EWM22317.1, cds8357 (CDS) Nannochloropsis gaditana

Overview
NameEWM22317.1
Unique Namecds8357
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:540060..540735 -
Alignment locationKK037248.1:539710..539813 -
Alignment locationKK037248.1:539390..539485 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22317.1
Productbacterioferritin comigratory protein
Orig transcript idgnl|cribi|Naga_100118g22.2744.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:540060..540735 -
KK037248.1supercontigKK037248.1:539710..539813 -
KK037248.1supercontigKK037248.1:539390..539485 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:0016209antioxidant activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR000866AhpC/TSA
Homology
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|585102814|gb|EWM22317.1| (bacterioferritin comigratory protein [Nannochloropsis gaditana])

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MRACAEEGCYMAVPLFDSHALCSPSGQIHYVAPTSMKLSSMFTLPATSLLLTVLVGAPCLSHAYIRPLHMSQSQPQQSMSQPAASSPSTSSATSPTFLAGIDRRNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA 291
            MRACAEEGCYMAVPLFDSHALCSPSGQIHYVAPTSMKLSSMFTLPATSLLLTVLVGAPCLSHAYIRPLHMSQSQPQQSMSQPAASSPSTSSATSPTFLAGIDRRNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA
Sbjct:    1 MRACAEEGCYMAVPLFDSHALCSPSGQIHYVAPTSMKLSSMFTLPATSLLLTVLVGAPCLSHAYIRPLHMSQSQPQQSMSQPAASSPSTSSATSPTFLAGIDRRNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA 291          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|219119839|ref|XP_002180671.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408144|gb|EEC48079.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 187.193 bits (474), Expect = 2.588e-55
Identity = 101/191 (52.88%), Postives = 123/191 (64.40%), Query Frame = 0
Query:  101 IDRRNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGK-PLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQ 290
            +DRR  +    L  AA A TG   +T  A      VP  G +AP F LP+S G    SL +L   GK+TVLYF+P  F+  CTLEA+ FQRDI+ Y+ LNAQIVGVSVD  +K   F S  GLDF +LSD G +VS  YGSAL +P  G FSNRQTYII P+G L  VFT+VES++ +HS EVLE L  L+
Sbjct:   23 LDRRAFVRDVALTTAAVA-TG---VTVSAPLPAFAVPVTGAKAPFFELPNSRGSGSTSLKNLINSGKWTVLYFYPGAFSKGCTLEARGFQRDIERYRALNAQIVGVSVDPVEKNAQFCSAEGLDFYMLSDTGGRVSNLYGSALSVPGFGMFSNRQTYIIDPEGNLRWVFTDVESRIARHSVEVLEKLNELE 209          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|223994741|ref|XP_002287054.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978369|gb|EED96695.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 184.496 bits (467), Expect = 5.293e-54
Identity = 103/212 (48.58%), Postives = 131/212 (61.79%), Query Frame = 0
Query:   85 SSPSTSSATSPTFLAGIDRRNLLTKGFLGGAAAAFTGTFT-----LTTGAQKAGADVPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA 291
            S PS S  T P     I+ R    + F+  A +  TGT T     L   +  A +   + G  AP F+LP+S G+ ++L  L+  GK+TVLYFFP  FTS CTLEA+ FQ D+D Y  LN+QIVGVSVD  DK + F  E  LDF +L+D+G  +S+AYGS+L IP  G FSNRQTYII P   +  VF +VES + +HS EVLE LK LQA
Sbjct:   26 SLPSKSPLTQPKI--SINSR----RAFINHATSIATGTITTSALFLPRLSNAASSSPLSLGSPAPSFTLPNSKGQQVTLDSLSSSGKWTVLYFFPGAFTSGCTLEARKFQEDVDKYHALNSQIVGVSVDSVDKNSAFCREEKLDFFMLTDEGGSISKAYGSSLSIPGFGTFSNRQTYIIDPQQNVRWVFVDVESHIPRHSAEVLEKLKELQA 231          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|299470900|emb|CBN79884.1| (Peroxiredoxin family protein [Ectocarpus siliculosus])

HSP 1 Score: 180.644 bits (457), Expect = 1.054e-52
Identity = 89/150 (59.33%), Postives = 109/150 (72.67%), Query Frame = 0
Query:  140 GIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKAL 289
            G  APDF+LPS+ GK +SL DL K  K+TVLYF+P  FTS CT+EA+ FQ+D + Y   NAQIVGVSVD  +K  +F+    L F LLSD GA V++ YGS LDIPF+G+F+NR T+II  DGK+ KVFT+VESKV KHS EVL  L  L
Sbjct:   69 GSMAPDFTLPSNAGKDISLKDLLKQAKHTVLYFYPGDFTSGCTIEAQGFQKDFEKYGANNAQIVGVSVDSIEKHLNFEKSYNLQFPLLSDIGANVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVESKVAKHSAEVLATLATL 218          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|551657164|ref|XP_005831354.1| (peroxiredoxin [Guillardia theta CCMP2712] >gi|428175484|gb|EKX44374.1| peroxiredoxin [Guillardia theta CCMP2712])

HSP 1 Score: 176.407 bits (446), Expect = 1.028e-50
Identity = 98/202 (48.51%), Postives = 129/202 (63.86%), Query Frame = 0
Query:   98 LAGIDRRNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVP---AEGIE-----APDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA 291
            ++G+ RR+           +A  G   +T G    G +VP   AEG+      APDF LPS+ GK + L DL   GK+TVLYF+P  FTS CT+EA  F++   + + L A+IVGVSVD  +K  DF  + GL F LLSD+G KVS+ YGSAL IPF+G FSNRQTYII P G L  VFT+V+S++ KH++EV+  LK L+A
Sbjct:   50 ISGLSRRDFFKD------TSAMAGVSAITIGT--LGFEVPSSFAEGLPSVNAPAPDFLLPSNEGKDIGLKDLK--GKWTVLYFYPGDFTSGCTIEANNFEKASADIRALGAEIVGVSVDSVEKHLDFAKKYGLSFPLLSDQGGKVSQLYGSALQIPFMGSFSNRQTYIIDPSGNLRWVFTDVQSRLNKHADEVIAKLKELKA 241          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|1130427873|ref|WP_075596620.1| (peroxiredoxin [Oscillatoriales cyanobacterium 'hensonii'] >gi|1129074563|gb|OLP20296.1| peroxiredoxin [Oscillatoriales cyanobacterium 'hensonii'])

HSP 1 Score: 144.436 bits (363), Expect = 4.172e-39
Identity = 88/189 (46.56%), Postives = 114/189 (60.32%), Query Frame = 0
Query:  103 RRNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGK-PLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQ 290
            RR+ L   FL  +A  F    + T  A   G  +P  G  AP F+LPSS G   +SLAD    GK+ VLYF+P+ FTS CTLEA+ FQ+D+  Y + N QI+GVS D  D  T+F    GL F LLSD+G KVS+AYGS     +LG  S R +++I P+G L + FT V   +  HS+EVL  L+ALQ
Sbjct:    4 RRDFLR--FLLISALVFFSVISFTAPALALGGKLPEIGQPAPAFTLPSSTGDGSISLADYR--GKWVVLYFYPKDFTSGCTLEARRFQQDLPKYLEKNTQIIGVSADSVDSHTEFCDSEGLKFPLLSDRGGKVSQAYGS-----WLGIVSLRHSFLIDPEGILQERFTGVNPAI--HSQEVLARLEALQ 181          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|1084664181|gb|OGP12280.1| (peroxiredoxin [Deltaproteobacteria bacterium GWA2_47_9])

HSP 1 Score: 142.124 bits (357), Expect = 3.021e-38
Identity = 83/171 (48.54%), Postives = 107/171 (62.57%), Query Frame = 0
Query:  120 TGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQ 290
             G   L++    A A++P  G  APDFSL S+    +SL D    GK+ VLYF+P+ FT  CT+EA  FQRD+  Y+K+NA IVGVSVD  +    F ++ GL F LLSD   K+S AYGS  +     + S R T+II+P G++ KVFT V  KV+KHSEEVL AL  LQ
Sbjct:   12 VGVLGLSSVLAIAFAELPEAGKPAPDFSLKSNENTQVSLKDYR--GKWVVLYFYPKDFTPGCTIEAHNFQRDLAAYEKVNAVIVGVSVDTPELHKSFCAKEGLSFKLLSDIDGKISTAYGSVTEYKG-NKLSARNTFIINPQGRIAKVFTGV--KVEKHSEEVLAALAELQ 177          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|505033303|ref|WP_015220405.1| (peroxiredoxin [Cyanobacterium aponinum] >gi|428685215|gb|AFZ54682.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Cyanobacterium aponinum PCC 10605])

HSP 1 Score: 141.739 bits (356), Expect = 6.533e-38
Identity = 87/187 (46.52%), Postives = 109/187 (58.29%), Query Frame = 0
Query:  104 RNLLTKGFLGGAAAAFTGTFTLTTGAQKAGADVPAEGIEAPDFSLPSSLGK-PLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKAL 289
            RN+L   F+      F  +F     A   G   P+    APDF+LP++LG   +SL D    GK+ VLYF+PQ FT  CTLEAK FQ+D+  Y  LNA+IVGVSVD+ +   +F  E GL F LL+D   KVS+AYGS L     GR S R TYII+P+G LV  F  V   +  HS+EVL  L  L
Sbjct:    7 RNILVFSFI------FIASFNFMPSAMALGGIQPSLNESAPDFTLPTNLGDGEVSLHDYR--GKWVVLYFYPQDFTPGCTLEAKRFQQDLQKYHDLNAEIVGVSVDDVNSHQNFCDEEGLKFPLLADTEGKVSKAYGSWLS----GR-SLRHTYIINPEGILVAKFLGVRPAI--HSQEVLSELNKL 178          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|1175275996|ref|WP_081823791.1| (peroxiredoxin [Acidobacterium ailaaui])

HSP 1 Score: 136.732 bits (343), Expect = 1.999e-36
Identity = 74/156 (47.44%), Postives = 99/156 (63.46%), Query Frame = 0
Query:  136 VPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA 291
            +P  G +APDF+LPS  G+P+SL      GK+ VLYF+P+  TS CT+EA  FQRD + + K NA I+GVSVD  D    F ++ GL+F LLSD   KV   YGS  +     + +NR T++I P GK+VKV+T V+     HSEEVL AL  ++A
Sbjct:    1 MPQVGQQAPDFTLPSQEGRPVSLDSFR--GKWVVLYFYPKDMTSGCTIEAHNFQRDQEKFLKANAVILGVSVDSVDSHKQFCAKDGLNFTLLSDADKKVVAEYGSLGNYAGF-KIANRNTFLIDPQGKIVKVWTKVDP--SHHSEEVLSALNQMEA 151          
BLAST of EWM22317.1 vs. NCBI_GenBank
Match: gi|499455914|ref|WP_011143378.1| (peroxiredoxin [Gloeobacter violaceus] >gi|37522958|ref|NP_926335.1| bacterioferritin comigratory protein [Gloeobacter violaceus PCC 7421] >gi|35213960|dbj|BAC91330.1| bacterioferritin comigratory protein [Gloeobacter violaceus PCC 7421])

HSP 1 Score: 137.502 bits (345), Expect = 2.044e-36
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 0
Query:  128 GAQKAGADVPAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKVSEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKALQA 291
            G Q A    P  G  AP F LP + GK +SL D    GK+ VLYF+P+  TS CT+EA+ FQ+D+  YK+L A+IVGVS D  D  + F  + GL F+L SD G KV++AY S   +  +G  + R TY+I P G++ KVF+NV+     HS EVL  LK +QA
Sbjct:   18 GPQAALLAAPRVGEAAPAFELPVAAGKKISLKDFQ--GKWLVLYFYPKDMTSGCTIEAQRFQKDLAQYKQLGAEIVGVSADALDSHSMFSKKEGLTFLLASDVGGKVAQAYDSWYGLGDMG-MAARNTYLIDPQGRVAKVFSNVDP--TGHSREVLSTLKQIQA 176          
The following BLAST results are available for this feature:
BLAST of EWM22317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM22317.1XP_002180671.1XP_002287054.1CBN79884.1XP_005831354.1WP_075596620.1OGP12280.1WP_015220405.1WP_081823791.1WP_011143378.1
Match NameE-valueIdentityDescription
gi|585102814|gb|EWM22317.1|0.000e+0100.00bacterioferritin comigratory protein [Nannochlorop... [more]
gi|219119839|ref|XP_002180671.1|2.588e-5552.88predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223994741|ref|XP_002287054.1|5.293e-5448.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|299470900|emb|CBN79884.1|1.054e-5259.33Peroxiredoxin family protein [Ectocarpus siliculos... [more]
gi|551657164|ref|XP_005831354.1|1.028e-5048.51peroxiredoxin [Guillardia theta CCMP2712] >gi|4281... [more]
gi|1130427873|ref|WP_075596620.1|4.172e-3946.56peroxiredoxin [Oscillatoriales cyanobacterium 'hen... [more]
gi|1084664181|gb|OGP12280.1|3.021e-3848.54peroxiredoxin [Deltaproteobacteria bacterium GWA2_... [more]
gi|505033303|ref|WP_015220405.1|6.533e-3846.52peroxiredoxin [Cyanobacterium aponinum] >gi|428685... [more]
gi|1175275996|ref|WP_081823791.1|1.999e-3647.44peroxiredoxin [Acidobacterium ailaaui][more]
gi|499455914|ref|WP_011143378.1|2.044e-3646.34peroxiredoxin [Gloeobacter violaceus] >gi|37522958... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8384rna8384Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications