EWM22287.1, cds8384 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|585102761|gb|EWM22287.1| (dna mismatch repair protein [Nannochloropsis gaditana]) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query: 1 MKRVLISFPYNDKICRWATWMTLTKDQGEMDSFAAHVDEDIVVPSLFARDTPRACVEKEEGERPDRMEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
MKRVLISFPYNDKICRWATWMTLTKDQGEMDSFAAHVDEDIVVPSLFARDTPRACVEKEEGERPDRMEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR
Sbjct: 1 MKRVLISFPYNDKICRWATWMTLTKDQGEMDSFAAHVDEDIVVPSLFARDTPRACVEKEEGERPDRMEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|553186846|ref|XP_005854500.1| (DNA mismatch repair protein PMS2 [Nannochloropsis gaditana CCMP526] >gi|422294561|gb|EKU21861.1| DNA mismatch repair protein PMS2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 391.349 bits (1004), Expect = 4.698e-136 Identity = 197/221 (89.14%), Postives = 197/221 (89.14%), Query Frame = 0
Query: 67 MEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
MEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQV EVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENE IGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR
Sbjct: 1 MEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQV-----------------------EVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEDIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 198
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|298710162|emb|CBJ31872.1| (postmeiotic segregation increased 2 [Ectocarpus siliculosus]) HSP 1 Score: 278.1 bits (710), Expect = 1.837e-83 Identity = 132/199 (66.33%), Postives = 160/199 (80.40%), Query Frame = 0
Query: 87 PEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKG 285
P IKAID+ SVARICSGQV+ DLATAVKELVENSLDAGA VEVKLK +GV+ IEVSDNGSGV+P N++ L LKYHTSKL+TF+DL V SFGFRGEALSSLCE+AG+F V+TR +E++G K+ Y R+GK+L + RQ GTTV ++ +FEPLPVRR EF+R + KQ KLLR +QAYAL++ VRIT +NTK G
Sbjct: 4 PSIKAIDKVSVARICSGQVITDLATAVKELVENSLDAGAKHVEVKLKEFGVDLIEVSDNGSGVSPSNYEGLALKYHTSKLATFSDLTGVRSFGFRGEALSSLCELAGSFSVTTRTADESVGVKLAYGRNGKMLGKETAPRQVGTTVSISNMFEPLPVRRGEFRRNIKKQFNKLLRGMQAYALISLGVRITVTNTKAKGG 202
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|168067130|ref|XP_001785478.1| (predicted protein [Physcomitrella patens] >gi|162662920|gb|EDQ49719.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 251.906 bits (642), Expect = 8.366e-75 Identity = 123/198 (62.12%), Postives = 154/198 (77.78%), Query Frame = 0
Query: 88 EIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKG 285
+I+ IDR++V RICSGQVV+DLATAVKELVENSLDAGAT +E++LK +G IEV+DNGSGV+P+N+Q LTLKYHTSK+S F+DL+++ SFGFRGEALSSLC ++ V+TR + EAIGA++ YD SG + SQ AR GTTV VA LF PLPVR EFKR + ++ +LL LQAYAL+A VRI C+N G G
Sbjct: 8 KIQPIDRAAVHRICSGQVVLDLATAVKELVENSLDAGATSIEIRLKEYGSVLIEVADNGSGVSPENYQGLTLKYHTSKISDFSDLQTLTSFGFRGEALSSLCALSDV-SVTTRAKEEAIGARLTYDHSGVLSSQESVARAVGTTVAVANLFSPLPVRFKEFKRNIRREYGRLLSVLQAYALIAKGVRIFCTNQVGKSG 204
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|443684700|gb|ELT88557.1| (hypothetical protein CAPTEDRAFT_17706, partial [Capitella teleta]) HSP 1 Score: 233.032 bits (593), Expect = 1.696e-72 Identity = 114/198 (57.58%), Postives = 148/198 (74.75%), Query Frame = 0
Query: 91 AIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSN--TKGAKGI 286
AI+R V RICSGQVV+ LATAVKELVENS+DAGAT VEVKLK+ GV+S+EV DNGSGV NFQALTLK+HTSK+ F DL V +FGFRGEALSSLC + ++TR ++ A+G ++ +D SGKI Q+P RQ GTTV + +LF LPVR +EFKR + K+ +++L L AY L++ VRI+C++ +KG K +
Sbjct: 14 AINRGDVHRICSGQVVLTLATAVKELVENSIDAGATSVEVKLKDHGVDSVEVVDNGSGVESANFQALTLKHHTSKIRDFGDLIGVETFGFRGEALSSLCALC-RLSINTRHQSSAVGTRLTFDHSGKITDQSPVHRQPGTTVVLEQLFSTLPVRHSEFKRNLKKEFSRMLHVLSAYCLISVGVRISCTHVTSKGKKNV 210
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|545371992|ref|XP_005650507.1| (Nhpms2 complexed with Adp [Coccomyxa subellipsoidea C-169] >gi|384252487|gb|EIE25963.1| Nhpms2 complexed with Adp [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 233.417 bits (594), Expect = 1.449e-71 Identity = 113/194 (58.25%), Postives = 149/194 (76.80%), Query Frame = 0
Query: 89 IKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKG 282
I + ++V RI SGQV++DLATAVKEL+EN+LDAGAT +E+KLK +G E IEV+DNG G++ +N++ALTLKYHTSKL++FADL+ ++SFGFRGEALSSLC +A VSTR E+ G +I YD++G ILS AR +GTTV V LF+PLPVR E +R + ++ AKLL LQAYA+++T VRI C+N G
Sbjct: 5 IAPVPAATVHRIASGQVILDLATAVKELLENALDAGATNIEIKLKEYGSELIEVADNGCGISNENYRALTLKYHTSKLTSFADLQELSSFGFRGEALSSLCAVA-EVTVSTRTEDSTTGTRIAYDKNGSILSTAAVARAKGTTVAVKELFKPLPVRFKELRRHLKREFAKLLTLLQAYAIISTGVRIICTNQVG 197
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|301112887|ref|XP_002998214.1| (mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4] >gi|262112508|gb|EEY70560.1| mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4]) HSP 1 Score: 239.965 bits (611), Expect = 9.969e-71 Identity = 115/199 (57.79%), Postives = 150/199 (75.38%), Query Frame = 0
Query: 89 IKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
+ +DR V RICSGQ V+DLATAVKELVEN+LDAGATQ+EVKLK +G ++ EVSDNG+GVAP+N+ +L K++TSK+S+F D+E+VASFGFRGEALSS+CE+A +F V TR +N+A+G ++YD SG ++ +T AR GTTV V LF+PL VR +FKR + K AKLL+ LQAYA+ NV+I N G R
Sbjct: 7 LHVLDRRDVQRICSGQSVVDLATAVKELVENALDAGATQIEVKLKEFGRDAFEVSDNGAGVAPENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTQNDAVGTLLMYDASGALVKETKKARPTGTTVAVEELFKPLAVRYKDFKRNIKKHYAKLLKVLQAYAVSCANVKICVFNITGKNSSR 205
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|1026776429|gb|OAE35145.1| (hypothetical protein AXG93_4461s1240 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 244.973 bits (624), Expect = 1.503e-70 Identity = 118/201 (58.71%), Postives = 153/201 (76.12%), Query Frame = 0
Query: 85 AAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKG 285
A IK ID++++ RICSGQVV+DLATAVKELVENSLDAG+T +E++LK++G E IEV+DNGSGV+ N+Q LTLKYHTSK+S FADL+S++SFGFRGEALSSLC +A + TR ++EAI ++VYD SG I+SQ AR GTTV V++LF LPVR EF R + ++ +LL LQAYAL+ +++ CSN G G
Sbjct: 2 AGKSIKPIDKAAIHRICSGQVVLDLATAVKELVENSLDAGSTSIEIRLKDYGAELIEVADNGSGVSSDNYQGLTLKYHTSKISEFADLQSLSSFGFRGEALSSLCALADV-SIVTRTKDEAIATRLVYDHSGVIVSQEKLARAIGTTVSVSKLFATLPVRHKEFNRNIRREYGRLLTILQAYALIGRGIKLLCSNQAGRGG 201
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|970655083|gb|KUF93300.1| (hypothetical protein AM588_10004487 [Phytophthora nicotianae]) HSP 1 Score: 234.572 bits (597), Expect = 2.437e-70 Identity = 113/199 (56.78%), Postives = 147/199 (73.87%), Query Frame = 0
Query: 89 IKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
+ +DR V RICSGQ V+DLATAVKELVEN+LDAGATQ+EVKLK +G ++ EV DNG+GV P+N+ +L K++TSK+S+F D+E+VASFGFRGEALSS+CE+A +F V TR +N+A+G + YD SG ++ +T AR GTTV V LF+PL VR +FKR + K AKLL+ LQAYA+ NV+I N G R
Sbjct: 7 LHVLDRRDVQRICSGQSVVDLATAVKELVENALDAGATQIEVKLKEFGRDAFEVGDNGAGVTPENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTKNDAVGMLLEYDASGTLVKETKKARPVGTTVTVEELFKPLAVRYKDFKRNIKKHYAKLLKVLQAYAVSCANVKICVFNITGKNASR 205
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|677414384|gb|KFQ20781.1| (Mismatch repair endonuclease PMS2, partial [Merops nubicus]) HSP 1 Score: 226.483 bits (576), Expect = 3.917e-70 Identity = 113/202 (55.94%), Postives = 150/202 (74.26%), Query Frame = 0
Query: 86 APEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNT--KGAKG 285
A IK IDR SV RICSGQVV++L TAVKELVENSLDAGAT +++KLK++G E IEVSDNG GV +NF+ LTLK++TSK+ F+DL V +FGFRGEALSSLC ++ + T ++ +G ++V+D +GKI +TP RQ+GTTV V +LF LPVR EF+R + K+ AK+++ LQAY +V+ VRI C+N +G KG
Sbjct: 2 ARAIKPIDRKSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDYGAELIEVSDNGGGVEEENFEGLTLKHYTSKIQEFSDLIRVETFGFRGEALSSLCALSDV-TIFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVNVHQLFYTLPVRHKEFQRNIKKEYAKMVQVLQAYCIVSKGVRINCTNQVGQGKKG 202 The following BLAST results are available for this feature:
BLAST of EWM22287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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