EWM22322.1, cds8356 (CDS) Nannochloropsis gaditana

Overview
NameEWM22322.1
Unique Namecds8356
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:536432..536475 +
Alignment locationKK037248.1:536598..537531 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22322.1
Productpyridoxamine 5 -phosphate oxidase- fmn-binding protein
Orig transcript idgnl|cribi|Naga_100118g20.2749.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:536432..536475 +
KK037248.1supercontigKK037248.1:536598..537531 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0010181FMN binding
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR024624Pyridox_Oxase_Alr4036_FMN-bd
IPR012349Split_barrel_FMN-bd
Homology
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|585102819|gb|EWM22322.1| (pyridoxamine 5 -phosphate oxidase- fmn-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 674.085 bits (1738), Expect = 0.000e+0
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query:    1 MPIHLIYSRHPVRGSGLCKFFLLVATLISGTTAGFPFCCWSSKSLILMAAATPTAGSNEGLRDIGGTCVVSKNDQSDPRETVASASQPPWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP 325
            MPIHLIYSRHPVRGSGLCKFFLLVATLISGTTAGFPFCCWSSKSLILMAAATPTAGSNEGLRDIGGTCVVSKNDQSDPRETVASASQPPWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP
Sbjct:    1 MPIHLIYSRHPVRGSGLCKFFLLVATLISGTTAGFPFCCWSSKSLILMAAATPTAGSNEGLRDIGGTCVVSKNDQSDPRETVASASQPPWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP 325          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|585113295|gb|EWM30619.1| (pyridoxamine 5 -phosphate oxidase- fmn-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 164.466 bits (415), Expect = 7.271e-45
Identity = 122/346 (35.26%), Postives = 168/346 (48.55%), Query Frame = 0
Query:    1 MPIHLIYSRHPVRGSG-------LCKFFLLVATLISGT-TAGF---PFCCWSSKSLILMAAATPTAGSNEGLRDIGG--TCVVSKNDQSDPRETVASASQPPWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLN----ENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPG----LNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP 325
            MP+H +  R+P+  S        LC   +L AT ++      F   PF  + S SL  MA          GL DIG   +   + ++  D         +P WV  L  ++  N  D HSR++QLAT+    F   +++          +++P VR VVFRGF N    ++    K+ITD+RSEKI ++  +P  EI+WYF++TREQ+RL GR ++VT    D  L  AR  QW  LS++AR QF WP P     L+QD    S D       PP +   S PPETF LLL     VDHL L+ +PQ RTVH                +G+   E   W   +VNP
Sbjct:    1 MPVHFL--RNPLLCSVSHTATTLLCALPVLRATFVAPVRNIAFLHSPFNRFPS-SLTPMATMKAAEIGEGGLADIGQARSSSPTASNADDASHGARGEKKPKWVLDLGISMARNNRDAHSRYIQLATVG---FGSDDSS----------VIKPFVRTVVFRGFYNGMDPQDKHLLKIITDARSEKIPQLTLHPDAEIAWYFVKTREQYRLRGRVEIVTPTSKDRHLQAARKQQWNNLSESARAQFLWPYPKHPSPLDQDPSVFSPDI------PPTL--ASAPPETFCLLLVRVSEVDHLDLKASPQRRTVHA-------------RRKGQKEGEEGDWEVTKVNP 309          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|1210166280|dbj|BAY85361.1| (pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Calothrix parasitica NIES-267])

HSP 1 Score: 157.918 bits (398), Expect = 9.191e-44
Identity = 96/237 (40.51%), Postives = 121/237 (51.05%), Query Frame = 0
Query:   89 PWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP 325
            PW   L NAL+ N++  HSR+ QLAT+      + + T             P  R VVFRGFL E+T  FK+ITD+RSEKI EI    +GEI WYF  +REQFR+AG   ++  +  D  L   R   W  LSDNAR QF+WP P       G S D ++A    P  P  + P + F LLLF P  VDHL+LR  PQ RT++E                    DE   W  + VNP
Sbjct:    5 PWRSFLANALKKNRSQAHSRYFQLATV------RNDGT-------------PANRTVVFRGFL-EDTNKFKIITDTRSEKITEIQNRSWGEICWYFTNSREQFRIAGNIIIIDVNYQDSELQTVRESTWQDLSDNARIQFAWPHP-------GASRDNQEAF--SPQQPDENKPLDNFCLLLFEPVKVDHLRLRGEPQNRTIYER-------------------DEMGVWDVKEVNP 193          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|550277730|ref|WP_022604232.1| (FMN-dependent protein [Rubidibacter lacunae] >gi|549083654|gb|ERN42883.1| PPOX class probable FMN-dependent enzyme, alr4036 family [Rubidibacter lacunae KORDI 51-2])

HSP 1 Score: 156.377 bits (394), Expect = 4.727e-43
Identity = 92/213 (43.19%), Postives = 122/213 (57.28%), Query Frame = 0
Query:   89 PWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVH---ETVQWSI 298
            PW   +  AL  N++D H+RF QLAT+                  P G  RP  R VVFRGF   NT T +V+TD+RSEK+ +I + P+GE+ WYF +TREQFR+AGR + V+AD  D  L   R ++W  LSD+AR QF WP P  ++DSD      R A +   P   T  P  TF LLL  P +VD L+LR +PQ RT+    +  +WS+
Sbjct:    5 PWRSPIARALHRNRSDAHARFFQLATVM-----------------PDG--RPANRTVVFRGFF-PNTDTLEVVTDARSEKVAQIDRQPWGEVCWYFTKTREQFRIAGRLKFVSADATDADLQRERQERWYDLSDSARLQFIWPQPKASRDSD------RNAFFVKAPAANTK-PASTFNLLLVEPVAVDWLELRGDPQNRTLFLQTDDGKWSV 190          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|935607260|ref|WP_054469137.1| (pyridoxamine 5'-phosphate oxidase [Planktothricoides sp. SR001] >gi|923468737|gb|KOR34745.1| pyridoxamine 5'-phosphate oxidase [Planktothricoides sp. SR001])

HSP 1 Score: 152.525 bits (384), Expect = 1.305e-41
Identity = 96/215 (44.65%), Postives = 120/215 (55.81%), Query Frame = 0
Query:   89 PWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGL-NQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQ--WSINK 300
            PW   L  A   N++  ++R+VQLAT+                  P G  RP  R VVFRGFL++ T   K +TD RSEK  +I + P+ E+ WYF +TREQFRL GR  LVT   LDPVLAVAR   WA LSD AR QF+WP PG   ++ DG         +NPPP      P   F LLL  P SVDHL+LR +PQ R +++     WSI +
Sbjct:    6 PWRSPLGRAQHRNRSLPNARYVQLATV-----------------RPNG--RPANRTVVFRGFLDQ-TNQLKFVTDFRSEKPDQIDRCPWAEVCWYFPKTREQFRLQGRLTLVTDTHLDPVLAVAREKAWAELSDAARSQFAWPHPGHPRENGDG---------FNPPPT-AADRPLSHFCLLLLDPLSVDHLELRGDPQNRRLYQRQNDGWSIQE 190          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|504947538|ref|WP_015134640.1| (pyridoxamine 5'-phosphate oxidase-like FMN-binding protein [Leptolyngbya sp. PCC 7376] >gi|427356162|gb|AFY38885.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Leptolyngbya sp. PCC 7376])

HSP 1 Score: 150.984 bits (380), Expect = 4.864e-41
Identity = 85/206 (41.26%), Postives = 119/206 (57.77%), Query Frame = 0
Query:   89 PWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGL--NQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHE 292
            PW   L+ AL  N++ MH RF QLAT+                 +P+GL  P  R VVFRGF+ E T   K+ITD RS+KI+ +  +   EI+WYF +TREQFRLAG  ++V AD+L+      R   W  +SD+AR QF+WP+P    N +SD  + +T            +  P ++FVLL+F P +VDHL+LR NPQ R +++
Sbjct:    9 PWRSPLSRALHRNRSQMHCRFFQLATV-----------------TPEGL--PTNRTVVFRGFV-EQTNYLKIITDRRSQKIEHLASHNQAEIAWYFTKTREQFRLAGTIEMVNADDLESDFFQERQQTWETISDSARSQFAWPSPTAQRNINSDDFNVET----------SSSKSPLDSFVLLIFQPHTVDHLELRGNPQNRFIYK 184          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|516350456|ref|WP_017740489.1| (hypothetical protein [Scytonema hofmannii] >gi|1004813747|gb|KYC39709.1| pyridoxamine 5'-phosphate oxidase [Scytonema hofmannii PCC 7110])

HSP 1 Score: 150.599 bits (379), Expect = 7.627e-41
Identity = 90/213 (42.25%), Postives = 116/213 (54.46%), Query Frame = 0
Query:   89 PWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVH---ETVQWSI 298
            PW   L  AL  N++D HSR+ QLAT+                   Q   RP  R VVFRGFL E+T   K+ITD+RS+K  +I    +GE  WYF  TREQFR AG   LV A+  DP +  AR   W  +SDNAR QF+WPAPG ++ S        +  ++P P P ++ P   F LLL  P  VDHL+LR +PQ R  +   E+  WS+
Sbjct:    6 PWRSPLARALHRNRSDSHSRYFQLATV-------------------QADGRPANRTVVFRGFL-EDTNYLKIITDTRSQKFNQIKDRAWGEACWYFTNTREQFRFAGELVLVDANHPDPKMQKARQIAWQEISDNARLQFAWPAPGESRSS--------QEAFSPSP-PDSTLPLSNFCLLLLDPVQVDHLELRGDPQNRWCYLQDESQTWSV 189          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|501599217|ref|WP_012598973.1| (pyridoxamine 5'-phosphate oxidase [Cyanothece sp. PCC 7424] >gi|218171296|gb|ACK70029.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Cyanothece sp. PCC 7424])

HSP 1 Score: 150.599 bits (379), Expect = 8.421e-41
Identity = 97/244 (39.75%), Postives = 125/244 (51.23%), Query Frame = 0
Query:   82 VASASQPPWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP 325
            + S S  PW  AL+ AL  N++  +SR+ QLATI                 +P+G   P+ R VVFRG+L +NT   K++TD RSEK+ +I   P+GEI WYF +TREQFRL+GR  L+T +  D  L   R   W  LSD+AR QF+WP PG  +  D        A     P P    P E F LLL  P  VDHL+LR NPQ R  +                    +DES  W A+ +NP
Sbjct:    1 MMSDSLAPWRVALSRALHLNRSQPYSRYFQLATI-----------------TPEGF--PKNRTVVFRGYL-DNTNQIKIVTDLRSEKVNQINYQPWGEICWYFTKTREQFRLSGRLTLITPNYPDSTLQKERQLAWQQLSDSARLQFTWPEPGQLRIEDN------SAFSAASPAP--EHPLEHFCLLLLDPEKVDHLELRGNPQNRCQY-------------------YLDESKNWIAQSINP 197          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|1100944525|ref|WP_071453949.1| (pyridoxamine 5'-phosphate oxidase [Gloeomargarita lithophora] >gi|1100592769|gb|APB33355.1| pyridoxamine 5'-phosphate oxidase-like protein [Gloeomargarita lithophora Alchichica-D10])

HSP 1 Score: 147.517 bits (371), Expect = 9.115e-40
Identity = 87/237 (36.71%), Postives = 119/237 (50.21%), Query Frame = 0
Query:   89 PWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHETVQWSINKQPDGIEIRGEGVDESDAWAARRVNP 325
            PW   L  AL  N++  HSR+ QLAT+                  PQG   P  R +VFRGF   +T T + ITD RSEK+ +I QNP+GE+ WYF  TREQFRLAG  Q++     +     AR  +W +LSD +R+QF+WP PG  +  D  ++           VP  + PP++F LL  HP  VDHL+LR  PQ R  ++                    D++  W  + +NP
Sbjct:    5 PWRTPLARALHRNRSLPHSRYAQLATV-----------------DPQGC--PHNRSIVFRGF-PADTNTLEFITDQRSEKVSQIYQNPWGELCWYFPHTREQFRLAGELQIIDNSSTESPTQTARQHRWQSLSDTSRQQFTWPHPGHPRTGDLTTD-----------VPDPTTPPDSFCLLWLHPQRVDHLELRGTPQNRYCYQQ-------------------DKNQTWTVQEINP 191          
BLAST of EWM22322.1 vs. NCBI_GenBank
Match: gi|1121299297|ref|WP_073611121.1| (pyridoxamine 5'-phosphate oxidase [Phormidium tenue] >gi|1115280303|gb|OKH43527.1| pyridoxamine 5'-phosphate oxidase [Phormidium tenue NIES-30])

HSP 1 Score: 147.902 bits (372), Expect = 9.935e-40
Identity = 91/214 (42.52%), Postives = 116/214 (54.21%), Query Frame = 0
Query:   89 PWVHALNNALEANKADMHSRFVQLATIAHFSFAKQETTDVSENISPQGLLRPRVRWVVFRGFLNENTTTFKVITDSRSEKIKEILQNPYGEISWYFIQTREQFRLAGRCQLVTADELDPVLAVARHDQWAALSDNARKQFSWPAPGLNQDSDGISEDTRKALYNPPPVPGTSPPPETFVLLLFHPFSVDHLQLRPNPQVRTVHET---VQWSIN 299
            PW  AL  AL  N++  +SR+ QLAT+                       RP  R VVFRG+L  N+ T  +ITD RS K+ +I+ +P+ E  WYF  TREQFRLAG  Q+VTA E DP L  AR + W ALSDNAR+QF WP P            T +A ++P  +  T  PP  F L+L  P  VDHL+LR  PQ RT+++      W IN
Sbjct:   16 PWRSALARALHRNRSRPYSRYFQLATVTSSG-------------------RPANRTVVFRGWL-PNSNTLTLITDQRSAKVADIVAHPWAEACWYFTDTREQFRLAGSIQVVTA-EADPALLQARQNSWEALSDNARQQFYWPHPA--------QPRTAEADFSPKEIQAT--PPAEFCLVLLEPDQVDHLELRGEPQNRTLYDQQPGSTWQIN 198          
The following BLAST results are available for this feature:
BLAST of EWM22322.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102819|gb|EWM22322.1|0.000e+0100.00pyridoxamine 5 -phosphate oxidase- fmn-binding pro... [more]
gi|585113295|gb|EWM30619.1|7.271e-4535.26pyridoxamine 5 -phosphate oxidase- fmn-binding pro... [more]
gi|1210166280|dbj|BAY85361.1|9.191e-4440.51pyridoxamine 5'-phosphate oxidase-related FMN-bind... [more]
gi|550277730|ref|WP_022604232.1|4.727e-4343.19FMN-dependent protein [Rubidibacter lacunae] >gi|5... [more]
gi|935607260|ref|WP_054469137.1|1.305e-4144.65pyridoxamine 5'-phosphate oxidase [Planktothricoid... [more]
gi|504947538|ref|WP_015134640.1|4.864e-4141.26pyridoxamine 5'-phosphate oxidase-like FMN-binding... [more]
gi|516350456|ref|WP_017740489.1|7.627e-4142.25hypothetical protein [Scytonema hofmannii] >gi|100... [more]
gi|501599217|ref|WP_012598973.1|8.421e-4139.75pyridoxamine 5'-phosphate oxidase [Cyanothece sp. ... [more]
gi|1100944525|ref|WP_071453949.1|9.115e-4036.71pyridoxamine 5'-phosphate oxidase [Gloeomargarita ... [more]
gi|1121299297|ref|WP_073611121.1|9.935e-4042.52pyridoxamine 5'-phosphate oxidase [Phormidium tenu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8383rna8383Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications