EWM22287.1, cds8384 (CDS) Nannochloropsis gaditana

Overview
NameEWM22287.1
Unique Namecds8384
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:609029..609102 -
Alignment locationKK037248.1:608007..608244 -
Alignment locationKK037248.1:607861..607929 -
Alignment locationKK037248.1:607704..607787 -
Alignment locationKK037248.1:607270..607445 -
Alignment locationKK037248.1:606918..607025 -
Alignment locationKK037248.1:606669..606783 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22287.1
Productdna mismatch repair protein
Orig transcript idgnl|cribi|Naga_100224g1.5618.mrna
GenePMS2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:609029..609102 -
KK037248.1supercontigKK037248.1:608007..608244 -
KK037248.1supercontigKK037248.1:607861..607929 -
KK037248.1supercontigKK037248.1:607704..607787 -
KK037248.1supercontigKK037248.1:607270..607445 -
KK037248.1supercontigKK037248.1:606918..607025 -
KK037248.1supercontigKK037248.1:606669..606783 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006298mismatch repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0032300mismatch repair complex
Vocabulary: INTERPRO
TermDefinition
IPR014762DNA_mismatch_repair_CS
IPR028831Pms1/Pms2/PMS2L
IPR003594HATPase_C
Homology
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|585102761|gb|EWM22287.1| (dna mismatch repair protein [Nannochloropsis gaditana])

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query:    1 MKRVLISFPYNDKICRWATWMTLTKDQGEMDSFAAHVDEDIVVPSLFARDTPRACVEKEEGERPDRMEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
            MKRVLISFPYNDKICRWATWMTLTKDQGEMDSFAAHVDEDIVVPSLFARDTPRACVEKEEGERPDRMEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR
Sbjct:    1 MKRVLISFPYNDKICRWATWMTLTKDQGEMDSFAAHVDEDIVVPSLFARDTPRACVEKEEGERPDRMEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|553186846|ref|XP_005854500.1| (DNA mismatch repair protein PMS2 [Nannochloropsis gaditana CCMP526] >gi|422294561|gb|EKU21861.1| DNA mismatch repair protein PMS2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 391.349 bits (1004), Expect = 4.698e-136
Identity = 197/221 (89.14%), Postives = 197/221 (89.14%), Query Frame = 0
Query:   67 MEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
            MEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQV                       EVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENE IGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR
Sbjct:    1 MEEDEKQEPPTNQHVQQRAAPEIKAIDRSSVARICSGQV-----------------------EVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEDIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 198          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|298710162|emb|CBJ31872.1| (postmeiotic segregation increased 2 [Ectocarpus siliculosus])

HSP 1 Score: 278.1 bits (710), Expect = 1.837e-83
Identity = 132/199 (66.33%), Postives = 160/199 (80.40%), Query Frame = 0
Query:   87 PEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKG 285
            P IKAID+ SVARICSGQV+ DLATAVKELVENSLDAGA  VEVKLK +GV+ IEVSDNGSGV+P N++ L LKYHTSKL+TF+DL  V SFGFRGEALSSLCE+AG+F V+TR  +E++G K+ Y R+GK+L +    RQ GTTV ++ +FEPLPVRR EF+R + KQ  KLLR +QAYAL++  VRIT +NTK   G
Sbjct:    4 PSIKAIDKVSVARICSGQVITDLATAVKELVENSLDAGAKHVEVKLKEFGVDLIEVSDNGSGVSPSNYEGLALKYHTSKLATFSDLTGVRSFGFRGEALSSLCELAGSFSVTTRTADESVGVKLAYGRNGKMLGKETAPRQVGTTVSISNMFEPLPVRRGEFRRNIKKQFNKLLRGMQAYALISLGVRITVTNTKAKGG 202          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|168067130|ref|XP_001785478.1| (predicted protein [Physcomitrella patens] >gi|162662920|gb|EDQ49719.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 251.906 bits (642), Expect = 8.366e-75
Identity = 123/198 (62.12%), Postives = 154/198 (77.78%), Query Frame = 0
Query:   88 EIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKG 285
            +I+ IDR++V RICSGQVV+DLATAVKELVENSLDAGAT +E++LK +G   IEV+DNGSGV+P+N+Q LTLKYHTSK+S F+DL+++ SFGFRGEALSSLC ++    V+TR + EAIGA++ YD SG + SQ   AR  GTTV VA LF PLPVR  EFKR + ++  +LL  LQAYAL+A  VRI C+N  G  G
Sbjct:    8 KIQPIDRAAVHRICSGQVVLDLATAVKELVENSLDAGATSIEIRLKEYGSVLIEVADNGSGVSPENYQGLTLKYHTSKISDFSDLQTLTSFGFRGEALSSLCALSDV-SVTTRAKEEAIGARLTYDHSGVLSSQESVARAVGTTVAVANLFSPLPVRFKEFKRNIRREYGRLLSVLQAYALIAKGVRIFCTNQVGKSG 204          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|443684700|gb|ELT88557.1| (hypothetical protein CAPTEDRAFT_17706, partial [Capitella teleta])

HSP 1 Score: 233.032 bits (593), Expect = 1.696e-72
Identity = 114/198 (57.58%), Postives = 148/198 (74.75%), Query Frame = 0
Query:   91 AIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSN--TKGAKGI 286
            AI+R  V RICSGQVV+ LATAVKELVENS+DAGAT VEVKLK+ GV+S+EV DNGSGV   NFQALTLK+HTSK+  F DL  V +FGFRGEALSSLC +     ++TR ++ A+G ++ +D SGKI  Q+P  RQ GTTV + +LF  LPVR +EFKR + K+ +++L  L AY L++  VRI+C++  +KG K +
Sbjct:   14 AINRGDVHRICSGQVVLTLATAVKELVENSIDAGATSVEVKLKDHGVDSVEVVDNGSGVESANFQALTLKHHTSKIRDFGDLIGVETFGFRGEALSSLCALC-RLSINTRHQSSAVGTRLTFDHSGKITDQSPVHRQPGTTVVLEQLFSTLPVRHSEFKRNLKKEFSRMLHVLSAYCLISVGVRISCTHVTSKGKKNV 210          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|545371992|ref|XP_005650507.1| (Nhpms2 complexed with Adp [Coccomyxa subellipsoidea C-169] >gi|384252487|gb|EIE25963.1| Nhpms2 complexed with Adp [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 233.417 bits (594), Expect = 1.449e-71
Identity = 113/194 (58.25%), Postives = 149/194 (76.80%), Query Frame = 0
Query:   89 IKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKG 282
            I  +  ++V RI SGQV++DLATAVKEL+EN+LDAGAT +E+KLK +G E IEV+DNG G++ +N++ALTLKYHTSKL++FADL+ ++SFGFRGEALSSLC +A    VSTR E+   G +I YD++G ILS    AR +GTTV V  LF+PLPVR  E +R + ++ AKLL  LQAYA+++T VRI C+N  G
Sbjct:    5 IAPVPAATVHRIASGQVILDLATAVKELLENALDAGATNIEIKLKEYGSELIEVADNGCGISNENYRALTLKYHTSKLTSFADLQELSSFGFRGEALSSLCAVA-EVTVSTRTEDSTTGTRIAYDKNGSILSTAAVARAKGTTVAVKELFKPLPVRFKELRRHLKREFAKLLTLLQAYAIISTGVRIICTNQVG 197          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|301112887|ref|XP_002998214.1| (mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4] >gi|262112508|gb|EEY70560.1| mismatch repair endonuclease pms1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 239.965 bits (611), Expect = 9.969e-71
Identity = 115/199 (57.79%), Postives = 150/199 (75.38%), Query Frame = 0
Query:   89 IKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
            +  +DR  V RICSGQ V+DLATAVKELVEN+LDAGATQ+EVKLK +G ++ EVSDNG+GVAP+N+ +L  K++TSK+S+F D+E+VASFGFRGEALSS+CE+A +F V TR +N+A+G  ++YD SG ++ +T  AR  GTTV V  LF+PL VR  +FKR + K  AKLL+ LQAYA+   NV+I   N  G    R
Sbjct:    7 LHVLDRRDVQRICSGQSVVDLATAVKELVENALDAGATQIEVKLKEFGRDAFEVSDNGAGVAPENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTQNDAVGTLLMYDASGALVKETKKARPTGTTVAVEELFKPLAVRYKDFKRNIKKHYAKLLKVLQAYAVSCANVKICVFNITGKNSSR 205          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|1026776429|gb|OAE35145.1| (hypothetical protein AXG93_4461s1240 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 244.973 bits (624), Expect = 1.503e-70
Identity = 118/201 (58.71%), Postives = 153/201 (76.12%), Query Frame = 0
Query:   85 AAPEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKG 285
            A   IK ID++++ RICSGQVV+DLATAVKELVENSLDAG+T +E++LK++G E IEV+DNGSGV+  N+Q LTLKYHTSK+S FADL+S++SFGFRGEALSSLC +A    + TR ++EAI  ++VYD SG I+SQ   AR  GTTV V++LF  LPVR  EF R + ++  +LL  LQAYAL+   +++ CSN  G  G
Sbjct:    2 AGKSIKPIDKAAIHRICSGQVVLDLATAVKELVENSLDAGSTSIEIRLKDYGAELIEVADNGSGVSSDNYQGLTLKYHTSKISEFADLQSLSSFGFRGEALSSLCALADV-SIVTRTKDEAIATRLVYDHSGVIVSQEKLARAIGTTVSVSKLFATLPVRHKEFNRNIRREYGRLLTILQAYALIGRGIKLLCSNQAGRGG 201          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|970655083|gb|KUF93300.1| (hypothetical protein AM588_10004487 [Phytophthora nicotianae])

HSP 1 Score: 234.572 bits (597), Expect = 2.437e-70
Identity = 113/199 (56.78%), Postives = 147/199 (73.87%), Query Frame = 0
Query:   89 IKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNTKGAKGIR 287
            +  +DR  V RICSGQ V+DLATAVKELVEN+LDAGATQ+EVKLK +G ++ EV DNG+GV P+N+ +L  K++TSK+S+F D+E+VASFGFRGEALSS+CE+A +F V TR +N+A+G  + YD SG ++ +T  AR  GTTV V  LF+PL VR  +FKR + K  AKLL+ LQAYA+   NV+I   N  G    R
Sbjct:    7 LHVLDRRDVQRICSGQSVVDLATAVKELVENALDAGATQIEVKLKEFGRDAFEVGDNGAGVTPENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTKNDAVGMLLEYDASGTLVKETKKARPVGTTVTVEELFKPLAVRYKDFKRNIKKHYAKLLKVLQAYAVSCANVKICVFNITGKNASR 205          
BLAST of EWM22287.1 vs. NCBI_GenBank
Match: gi|677414384|gb|KFQ20781.1| (Mismatch repair endonuclease PMS2, partial [Merops nubicus])

HSP 1 Score: 226.483 bits (576), Expect = 3.917e-70
Identity = 113/202 (55.94%), Postives = 150/202 (74.26%), Query Frame = 0
Query:   86 APEIKAIDRSSVARICSGQVVIDLATAVKELVENSLDAGATQVEVKLKNWGVESIEVSDNGSGVAPQNFQALTLKYHTSKLSTFADLESVASFGFRGEALSSLCEIAGAFEVSTRGENEAIGAKIVYDRSGKILSQTPTARQRGTTVCVARLFEPLPVRRAEFKRTVPKQSAKLLRNLQAYALVATNVRITCSNT--KGAKG 285
            A  IK IDR SV RICSGQVV++L TAVKELVENSLDAGAT +++KLK++G E IEVSDNG GV  +NF+ LTLK++TSK+  F+DL  V +FGFRGEALSSLC ++    + T  ++  +G ++V+D +GKI  +TP  RQ+GTTV V +LF  LPVR  EF+R + K+ AK+++ LQAY +V+  VRI C+N   +G KG
Sbjct:    2 ARAIKPIDRKSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDYGAELIEVSDNGGGVEEENFEGLTLKHYTSKIQEFSDLIRVETFGFRGEALSSLCALSDV-TIFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVNVHQLFYTLPVRHKEFQRNIKKEYAKMVQVLQAYCIVSKGVRINCTNQVGQGKKG 202          
The following BLAST results are available for this feature:
BLAST of EWM22287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102761|gb|EWM22287.1|0.000e+0100.00dna mismatch repair protein [Nannochloropsis gadit... [more]
gi|553186846|ref|XP_005854500.1|4.698e-13689.14DNA mismatch repair protein PMS2 [Nannochloropsis ... [more]
gi|298710162|emb|CBJ31872.1|1.837e-8366.33postmeiotic segregation increased 2 [Ectocarpus si... [more]
gi|168067130|ref|XP_001785478.1|8.366e-7562.12predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|443684700|gb|ELT88557.1|1.696e-7257.58hypothetical protein CAPTEDRAFT_17706, partial [Ca... [more]
gi|545371992|ref|XP_005650507.1|1.449e-7158.25Nhpms2 complexed with Adp [Coccomyxa subellipsoide... [more]
gi|301112887|ref|XP_002998214.1|9.969e-7157.79mismatch repair endonuclease pms1, putative [Phyto... [more]
gi|1026776429|gb|OAE35145.1|1.503e-7058.71hypothetical protein AXG93_4461s1240 [Marchantia p... [more]
gi|970655083|gb|KUF93300.1|2.437e-7056.78hypothetical protein AM588_10004487 [Phytophthora ... [more]
gi|677414384|gb|KFQ20781.1|3.917e-7055.94Mismatch repair endonuclease PMS2, partial [Merops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8411rna8411Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications