EWM22328.1, cds8354 (CDS) Nannochloropsis gaditana

Overview
NameEWM22328.1
Unique Namecds8354
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:534539..534770 -
Alignment locationKK037248.1:533397..533545 -

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Properties
Property NameValue
Protein idEWM22328.1
ProductZinc finger, C2H2
Orig transcript idgnl|cribi|Naga_100118g18.2755.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:534539..534770 -
KK037248.1supercontigKK037248.1:533397..533545 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Znf_C2H2
IPR013087Znf_C2H2/integrase_DNA-bd
Homology
[Close]
BLAST of EWM22328.1 vs. NCBI_GenBank
Match: gi|585102825|gb|EWM22328.1| (Zinc finger, C2H2 [Nannochloropsis gaditana])

HSP 1 Score: 226.483 bits (576), Expect = 1.269e-74
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MEENSLDNFETNRGVERSAADSSSSDSSSSSDSSSSSDSSSSSDSSSSSRDSSSSSSSSRSRRKSSSSSSSSSSSSRNRASERKKPYQCDRCEASFGIAPDLSEHFHRLHGVTKHPSQIVPTAVIF 126
            MEENSLDNFETNRGVERSAADSSSSDSSSSSDSSSSSDSSSSSDSSSSSRDSSSSSSSSRSRRKSSSSSSSSSSSSRNRASERKKPYQCDRCEASFGIAPDLSEHFHRLHGVTKHPSQIVPTAVIF
Sbjct:    1 MEENSLDNFETNRGVERSAADSSSSDSSSSSDSSSSSDSSSSSDSSSSSRDSSSSSSSSRSRRKSSSSSSSSSSSSRNRASERKKPYQCDRCEASFGIAPDLSEHFHRLHGVTKHPSQIVPTAVIF 126
The following BLAST results are available for this feature:
BLAST of EWM22328.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102825|gb|EWM22328.1|1.269e-74100.00Zinc finger, C2H2 [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8381rna8381Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications