EWM22302.1, cds8369 (CDS) Nannochloropsis gaditana

Overview
NameEWM22302.1
Unique Namecds8369
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:569805..569961 -
Alignment locationKK037248.1:569326..569459 -
Alignment locationKK037248.1:568943..569110 -
Alignment locationKK037248.1:568478..568572 -

Link to JBrowse

Properties
Property NameValue
Start range568478
Start range.
Protein idEWM22302.1
Productcoatomer subunit gamma
Partialtrue
Orig transcript idgnl|cribi|Naga_100785g1.3341.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:569805..569961 -
KK037248.1supercontigKK037248.1:569326..569459 -
KK037248.1supercontigKK037248.1:568943..569110 -
KK037248.1supercontigKK037248.1:568478..568572 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0030117membrane coat
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR017106Coatomer_gsu
IPR002553Clathrin/coatomer_adapt-like_N
IPR011989ARM-like
Homology
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|585102789|gb|EWM22302.1| (coatomer subunit gamma, partial [Nannochloropsis gaditana])

HSP 1 Score: 383.259 bits (983), Expect = 8.240e-135
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MPDHSSSSLMLGPGMAPPRLEGSATDGSLTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            MPDHSSSSLMLGPGMAPPRLEGSATDGSLTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER
Sbjct:    1 MPDHSSSSLMLGPGMAPPRLEGSATDGSLTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|676396487|ref|XP_009041521.1| (hypothetical protein AURANDRAFT_39222 [Aureococcus anophagefferens] >gi|323447884|gb|EGB03791.1| hypothetical protein AURANDRAFT_39222 [Aureococcus anophagefferens])

HSP 1 Score: 238.424 bits (607), Expect = 2.965e-70
Identity = 113/164 (68.90%), Postives = 139/164 (84.76%), Query Frame = 0 
Query:   21 EGSATDGSLTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +G      L++S+++KEIQ LKDKFK +D D  SP+ DLEKA+VLQECRVF DA +VT+ PR C QLITKLLHI++QG+ ++S E T VFFGVTKLFQS +++LRRM+Y FIKE+AE CNPDDVIIVTSSLTKDMNS EDL+RAN+IRVL+K+ID+TMLGAIER
Sbjct:    3 DGLEETSGLSLSSMVKEIQGLKDKFKREDADCPSPFADLEKATVLQECRVFSDAKVVTESPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSTDASLRRMVYFFIKEVAETCNPDDVIIVTSSLTKDMNSNEDLFRANSIRVLAKMIDATMLGAIER 166
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|676385467|ref|XP_009036012.1| (hypothetical protein AURANDRAFT_37193 [Aureococcus anophagefferens] >gi|323453003|gb|EGB08875.1| hypothetical protein AURANDRAFT_37193 [Aureococcus anophagefferens])

HSP 1 Score: 229.565 bits (584), Expect = 7.375e-67
Identity = 113/176 (64.20%), Postives = 138/176 (78.41%), Query Frame = 0 
Query:   27 GSLTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKI------------------IDSTMLGAIER 184
            G LT+S+++KEIQ LKDKFK +D D  SP+ DLEKA+VLQECRVF D+ +VT  PR C QLITKLLHI++QG+ ++S E T VFFGVTKLFQS +++LRRM+Y FIKE+AE CNPDDVIIVTSSLTKDMNS+EDL+RAN+IRVL+K+                  ID+TMLGAIER
Sbjct:   12 GGLTLSSMVKEIQGLKDKFKREDADSPSPFADLEKATVLQECRVFSDSKVVTDSPRKCSQLITKLLHIVTQGDAMSSSEVTEVFFGVTKLFQSSDASLRRMVYFFIKEVAETCNPDDVIIVTSSLTKDMNSKEDLFRANSIRVLAKMCVIEILLRCFDFIKVCTRIDATMLGAIER 187
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|567963412|gb|ETK88911.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|568021393|gb|ETL95483.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568051783|gb|ETM48682.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570988264|gb|ETP46731.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 224.172 bits (570), Expect = 4.786e-65
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 0 
Query:   29 LTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +T+S+VM +I   K+KFKND+ED  SP+Q L+KA+VLQE ++F DAN VT+ P+ CCQLITKLLHIL+QGE  TS ETT VFFGVTKLFQS ++NLRRMMYLFIKE+AEA   D+VIIVT SLTKDM+S  DLYRANAIRVL +IID +ML AIER
Sbjct:   23 MTISSVMADI---KEKFKNDEEDQVSPFQGLDKATVLQETKIFSDANTVTRHPKKCCQLITKLLHILTQGEPFTSAETTAVFFGVTKLFQSKDANLRRMMYLFIKEVAEATAADEVIIVTQSLTKDMSSDVDLYRANAIRVLCRIIDGSMLNAIER 175
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|570329833|gb|ETO77781.1| (hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 223.787 bits (569), Expect = 5.087e-65
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 0 
Query:   29 LTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +T+S+VM +I   K+KFKND+ED  SP+Q L+KA+VLQE ++F DAN VT+ P+ CCQLITKLLHIL+QGE  TS ETT VFFGVTKLFQS ++NLRRMMYLFIKE+AEA   D+VIIVT SLTKDM+S  DLYRANAIRVL +IID +ML AIER
Sbjct:   23 MTISSVMADI---KEKFKNDEEDQVSPFQGLDKATVLQETKIFSDANTVTRHPKKCCQLITKLLHILTQGEPFTSAETTAVFFGVTKLFQSKDANLRRMMYLFIKEVAEATAADEVIIVTQSLTKDMSSDVDLYRANAIRVLCRIIDGSMLNAIER 175
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|675189513|ref|XP_008903641.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567992110|gb|ETL42309.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568096408|gb|ETN11159.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570953553|gb|ETP18810.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|970628016|gb|KUF75777.1| Coatomer subunit gamma [Phytophthora nicotianae] >gi|970664188|gb|KUG01167.1| Coatomer subunit gamma [Phytophthora nicotianae])

HSP 1 Score: 223.787 bits (569), Expect = 5.298e-65
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 0 
Query:   29 LTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +T+S+VM +I   K+KFKND+ED  SP+Q L+KA+VLQE ++F DAN VT+ P+ CCQLITKLLHIL+QGE  TS ETT VFFGVTKLFQS ++NLRRMMYLFIKE+AEA   D+VIIVT SLTKDM+S  DLYRANAIRVL +IID +ML AIER
Sbjct:   23 MTISSVMADI---KEKFKNDEEDQVSPFQGLDKATVLQETKIFSDANTVTRHPKKCCQLITKLLHILTQGEPFTSAETTAVFFGVTKLFQSKDANLRRMMYLFIKEVAEATAADEVIIVTQSLTKDMSSDVDLYRANAIRVLCRIIDGSMLNAIER 175
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|301117764|ref|XP_002906610.1| (coatomer subunit gamma, putative [Phytophthora infestans T30-4] >gi|262107959|gb|EEY66011.1| coatomer subunit gamma, putative [Phytophthora infestans T30-4])

HSP 1 Score: 223.787 bits (569), Expect = 5.517e-65
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 0 
Query:   29 LTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +T+S+VM +I   K+KFKND+ED  SP+Q L+KA+VLQE ++F DAN VT+ P+ CCQLITKLLHIL+QGE  TS ETT VFFGVTKLFQS ++NLRRMMYLFIKE+AEA   D+VIIVT SLTKDM+S  DLYRANAIRVL +IID +ML AIER
Sbjct:   23 MTISSVMADI---KEKFKNDEEDQVSPFQGLDKATVLQETKIFSDANTVTRHPKKCCQLITKLLHILTQGEPFTSAETTAVFFGVTKLFQSKDANLRRMMYLFIKEVAEATAADEVIIVTQSLTKDMSSDVDLYRANAIRVLCRIIDGSMLNAIER 175
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|566026132|gb|ETI49043.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 223.787 bits (569), Expect = 5.746e-65
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 0 
Query:   29 LTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +T+S+VM +I   K+KFKND+ED  SP+Q L+KA+VLQE ++F DAN VT+ P+ CCQLITKLLHIL+QGE  TS ETT VFFGVTKLFQS ++NLRRMMYLFIKE+AEA   D+VIIVT SLTKDM+S  DLYRANAIRVL +IID +ML AIER
Sbjct:   23 MTISSVMADI---KEKFKNDEEDQVSPFQGLDKATVLQETKIFSDANTVTRHPKKCCQLITKLLHILTQGEPFTSAETTAVFFGVTKLFQSKDANLRRMMYLFIKEVAEATAADEVIIVTQSLTKDMSSDVDLYRANAIRVLCRIIDGSMLNAIER 175
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|695375973|ref|XP_009515671.1| (hypothetical protein PHYSODRAFT_537097 [Phytophthora sojae] >gi|348688582|gb|EGZ28396.1| hypothetical protein PHYSODRAFT_537097 [Phytophthora sojae])

HSP 1 Score: 223.787 bits (569), Expect = 5.985e-65
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 0 
Query:   29 LTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +T+S+VM +I   K+KFKND+ED  SP+Q L+KA+VLQE ++F DAN VT+ P+ CCQLITKLLHIL+QGE  TS ETT VFFGVTKLFQS ++NLRRMMYLFIKE+AEA   D+VIIVT SLTKDM+S  DLYRANAIRVL +IID +ML AIER
Sbjct:   23 MTISSVMADI---KEKFKNDEEDQVSPFQGLDKATVLQETKIFSDANTVTRHPKKCCQLITKLLHILTQGEPFTSAETTAVFFGVTKLFQSKDANLRRMMYLFIKEVAEATAADEVIIVTQSLTKDMSSDVDLYRANAIRVLCRIIDGSMLNAIER 175
[Close]
BLAST of EWM22302.1 vs. NCBI_GenBank
Match: gi|1214709145|gb|OWZ20353.1| (Coatomer subunit gamma [Phytophthora megakarya])

HSP 1 Score: 223.402 bits (568), Expect = 7.408e-65
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 0 
Query:   29 LTVSNVMKEIQVLKDKFKNDDEDHFSPYQDLEKASVLQECRVFHDANIVTQDPRLCCQLITKLLHILSQGEQLTSVETTTVFFGVTKLFQSHNSNLRRMMYLFIKEMAEACNPDDVIIVTSSLTKDMNSREDLYRANAIRVLSKIIDSTMLGAIER 184
            +T+S+VM +I   K+KFKND+ED  SP+Q L+KA+VLQE ++F DAN VT+ P+ CCQLITKLLHIL+QGE  TS ETT VFFGVTKLFQS ++NLRRMMYLFIKE+AEA   D+VIIVT SLTKDM+S  DLYRANAIRVL +IID +ML AIER
Sbjct:   23 MTISSVMADI---KEKFKNDEEDQVSPFQGLDKATVLQETKIFSDANTVTRHPKKCCQLITKLLHILTQGEPFTSAETTAVFFGVTKLFQSKDANLRRMMYLFIKEVAEATAADEVIIVTQSLTKDMSSDVDLYRANAIRVLCRIIDGSMLNAIER 175
The following BLAST results are available for this feature:
BLAST of EWM22302.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102789|gb|EWM22302.1|8.240e-135100.00coatomer subunit gamma, partial [Nannochloropsis g... [more]
gi|676396487|ref|XP_009041521.1|2.965e-7068.90hypothetical protein AURANDRAFT_39222 [Aureococcus... [more]
gi|676385467|ref|XP_009036012.1|7.375e-6764.20hypothetical protein AURANDRAFT_37193 [Aureococcus... [more]
gi|567963412|gb|ETK88911.1|4.786e-6569.87hypothetical protein, variant [Phytophthora parasi... [more]
gi|570329833|gb|ETO77781.1|5.087e-6569.87hypothetical protein, variant [Phytophthora parasi... [more]
gi|675189513|ref|XP_008903641.1|5.298e-6569.87hypothetical protein, variant [Phytophthora parasi... [more]
gi|301117764|ref|XP_002906610.1|5.517e-6569.87coatomer subunit gamma, putative [Phytophthora inf... [more]
gi|566026132|gb|ETI49043.1|5.746e-6569.87hypothetical protein, variant [Phytophthora parasi... [more]
gi|695375973|ref|XP_009515671.1|5.985e-6569.87hypothetical protein PHYSODRAFT_537097 [Phytophtho... [more]
gi|1214709145|gb|OWZ20353.1|7.408e-6569.87Coatomer subunit gamma [Phytophthora megakarya][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8396rna8396Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications