EWM29846.1, cds843 (CDS) Nannochloropsis gaditana

Overview
NameEWM29846.1
Unique Namecds843
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:552831..552857 -
Alignment locationCM002456.1:552300..552740 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29846.1
Productubiquitin-conjugating enzyme
Orig transcript idgnl|cribi|Naga_100017g34.344.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:552831..552857 -
CM002456.1supercontigCM002456.1:552300..552740 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|585112427|gb|EWM29846.1| (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 324.709 bits (831), Expect = 1.395e-112
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query:    1 MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGSATRRG 155
            MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGSATRRG
Sbjct:    1 MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGSATRRG 155          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|298711164|emb|CBJ32389.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 203.756 bits (517), Expect = 1.291e-64
Identity = 92/151 (60.93%), Postives = 119/151 (78.81%), Query Frame = 0
Query:    1 MGSLKRLRKELQAIEKTS-DTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGS 150
            + S KRLRKE+  ++ +  D D+ +   ED+IR W A I+GP +TPF GG +EL+I VG  YP+ PP +RFVT +FHPN+HF TGEICL+ILKK+WSPAWSLQ ACRA++ALLA P+A+SPLNCDAGNM+RAGD+RA+ ++ARLY  E  S
Sbjct:    3 LTSAKRLRKEMHKLQTSPPDEDIRMSADEDDIRQWRAYIRGPPDTPFAGGIYELKITVGQQYPMVPPCMRFVTKVFHPNVHFNTGEICLNILKKDWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSVARLYNEELAS 153          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|1072237655|gb|OEU22382.1| (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 203.371 bits (516), Expect = 2.203e-64
Identity = 90/149 (60.40%), Postives = 117/149 (78.52%), Query Frame = 0
Query:    1 MGSLKRLRKELQAIE--KTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVE 147
            + + KRLRKELQ +E  K  D D+ L P  DNI  W A+++GP +TP+  G F+L I+ G+DYP+ PP I+F+T IFHPN+HF TG++CLDILKKEWSPAW +Q ACRA++ALL+ PDA+SPLNCDAGNM+R GD+ AYN  AR+Y+VE
Sbjct:    5 LAAAKRLRKELQNLERAKEQDPDIFLIPDGDNILRWTALLKGPCDTPYAEGVFQLAIDCGSDYPLSPPKIKFLTKIFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMYSVE 153          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|325187962|emb|CCA22506.1| (ubiquitinconjugating enzyme E2 putative [Albugo laibachii Nc14])

HSP 1 Score: 201.83 bits (512), Expect = 7.777e-64
Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
            ++KRLRKELQ + +  ++DM L+PQED I  W A I+GP +TPFE   FEL I+  + YP+ PP ++F+T IFHPN+HF+ G ICLDILKKEWSPAW+L+ AC AV +LL+ P A+SPLNCDAGNM+RA D+ AYN+MA +Y  EYG
Sbjct:    4 NVKRLRKELQELRRNPESDMVLYPQEDTIINWKAFIKGPQDTPFEDAVFELAIQTTSLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKKEWSPAWTLRAACLAVTSLLSDPAADSPLNCDAGNMIRADDMMAYNSMAGMYAKEYG 150          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|301111692|ref|XP_002904925.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|262095255|gb|EEY53307.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 201.445 bits (511), Expect = 1.023e-63
Identity = 89/147 (60.54%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
            ++KRLRKELQ ++K  + DM L+P+ED I  W A I+GP +TPFE   FEL I+    YP+ PP ++FVT IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y  EYG
Sbjct:    4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFVTKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 150          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|953499833|emb|CEG38474.1| (ubiquitin-conjugating enzyme [Plasmopara halstedii])

HSP 1 Score: 201.06 bits (510), Expect = 1.232e-63
Identity = 87/147 (59.18%), Postives = 115/147 (78.23%), Query Frame = 0
Query:    3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
            ++KRLRKELQ ++K  + DM L+P+ED I  W A I+GP +TPFE   FEL I+    YP+ PP ++F+T +FHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN+MA +Y  EYG
Sbjct:    4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFENRCFELAIQTTPLYPMEPPKMKFITKVFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNSMAEMYKQEYG 150          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|695394701|ref|XP_009520964.1| (hypothetical protein PHYSODRAFT_540360 [Phytophthora sojae] >gi|348685861|gb|EGZ25676.1| hypothetical protein PHYSODRAFT_540360 [Phytophthora sojae] >gi|1214705088|gb|OWZ16841.1| Ubiquitin-conjugating enzyme E2 [Phytophthora megakarya])

HSP 1 Score: 200.675 bits (509), Expect = 1.787e-63
Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
            ++KRLRKELQ ++K  + DM L+P+ED I  W A I+GP +TPFE   FEL I+    YP+ PP ++F+T IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y  EYG
Sbjct:    4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 150          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|675207015|ref|XP_008912392.1| (hypothetical protein PPTG_16576 [Phytophthora parasitica INRA-310] >gi|566013904|gb|ETI36815.1| hypothetical protein F443_17078 [Phytophthora parasitica P1569] >gi|567980041|gb|ETL30511.1| hypothetical protein L916_16507 [Phytophthora parasitica] >gi|568009557|gb|ETL83759.1| hypothetical protein L917_16332 [Phytophthora parasitica] >gi|568039462|gb|ETM36956.1| hypothetical protein L914_16436 [Phytophthora parasitica] >gi|568087484|gb|ETN02355.1| hypothetical protein PPTG_16576 [Phytophthora parasitica INRA-310] >gi|570971676|gb|ETP34795.1| hypothetical protein F442_16936 [Phytophthora parasitica P10297])

HSP 1 Score: 200.29 bits (508), Expect = 3.056e-63
Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
            ++KRLRKELQ ++K  + DM L+P+ED I  W A I+GP +TPFE   FEL I+    YP+ PP ++F+T IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y  EYG
Sbjct:    4 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAYIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 150          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|567951378|gb|ETK77079.1| (hypothetical protein L915_16604 [Phytophthora parasitica] >gi|570317612|gb|ETO65560.1| hypothetical protein F444_17108 [Phytophthora parasitica P1976] >gi|570941411|gb|ETP06668.1| hypothetical protein F441_16938 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 200.29 bits (508), Expect = 3.114e-63
Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
            ++KRLRKELQ ++K  + DM L+P+ED I  W A I+GP +TPFE   FEL I+    YP+ PP ++F+T IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV++LL+ P A+SPLNCDAGNM+RAGD+ AYN MA +Y  EYG
Sbjct:   13 NVKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAYIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYG 159          
BLAST of EWM29846.1 vs. NCBI_GenBank
Match: gi|813206196|ref|XP_012210116.1| (hypothetical protein SPRG_14794 [Saprolegnia parasitica CBS 223.65] >gi|641524625|gb|KDO19183.1| hypothetical protein SPRG_14794 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 199.519 bits (506), Expect = 5.001e-63
Identity = 89/147 (60.54%), Postives = 113/147 (76.87%), Query Frame = 0
Query:    3 SLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYG 149
            ++KRLRKEL  + K  + DM L+P E++I  W A I+GP +TPFEG  FEL I     YP+ PP ++FVT IFHPN+HF+ G ICLDILK+EWSPAW+L+ AC AV +LL+ P A+SPLNCDAGNM+RAGD+ AYNAMA +YT E+G
Sbjct:    4 NVKRLRKELAELRKHPEADMVLFPLEESIVEWKAFIKGPADTPFEGRVFELAIATTPMYPMEPPKMKFVTKIFHPNVHFQDGSICLDILKREWSPAWTLRAACLAVTSLLSDPAADSPLNCDAGNMIRAGDLMAYNAMAAMYTTEFG 150          
The following BLAST results are available for this feature:
BLAST of EWM29846.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112427|gb|EWM29846.1|1.395e-112100.00ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
gi|298711164|emb|CBJ32389.1|1.291e-6460.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072237655|gb|OEU22382.1|2.203e-6460.40ubiquitin-conjugating enzyme [Fragilariopsis cylin... [more]
gi|325187962|emb|CCA22506.1|7.777e-6459.86ubiquitinconjugating enzyme E2 putative [Albugo la... [more]
gi|301111692|ref|XP_002904925.1|1.023e-6360.54ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
gi|953499833|emb|CEG38474.1|1.232e-6359.18ubiquitin-conjugating enzyme [Plasmopara halstedii... [more]
gi|695394701|ref|XP_009520964.1|1.787e-6359.86hypothetical protein PHYSODRAFT_540360 [Phytophtho... [more]
gi|675207015|ref|XP_008912392.1|3.056e-6359.86hypothetical protein PPTG_16576 [Phytophthora para... [more]
gi|567951378|gb|ETK77079.1|3.114e-6359.86hypothetical protein L915_16604 [Phytophthora para... [more]
gi|813206196|ref|XP_012210116.1|5.001e-6360.54hypothetical protein SPRG_14794 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna843rna843Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications