HSP 1 Score: 298.13 bits (762), Expect = 3.242e-102
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query:    1 MVEHATSSQRAVATCGVVFSLLLLLLQPHKSVSLRSGGDVTSGNSINKFNVRHAGMAWIPGFKPVGKISRRTPSSSPFAPGLSRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAAGSWCRTRSSSAW 148
            MVEHATSSQRAVATCGVVFSLLLLLLQPHKSVSLRSGGDVTSGNSINKFNVRHAGMAWIPGFKPVGKISRRTPSSSPFAPGLSRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAAGSWCRTRSSSAW
Sbjct:    1 MVEHATSSQRAVATCGVVFSLLLLLLQPHKSVSLRSGGDVTSGNSINKFNVRHAGMAWIPGFKPVGKISRRTPSSSPFAPGLSRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAAGSWCRTRSSSAW 148          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|1210512820|dbj|GAX28118.1| (adenylate kinase [Fistulifera solaris])

HSP 1 Score: 81.2629 bits (199), Expect = 1.031e-15
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   57 AWIPGFKPV-GKISRRTPSSSPFAPGL-SRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            A++P  +P+ G  S   P  SPF+  L + L+ L+M+   +   PKIII+GAPASGKGTQCE++KE++GVVHLSTGD+LRAA
Sbjct:   20 AFLP-LRPMWGSTSSSFPDDSPFSLHLRATLTQLQMS---KEDPPKIIISGAPASGKGTQCEIIKEKFGVVHLSTGDMLRAA 97          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|298708417|emb|CBJ48480.1| (adenylate kinase [Ectocarpus siliculosus])

HSP 1 Score: 80.4925 bits (197), Expect = 5.451e-15
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0
Query:   83 SRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            +R SG+ M  AA + +PKIIIAGAPASGKGTQC ++KERYGVVHLSTGD+LRAA
Sbjct:  104 ARRSGMAMEAAAGS-SPKIIIAGAPASGKGTQCSMIKERYGVVHLSTGDMLRAA 156          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|1210515185|dbj|GAX25897.1| (adenylate kinase [Fistulifera solaris])

HSP 1 Score: 78.5666 bits (192), Expect = 1.084e-14
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   57 AWIPGFKPV-GKISRRTPSSSPFAPGL-SRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            A++P  +P+ G  S   P SS F+  L + L+ L+M+   +   PKIII+GAPASGKGTQCE++KE++GVVHLSTGD+LRAA
Sbjct:   20 AFLP-LRPMWGSTSSPHPDSSSFSLHLRAALTQLQMS---KEDPPKIIISGAPASGKGTQCEIIKEKFGVVHLSTGDMLRAA 97          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|224009265|ref|XP_002293591.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970991|gb|EED89327.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.0258 bits (188), Expect = 4.307e-14
Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 0
Query:   99 PKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            PK+IIAGAPASGKGTQCEL+KE+YGVVHLSTGD+LRAA
Sbjct:   78 PKLIIAGAPASGKGTQCELIKEKYGVVHLSTGDMLRAA 115          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|397614293|gb|EJK62708.1| (hypothetical protein THAOC_16668 [Thalassiosira oceanica])

HSP 1 Score: 74.7146 bits (182), Expect = 5.632e-13
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 0
Query:   56 MAWIPG--FKPVGKISRRTPSSSPFAPGLSRLSGLRMTVAARAV------------------TPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            +A++PG  F+   K+S   P     + G    S  R  +A+R                     PK+IIAGAPASGKGTQCE++K++YGVVHLSTGD+LRAA
Sbjct:  110 LAFVPGGRFQSEKKVSPAAPQGRSLSLGTLHASKSRDKIASRTKWAEERGYGSSDESTSSGGGPKLIIAGAPASGKGTQCEIIKDKYGVVHLSTGDMLRAA 210          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|219118280|ref|XP_002179918.1| (kinase adenylate kinase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408971|gb|EEC48904.1| kinase adenylate kinase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.4034 bits (176), Expect = 2.890e-12
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   50 NVRHAGMAWIPGFKPVGKISRRTPS----SSPFAPGLSRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            N     +  + G K + +++R++ S      P  P  S  +G    VA   V  KIIIAGAPASGKGTQCE +KE++GVVHLSTGD+LRAA
Sbjct:   56 NFEGIDLVKLLGKKQLKRMARKSQSHRRSDKPAGPKASIGAGF---VAKDPV--KIIIAGAPASGKGTQCETIKEKFGVVHLSTGDMLRAA 141          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|1072229291|gb|OEU14026.1| (putative nucleoside-phosphate kinase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 70.8626 bits (172), Expect = 4.165e-12
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0
Query:   97 VTP-KIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAAGS 138
            +TP  IIIAGAPASGKGTQCE++KE +GVVHLSTGD+LRAA S
Sbjct:    1 MTPVNIIIAGAPASGKGTQCEIIKEEFGVVHLSTGDMLRAAVS 43          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|873232678|emb|CEM04659.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.4774 bits (171), Expect = 8.110e-12
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 0
Query:   71 RTPSSSPFAPGLSRLSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            R+P S P  P   R     +        P+IIIAGAP  GKGTQC+ +K++YGV+HLSTGDILRAA
Sbjct:   28 RSPPSRPRLPASRRRPSPSLRGQPSMRGPQIIIAGAPGVGKGTQCDFIKQQYGVIHLSTGDILRAA 93          
BLAST of EWM22233.1 vs. NCBI_GenBank
Match: gi|698779563|ref|XP_009822825.1| (hypothetical protein H257_01360 [Aphanomyces astaci] >gi|574122486|gb|ETV87962.1| hypothetical protein H257_01360 [Aphanomyces astaci])

HSP 1 Score: 71.633 bits (174), Expect = 1.039e-11
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0
Query:   93 AARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            AAR   PK+II G PA GKGTQCELL ++YGVVHLSTGDILRAA
Sbjct:  734 AARNGPPKLIICGPPAGGKGTQCELLVQQYGVVHLSTGDILRAA 777          

HSP 2 Score: 66.2402 bits (160), Expect = 6.976e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0
Query:   99 PKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            P I+I G PA GKGTQCELL ++YGVVHLSTGDILRAA
Sbjct:  504 PTIVICGPPAGGKGTQCELLVKQYGVVHLSTGDILRAA 541          

HSP 3 Score: 64.6994 bits (156), Expect = 2.397e-9
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0
Query:   85 LSGLRMTVAARAVTPKIIIAGAPASGKGTQCELLKERYGVVHLSTGDILRAA 136
            + G   +V    + PK+II G PA GKGTQCE L ++YGVVHLSTGDILR A
Sbjct:  941 MEGGGASVKHEVMPPKLIICGPPAGGKGTQCEQLVKKYGVVHLSTGDILRDA 992          
The following BLAST results are available for this feature:
BLAST of EWM22233.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102686|gb|EWM22233.1|3.242e-102100.00adenylate kinase [Nannochloropsis gaditana][more]
gi|1210512820|dbj|GAX28118.1|1.031e-1554.88adenylate kinase [Fistulifera solaris][more]
gi|298708417|emb|CBJ48480.1|5.451e-1574.07adenylate kinase [Ectocarpus siliculosus][more]
gi|1210515185|dbj|GAX25897.1|1.084e-1454.88adenylate kinase [Fistulifera solaris][more]
gi|224009265|ref|XP_002293591.1|4.307e-1489.47predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397614293|gb|EJK62708.1|5.632e-1343.56hypothetical protein THAOC_16668 [Thalassiosira oc... [more]
gi|219118280|ref|XP_002179918.1|2.890e-1248.35kinase adenylate kinase [Phaeodactylum tricornutum... [more]
gi|1072229291|gb|OEU14026.1|4.165e-1279.07putative nucleoside-phosphate kinase [Fragilariops... [more]
gi|873232678|emb|CEM04659.1|8.110e-1253.03unnamed protein product [Vitrella brassicaformis C... [more]
gi|698779563|ref|XP_009822825.1|1.039e-1177.27hypothetical protein H257_01360 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8465rna8465Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications