EWM22253.1, cds8420 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|553183464|ref|XP_005853901.1| (hypothetical protein NGA_0463400 [Nannochloropsis gaditana CCMP526] >gi|422295156|gb|EKU22455.1| hypothetical protein NGA_0463400 [Nannochloropsis gaditana CCMP526] >gi|585102711|gb|EWM22253.1| TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query: 1 MAGTQAAASCLGPNLGITAQWMAAPISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFMTKYWAAAQTGPLKTGRKASPRKGSAALGGEIGGLIMSPSGAGASELKED 284
MAGTQAAASCLGPNLGITAQWMAAPISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFMTKYWAAAQTGPLKTGRKASPRKGSAALGGEIGGLIMSPSGAGASELKED
Sbjct: 1 MAGTQAAASCLGPNLGITAQWMAAPISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFMTKYWAAAQTGPLKTGRKASPRKGSAALGGEIGGLIMSPSGAGASELKED 284
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|585107091|gb|EWM25332.1| (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 151.754 bits (382), Expect = 3.702e-41 Identity = 78/206 (37.86%), Postives = 123/206 (59.71%), Query Frame = 0
Query: 28 GVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFK 233
G+ +S WS++FG+V VLP G +F ++ R V+I HAF + L L + P EIGG NT Q IV+NV+ G+F+YD ++ + +D M FHH + L G + RSGA++ LF+ E++NPFM+ +L RE+G+ D +A N+A+FA+ TL + P L L+ P++H + +A A+G++ V+ +WF K
Sbjct: 23 GLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSK 228
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|553187328|ref|XP_005854585.1| (hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526] >gi|422294466|gb|EKU21766.1| hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 151.754 bits (382), Expect = 6.926e-41 Identity = 86/239 (35.98%), Postives = 137/239 (57.32%), Query Frame = 0
Query: 28 GVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKF---MTKYWAAAQTGPLKTGRKASPRKGSAALG 263
G+ +S WS++FG+V VLP G +F ++ R V+I HAF + L L + P +IGG NT Q IV+NV+ G+F+YD ++ + +D M FHH + L G + RSGA++ LF+ E++NPFM+ +L RE+G+ D +A N+A+FA+ TL + P L L+ P++H + +A A+G++ V+ +WF K ++K + ++ G K G K R S A G
Sbjct: 23 GLILSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCKIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSE-GKDKGGEK--KRVDSKAEG 258
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|553182739|ref|XP_005853778.1| (hypothetical protein NGA_0438500 [Nannochloropsis gaditana CCMP526] >gi|422295289|gb|EKU22588.1| hypothetical protein NGA_0438500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 149.828 bits (377), Expect = 2.311e-40 Identity = 77/206 (37.38%), Postives = 123/206 (59.71%), Query Frame = 0
Query: 28 GVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFK 233
G+ +S WS++FG+V VLP G +F ++ R V+I HAF + L L + P +IGG NT Q IV+NV+ G+F+YD ++ + +D M FHH + L G + RSGA++ LF+ E++NPFM+ +L RE+G+ D +A N+A+FA+ TL + P L L+ P++H + +A A+G++ V+ +WF K
Sbjct: 23 GLILSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCKIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSK 228
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|661877918|emb|CDP18268.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 97.4413 bits (241), Expect = 2.079e-20 Identity = 64/201 (31.84%), Postives = 109/201 (54.23%), Query Frame = 0
Query: 36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFK 233
W++LF + + IF+ R+F + RVV+ HA +TLA LS C + ++P Q + ++G + ++DL + + +FHH C++G WA +S R G+++ AL++ E++ PF++LR LL+E+G++DT L +FA+ T I+ P L V L S L +A A+GL +V+ W +K
Sbjct: 16 WTILFLLTK--GIFQERSFDFSLRVVSSIHAIIAVTLA-SLSIQDWSCPIFPLASKSSPMQIQTLAISGAYLIFDLACCQFSDNI----NLDTIFHHLVCILGIWAGLASERYGSEMVAALWLGEISGPFLHLRDLLKEMGYRDTDLNLAIDILFAIIFTAARMIVGPYLTYVFLFS-DSPLLMKAPALGLQLVSAFWAYK 208
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|703151076|ref|XP_010110024.1| (Transmembrane protein 136 [Morus notabilis] >gi|587938293|gb|EXC25042.1| Transmembrane protein 136 [Morus notabilis]) HSP 1 Score: 95.5153 bits (236), Expect = 5.937e-20 Identity = 73/233 (31.33%), Postives = 119/233 (51.07%), Query Frame = 0
Query: 22 MAAPISGVCVSATI-WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPLK 248
M I V VS I WS F +++ F R+F + R+V+ HA +TLA LS C + ++P Q + V+ + +YDLI + K + HH +VG A + G+ G+++ AL++ E+++PF++LR LL+E+G++DT L +FAL T+ I P L V L + ++ + QA A+ L +V+ WF+K M KY ++ P K
Sbjct: 1 MEESIRNVVVSGVISWSTAFVLIR--KAFPKRSFEFYNRLVSTIHAVLAVTLA-SLSVEDWSCPVCPLASNSSPKQMKALAVSLSYLIYDLICCLFDK----KVNVDNSVHHLVSIVGIGAGLAYGKCGSEMAAALWITEISSPFLHLRELLKELGYRDTDLNLAADILFALIFTVARMICGPYLTYVTL-KARNPLIIQAMAMSLQLVSAFWFYKIARMVKYKLTKRSMPKK 225
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|308805829|ref|XP_003080226.1| (unnamed protein product [Ostreococcus tauri] >gi|116058686|emb|CAL54393.1| TRAM/LAG1/CLN8 homology domain [Ostreococcus tauri] >gi|1199292410|gb|OUS47498.1| TLC domain-domain-containing protein [Ostreococcus tauri]) HSP 1 Score: 95.1301 bits (235), Expect = 1.360e-19 Identity = 61/206 (29.61%), Postives = 108/206 (52.43%), Query Frame = 0
Query: 36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRP-----LE-IGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKFM 235
W+ L+ + + + + + RT + R+V++ HA M + C P LE +GG NT + ++ G+F+YDLI Y + + + HH + G + +GRSG ++ LF+ E++NP ++LR LLRE+ KD+ LA N IFAL ++ P L ++ + L +A A+G+++V++MW +K +
Sbjct: 36 WTALYVLFRFV-LLRKRTADFNNRLVSLIHALVAM----KYCVACLPTWGALLENVGGKNTSAHLDCITMSLGYFVYDLI------YCVLNNEIENVIHHMFTVGGLASGVVTGRSGPELVGCLFLMEVSNPSLHLRSLLRELDMKDSVLASVNDLIFALLFLFCRLVVGPPLVYKTVVNKDNTYLVKAGALGILIVSLMWAWKII 230
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|720062865|ref|XP_010275559.1| (PREDICTED: transmembrane protein 136 [Nelumbo nucifera] >gi|720062873|ref|XP_010275560.1| PREDICTED: transmembrane protein 136 [Nelumbo nucifera]) HSP 1 Score: 93.2041 bits (230), Expect = 4.190e-19 Identity = 67/229 (29.26%), Postives = 118/229 (51.53%), Query Frame = 0
Query: 26 ISGVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLA-YRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLH-QAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPLKTG 250
++ + VS W+ LF +V+ IF R+F + R+V+ HA + +TLA + P+ + ++ Q + V+ G+ +YDL+ + +V + HH +VG + + G+++ AL++ E+++PF+++R LL+E+G++DT L FAL T I P L CV L +PL +A A+GL +V+ WF+K M KY ++ K
Sbjct: 6 VNLILVSIVSWASLFLLVR--KIFPNRSFDFCNRIVSTIHASSAVTLASLSVEDWRDPVPLAPKSSTSQMKALAVSVGYLIYDLVCCLFDNHV----NLDNSIHHLVSIVGLGSGLAHQVCGSEMVAALWITEISSPFLHMRELLKELGYRDTDLNLAADICFALIFTFARMIGGPYLTCVTL--SADYPLLIKAMALGLQLVSTFWFYKIARMVKYKLIKRSASKKVA 226
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|922395481|ref|XP_003589322.2| (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein [Medicago truncatula] >gi|657401173|gb|AES59573.2| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein [Medicago truncatula]) HSP 1 Score: 93.2041 bits (230), Expect = 6.231e-19 Identity = 68/232 (29.31%), Postives = 117/232 (50.43%), Query Frame = 0
Query: 36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHP-LHQAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPLKTGRKASPRKGSAA 261
W+ F +++ IF R+F + R+V+ HA +TLA LS C + ++ Q V+ V+ + +YDL+ + K++W HH +VG A + G+++ A++V E+++PF++LR LL+E+G+KDT L T +FA T ++ P + V L ++P L +A +GL +V+ WF+K M KY ++ K G K + S
Sbjct: 16 WTTTFLVMR--KIFPKRSFDFSNRIVSTIHAILAVTLA-TLSVQDWKCPICPVASDSSYKQMEVLAVSLSYLIYDLVCCLFD----EKFNWDNTIHHLVSIVGLIAGLCYQKCGSEMVGAVWVTEMSSPFLHLRELLKELGYKDTPLNLTADILFASIFTFARMMIGPCITYVTLTS--NNPFLIKAMGLGLQLVSTFWFYKIVRMMKYKLTKKSSTSKNGIKHTTNIKSKT 238
BLAST of EWM22253.1 vs. NCBI_GenBank
Match: gi|1137205562|gb|OMO75223.1| (hypothetical protein COLO4_26241 [Corchorus olitorius]) HSP 1 Score: 92.0485 bits (227), Expect = 1.290e-18 Identity = 66/218 (30.28%), Postives = 111/218 (50.92%), Query Frame = 0
Query: 36 WSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFM---CRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHP-LHQAAAVGLVVVNMMWFFKF--MTKYWAAAQTGPL 247
W+ F +++ IF R++G+ R+V+ HA +TLA LS C + ++ Q + V + +YDLI + V + HH +VG AC + + G+++ ALFV+E+++PF++ R LL+EVG++DT L FA+ +L + P + V ++P L +A A+GL +V+ WF+K M KY +T L
Sbjct: 16 WTTAFLVIR--KIFSKRSYGFSNRIVSTIHATLAVTLA-SLSVEDWSCPVCPLASKSSVKQKRTLGVTVAYLIYDLICCLFDERV----GLDNMIHHLVSIVGILACLAYQKGGSELVAALFVSEISSPFLHARELLKEVGYRDTDLNLAADIAFAVIFSLARMVGGPYVTFVTF--SANNPMLIKAMAMGLQLVSAFWFYKIVKMVKYKLTRRTNKL 224 The following BLAST results are available for this feature:
BLAST of EWM22253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|