EWM29846.1, cds843 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|585112427|gb|EWM29846.1| (ubiquitin-conjugating enzyme [Nannochloropsis gaditana]) HSP 1 Score: 324.709 bits (831), Expect = 1.395e-112 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query: 1 MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGSATRRG 155
MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGSATRRG
Sbjct: 1 MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGSATRRG 155
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|298711164|emb|CBJ32389.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 203.756 bits (517), Expect = 1.291e-64 Identity = 92/151 (60.93%), Postives = 119/151 (78.81%), Query Frame = 0
Query: 1 MGSLKRLRKELQAIEKTS-DTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGS 150
+ S KRLRKE+ ++ + D D+ + ED+IR W A I+GP +TPF GG +EL+I VG YP+ PP +RFVT +FHPN+HF TGEICL+ILKK+WSPAWSLQ ACRA++ALLA P+A+SPLNCDAGNM+RAGD+RA+ ++ARLY E S
Sbjct: 3 LTSAKRLRKEMHKLQTSPPDEDIRMSADEDDIRQWRAYIRGPPDTPFAGGIYELKITVGQQYPMVPPCMRFVTKVFHPNVHFNTGEICLNILKKDWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSVARLYNEELAS 153
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|1072237655|gb|OEU22382.1| (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 203.371 bits (516), Expect = 2.203e-64 Identity = 90/149 (60.40%), Postives = 117/149 (78.52%), Query Frame = 0
Query: 1 MGSLKRLRKELQAIE--KTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVE 147
+ + KRLRKELQ +E K D D+ L P DNI W A+++GP +TP+ G F+L I+ G+DYP+ PP I+F+T IFHPN+HF TG++CLDILKKEWSPAW +Q ACRA++ALL+ PDA+SPLNCDAGNM+R GD+ AYN AR+Y+VE
Sbjct: 5 LAAAKRLRKELQNLERAKEQDPDIFLIPDGDNILRWTALLKGPCDTPYAEGVFQLAIDCGSDYPLSPPKIKFLTKIFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMYSVE 153
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|325187962|emb|CCA22506.1| (ubiquitinconjugating enzyme E2 putative [Albugo laibachii Nc14]) HSP 1 Score: 201.83 bits (512), Expect = 7.777e-64 Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query: 3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
++KRLRKELQ + + ++DM L+PQED I W A I+GP +TPFE FEL I+ + YP+ PP ++F+T IFHPN+HF+ G ICLDILKKEWSPAW+L+ AC AV +LL+ P A+SPLNCDAGNM+RA D+ AYN+MA +Y EYG
Sbjct: 4 NVKRLRKELQELRRNPESDMVLYPQEDTIINWKAFIKGPQDTPFEDAVFELAIQTTSLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKKEWSPAWTLRAACLAVTSLLSDPAADSPLNCDAGNMIRADDMMAYNSMAGMYAKEYG 150
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|301111692|ref|XP_002904925.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|262095255|gb|EEY53307.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4]) HSP 1 Score: 201.445 bits (511), Expect = 1.023e-63 Identity = 89/147 (60.54%), Postives = 114/147 (77.55%), Query Frame = 0
Query: 3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
++KRLRKELQ ++K + DM L+P+ED I W A I+GP +TPFE FEL I+ YP+ PP ++FVT IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y EYG
Sbjct: 4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFVTKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 150
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|953499833|emb|CEG38474.1| (ubiquitin-conjugating enzyme [Plasmopara halstedii]) HSP 1 Score: 201.06 bits (510), Expect = 1.232e-63 Identity = 87/147 (59.18%), Postives = 115/147 (78.23%), Query Frame = 0
Query: 3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
++KRLRKELQ ++K + DM L+P+ED I W A I+GP +TPFE FEL I+ YP+ PP ++F+T +FHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN+MA +Y EYG
Sbjct: 4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFENRCFELAIQTTPLYPMEPPKMKFITKVFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNSMAEMYKQEYG 150
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|695394701|ref|XP_009520964.1| (hypothetical protein PHYSODRAFT_540360 [Phytophthora sojae] >gi|348685861|gb|EGZ25676.1| hypothetical protein PHYSODRAFT_540360 [Phytophthora sojae] >gi|1214705088|gb|OWZ16841.1| Ubiquitin-conjugating enzyme E2 [Phytophthora megakarya]) HSP 1 Score: 200.675 bits (509), Expect = 1.787e-63 Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query: 3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
++KRLRKELQ ++K + DM L+P+ED I W A I+GP +TPFE FEL I+ YP+ PP ++F+T IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y EYG
Sbjct: 4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 150
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|675207015|ref|XP_008912392.1| (hypothetical protein PPTG_16576 [Phytophthora parasitica INRA-310] >gi|566013904|gb|ETI36815.1| hypothetical protein F443_17078 [Phytophthora parasitica P1569] >gi|567980041|gb|ETL30511.1| hypothetical protein L916_16507 [Phytophthora parasitica] >gi|568009557|gb|ETL83759.1| hypothetical protein L917_16332 [Phytophthora parasitica] >gi|568039462|gb|ETM36956.1| hypothetical protein L914_16436 [Phytophthora parasitica] >gi|568087484|gb|ETN02355.1| hypothetical protein PPTG_16576 [Phytophthora parasitica INRA-310] >gi|570971676|gb|ETP34795.1| hypothetical protein F442_16936 [Phytophthora parasitica P10297]) HSP 1 Score: 200.29 bits (508), Expect = 3.056e-63 Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query: 3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
++KRLRKELQ ++K + DM L+P+ED I W A I+GP +TPFE FEL I+ YP+ PP ++F+T IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y EYG
Sbjct: 4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAYIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 150
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|567951378|gb|ETK77079.1| (hypothetical protein L915_16604 [Phytophthora parasitica] >gi|570317612|gb|ETO65560.1| hypothetical protein F444_17108 [Phytophthora parasitica P1976] >gi|570941411|gb|ETP06668.1| hypothetical protein F441_16938 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 200.29 bits (508), Expect = 3.114e-63 Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query: 3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
++KRLRKELQ ++K + DM L+P+ED I W A I+GP +TPFE FEL I+ YP+ PP ++F+T IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y EYG
Sbjct: 13 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAYIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 159
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|813206196|ref|XP_012210116.1| (hypothetical protein SPRG_14794 [Saprolegnia parasitica CBS 223.65] >gi|641524625|gb|KDO19183.1| hypothetical protein SPRG_14794 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 199.519 bits (506), Expect = 5.001e-63 Identity = 89/147 (60.54%), Postives = 113/147 (76.87%), Query Frame = 0
Query: 3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
++KRLRKEL + K + DM L+P E++I W A I+GP +TPFEG FEL I YP+ PP ++FVT IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV +LL+ P A+SPLNCDAGNM+RAGD+ AYNAMA +YT E+G
Sbjct: 4 NVKRLRKELAELRKHPEADMVLFPLEESIVEWKAFIKGPADTPFEGRVFELAIATTPMYPMEPPKMKFVTKIFHPNVHFQDGSICLDILKREWSPAWTLRAACLAVTSLLSDPAADSPLNCDAGNMIRAGDLMAYNAMAAMYTTEFG 150 The following BLAST results are available for this feature:
BLAST of EWM29846.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|