EWM22253.1, cds8420 (CDS) Nannochloropsis gaditana

Overview
NameEWM22253.1
Unique Namecds8420
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:698200..698274 +
Alignment locationKK037248.1:698379..698474 +
Alignment locationKK037248.1:698643..698830 +
Alignment locationKK037248.1:699027..699219 +
Alignment locationKK037248.1:699338..699640 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22253.1
ProductTRAM, LAG1 and CLN8 lipid-sensing domain containing protein
Orig transcript idgnl|cribi|Naga_100195g4.689.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:698200..698274 +
KK037248.1supercontigKK037248.1:698379..698474 +
KK037248.1supercontigKK037248.1:698643..698830 +
KK037248.1supercontigKK037248.1:699027..699219 +
KK037248.1supercontigKK037248.1:699338..699640 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|553183464|ref|XP_005853901.1| (hypothetical protein NGA_0463400 [Nannochloropsis gaditana CCMP526] >gi|422295156|gb|EKU22455.1| hypothetical protein NGA_0463400 [Nannochloropsis gaditana CCMP526] >gi|585102711|gb|EWM22253.1| TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MAGTQAAASCLGPNLGITAQWMAAPISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFMTKYWAAAQTGPLKTGRKASPRKGSAALGGEIGGLIMSPSGAGASELKED 284
            MAGTQAAASCLGPNLGITAQWMAAPISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFMTKYWAAAQTGPLKTGRKASPRKGSAALGGEIGGLIMSPSGAGASELKED
Sbjct:    1 MAGTQAAASCLGPNLGITAQWMAAPISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFMTKYWAAAQTGPLKTGRKASPRKGSAALGGEIGGLIMSPSGAGASELKED 284          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|585107091|gb|EWM25332.1| (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-41
Identity = 78/206 (37.86%), Postives = 123/206 (59.71%), Query Frame = 0
Query:   28 GVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFK 233
            G+ +S   WS++FG+V VLP   G +F ++ R V+I HAF +  L   L  +  P EIGG NT  Q IV+NV+ G+F+YD ++  +       +D M  FHH + L G      + RSGA++   LF+ E++NPFM+  +L RE+G+ D  +A  N+A+FA+  TL   +  P L    L+ P++H + +A A+G++ V+ +WF K
Sbjct:   23 GLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSK 228          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|553187328|ref|XP_005854585.1| (hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526] >gi|422294466|gb|EKU21766.1| hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.754 bits (382), Expect = 6.926e-41
Identity = 86/239 (35.98%), Postives = 137/239 (57.32%), Query Frame = 0
Query:   28 GVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKF---MTKYWAAAQTGPLKTGRKASPRKGSAALG 263
            G+ +S   WS++FG+V VLP   G +F ++ R V+I HAF +  L   L  +  P +IGG NT  Q IV+NV+ G+F+YD ++  +       +D M  FHH + L G      + RSGA++   LF+ E++NPFM+  +L RE+G+ D  +A  N+A+FA+  TL   +  P L    L+ P++H + +A A+G++ V+ +WF K    ++K +  ++ G  K G K   R  S A G
Sbjct:   23 GLILSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCKIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSE-GKDKGGEK--KRVDSKAEG 258          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|553182739|ref|XP_005853778.1| (hypothetical protein NGA_0438500 [Nannochloropsis gaditana CCMP526] >gi|422295289|gb|EKU22588.1| hypothetical protein NGA_0438500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.828 bits (377), Expect = 2.311e-40
Identity = 77/206 (37.38%), Postives = 123/206 (59.71%), Query Frame = 0
Query:   28 GVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFK 233
            G+ +S   WS++FG+V VLP   G +F ++ R V+I HAF +  L   L  +  P +IGG NT  Q IV+NV+ G+F+YD ++  +       +D M  FHH + L G      + RSGA++   LF+ E++NPFM+  +L RE+G+ D  +A  N+A+FA+  TL   +  P L    L+ P++H + +A A+G++ V+ +WF K
Sbjct:   23 GLILSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCKIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSK 228          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|661877918|emb|CDP18268.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 97.4413 bits (241), Expect = 2.079e-20
Identity = 64/201 (31.84%), Postives = 109/201 (54.23%), Query Frame = 0
Query:   36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFK 233
            W++LF + +   IF+ R+F +  RVV+  HA   +TLA  LS     C    +   ++P Q   + ++G + ++DL        +    +   +FHH  C++G WA  +S R G+++  AL++ E++ PF++LR LL+E+G++DT L      +FA+  T    I+ P L  V L    S  L +A A+GL +V+  W +K
Sbjct:   16 WTILFLLTK--GIFQERSFDFSLRVVSSIHAIIAVTLA-SLSIQDWSCPIFPLASKSSPMQIQTLAISGAYLIFDLACCQFSDNI----NLDTIFHHLVCILGIWAGLASERYGSEMVAALWLGEISGPFLHLRDLLKEMGYRDTDLNLAIDILFAIIFTAARMIVGPYLTYVFLFS-DSPLLMKAPALGLQLVSAFWAYK 208          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|703151076|ref|XP_010110024.1| (Transmembrane protein 136 [Morus notabilis] >gi|587938293|gb|EXC25042.1| Transmembrane protein 136 [Morus notabilis])

HSP 1 Score: 95.5153 bits (236), Expect = 5.937e-20
Identity = 73/233 (31.33%), Postives = 119/233 (51.07%), Query Frame = 0
Query:   22 MAAPISGVCVSATI-WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPLK 248
            M   I  V VS  I WS  F +++    F  R+F +  R+V+  HA   +TLA  LS     C    +   ++P Q   + V+  + +YDLI  +       K +     HH   +VG  A  + G+ G+++  AL++ E+++PF++LR LL+E+G++DT L      +FAL  T+   I  P L  V L + ++  + QA A+ L +V+  WF+K   M KY    ++ P K
Sbjct:    1 MEESIRNVVVSGVISWSTAFVLIR--KAFPKRSFEFYNRLVSTIHAVLAVTLA-SLSVEDWSCPVCPLASNSSPKQMKALAVSLSYLIYDLICCLFDK----KVNVDNSVHHLVSIVGIGAGLAYGKCGSEMAAALWITEISSPFLHLRELLKELGYRDTDLNLAADILFALIFTVARMICGPYLTYVTL-KARNPLIIQAMAMSLQLVSAFWFYKIARMVKYKLTKRSMPKK 225          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|308805829|ref|XP_003080226.1| (unnamed protein product [Ostreococcus tauri] >gi|116058686|emb|CAL54393.1| TRAM/LAG1/CLN8 homology domain [Ostreococcus tauri] >gi|1199292410|gb|OUS47498.1| TLC domain-domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 95.1301 bits (235), Expect = 1.360e-19
Identity = 61/206 (29.61%), Postives = 108/206 (52.43%), Query Frame = 0
Query:   36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRP-----LE-IGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFM 235
            W+ L+ + + + + + RT  +  R+V++ HA   M    +    C P     LE +GG NT      + ++ G+F+YDLI      Y +   +   + HH   + G  +   +GRSG ++   LF+ E++NP ++LR LLRE+  KD+ LA  N  IFAL       ++ P L    ++   +  L +A A+G+++V++MW +K +
Sbjct:   36 WTALYVLFRFV-LLRKRTADFNNRLVSLIHALVAM----KYCVACLPTWGALLENVGGKNTSAHLDCITMSLGYFVYDLI------YCVLNNEIENVIHHMFTVGGLASGVVTGRSGPELVGCLFLMEVSNPSLHLRSLLRELDMKDSVLASVNDLIFALLFLFCRLVVGPPLVYKTVVNKDNTYLVKAGALGILIVSLMWAWKII 230          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|720062865|ref|XP_010275559.1| (PREDICTED: transmembrane protein 136 [Nelumbo nucifera] >gi|720062873|ref|XP_010275560.1| PREDICTED: transmembrane protein 136 [Nelumbo nucifera])

HSP 1 Score: 93.2041 bits (230), Expect = 4.190e-19
Identity = 67/229 (29.26%), Postives = 118/229 (51.53%), Query Frame = 0
Query:   26 ISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLA-YRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLH-QAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPLKTG 250
            ++ + VS   W+ LF +V+   IF  R+F +  R+V+  HA + +TLA   +     P+ +   ++  Q   + V+ G+ +YDL+  +   +V    +     HH   +VG  +  +    G+++  AL++ E+++PF+++R LL+E+G++DT L       FAL  T    I  P L CV L     +PL  +A A+GL +V+  WF+K   M KY    ++   K  
Sbjct:    6 VNLILVSIVSWASLFLLVR--KIFPNRSFDFCNRIVSTIHASSAVTLASLSVEDWRDPVPLAPKSSTSQMKALAVSVGYLIYDLVCCLFDNHV----NLDNSIHHLVSIVGLGSGLAHQVCGSEMVAALWITEISSPFLHMRELLKELGYRDTDLNLAADICFALIFTFARMIGGPYLTCVTL--SADYPLLIKAMALGLQLVSTFWFYKIARMVKYKLIKRSASKKVA 226          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|922395481|ref|XP_003589322.2| (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein [Medicago truncatula] >gi|657401173|gb|AES59573.2| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein [Medicago truncatula])

HSP 1 Score: 93.2041 bits (230), Expect = 6.231e-19
Identity = 68/232 (29.31%), Postives = 117/232 (50.43%), Query Frame = 0
Query:   36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHP-LHQAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPLKTGRKASPRKGSAA 261
            W+  F +++   IF  R+F +  R+V+  HA   +TLA  LS     C    +   ++  Q  V+ V+  + +YDL+  +       K++W    HH   +VG  A     + G+++  A++V E+++PF++LR LL+E+G+KDT L  T   +FA   T    ++ P +  V L    ++P L +A  +GL +V+  WF+K   M KY    ++   K G K +    S  
Sbjct:   16 WTTTFLVMR--KIFPKRSFDFSNRIVSTIHAILAVTLA-TLSVQDWKCPICPVASDSSYKQMEVLAVSLSYLIYDLVCCLFD----EKFNWDNTIHHLVSIVGLIAGLCYQKCGSEMVGAVWVTEMSSPFLHLRELLKELGYKDTPLNLTADILFASIFTFARMMIGPCITYVTLTS--NNPFLIKAMGLGLQLVSTFWFYKIVRMMKYKLTKKSSTSKNGIKHTTNIKSKT 238          
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|1137205562|gb|OMO75223.1| (hypothetical protein COLO4_26241 [Corchorus olitorius])

HSP 1 Score: 92.0485 bits (227), Expect = 1.290e-18
Identity = 66/218 (30.28%), Postives = 111/218 (50.92%), Query Frame = 0
Query:   36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHP-LHQAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPL 247
            W+  F +++   IF  R++G+  R+V+  HA   +TLA  LS     C    +   ++  Q   + V   + +YDLI  +    V        + HH   +VG  AC +  + G+++  ALFV+E+++PF++ R LL+EVG++DT L       FA+  +L   +  P +  V      ++P L +A A+GL +V+  WF+K   M KY    +T  L
Sbjct:   16 WTTAFLVIR--KIFSKRSYGFSNRIVSTIHATLAVTLA-SLSVEDWSCPVCPLASKSSVKQKRTLGVTVAYLIYDLICCLFDERV----GLDNMIHHLVSIVGILACLAYQKGGSELVAALFVSEISSPFLHARELLKEVGYRDTDLNLAADIAFAVIFSLARMVGGPYVTFVTF--SANNPMLIKAMAMGLQLVSAFWFYKIVKMVKYKLTRRTNKL 224          
The following BLAST results are available for this feature:
BLAST of EWM22253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553183464|ref|XP_005853901.1|0.000e+0100.00hypothetical protein NGA_0463400 [Nannochloropsis ... [more]
gi|585107091|gb|EWM25332.1|3.702e-4137.86TRAM, LAG1 and CLN8 lipid-sensing domain containin... [more]
gi|553187328|ref|XP_005854585.1|6.926e-4135.98hypothetical protein NGA_0175400 [Nannochloropsis ... [more]
gi|553182739|ref|XP_005853778.1|2.311e-4037.38hypothetical protein NGA_0438500 [Nannochloropsis ... [more]
gi|661877918|emb|CDP18268.1|2.079e-2031.84unnamed protein product [Coffea canephora][more]
gi|703151076|ref|XP_010110024.1|5.937e-2031.33Transmembrane protein 136 [Morus notabilis] >gi|58... [more]
gi|308805829|ref|XP_003080226.1|1.360e-1929.61unnamed protein product [Ostreococcus tauri] >gi|1... [more]
gi|720062865|ref|XP_010275559.1|4.190e-1929.26PREDICTED: transmembrane protein 136 [Nelumbo nuci... [more]
gi|922395481|ref|XP_003589322.2|6.231e-1929.31TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain pro... [more]
gi|1137205562|gb|OMO75223.1|1.290e-1830.28hypothetical protein COLO4_26241 [Corchorus olitor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8447rna8447Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications