EWM22384.1, cds8300 (CDS) Nannochloropsis gaditana

Overview
NameEWM22384.1
Unique Namecds8300
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:382729..385851 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22384.1
Productrho gtpase-activating protein 39
Orig transcript idgnl|cribi|Naga_100066g14.10341.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:382729..385851 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR008936Rho_GTPase_activation_prot
IPR001849PH_domain
IPR000857MyTH4_dom
IPR011993PH-like_dom
IPR000198RhoGAP_dom
Homology
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|585102885|gb|EWM22384.1| (rho gtpase-activating protein 39 [Nannochloropsis gaditana])

HSP 1 Score: 2139.38 bits (5542), Expect = 0.000e+0
Identity = 1040/1040 (100.00%), Postives = 1040/1040 (100.00%), Query Frame = 0
Query:    1 MQAASPEHIYDDILYVEEDAEQSVELSQEARCRVKEGKDGEDSEDGSSDGYLEEEEEEGEEENDLRGTFEDNFDAFVDDWGEEDEFTCAWDRSRSNEASEARGNEAAELRQLSLEVSNTGVKLDGNTTLDTLAVTAGRRRSTLYHTFTQSLLMEAKLHQQQRDNFQRGRLRHAVYVLQRGFSLKKKAEHEKSYKERFLFLSDDLRSLRLAKSGQTRHKAKHIAQLRDGLQMVRAGPTLRHRRDAEQLNFHSTTFTLHVRKGKEGSFSHLGHGGLTGTTPPGPEKVIDIWCSSESHCEEWLKCLPLIVNATVCPEHGPRELIWSEPVGQGAGMEAGGWVEGPRPYLEGLAEELARSSIVYYMDVQQRRLRRRTLRQSAQGRDIGAAVAAAMAVHGGDKSKTPHQRSTDNSSGSQASSNTTAGKGEGQGNHNGSHLQNAMKKMHIEHFLSKAREGHGGGSPSGPGLEPVHPATTAASAAASAAVLLLRPRSLNELLSFHASPTKRPFHAYLREEGAAAALKAFRLIMVYMGDLDAVVQEEEQEPGEEGHLWKSPRPHRPAGGSCTSQNNGSDRLRHHSFSSTASISWPFPGGQTQAPRPFSSPSPSESPQSSFSCSSPASKAGEADGEAQHALLLHLCALGQAPSREPGACLKPHAWMHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQFNQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRALVSPAEPSPTTASPSVPPLVSSR 1040
            MQAASPEHIYDDILYVEEDAEQSVELSQEARCRVKEGKDGEDSEDGSSDGYLEEEEEEGEEENDLRGTFEDNFDAFVDDWGEEDEFTCAWDRSRSNEASEARGNEAAELRQLSLEVSNTGVKLDGNTTLDTLAVTAGRRRSTLYHTFTQSLLMEAKLHQQQRDNFQRGRLRHAVYVLQRGFSLKKKAEHEKSYKERFLFLSDDLRSLRLAKSGQTRHKAKHIAQLRDGLQMVRAGPTLRHRRDAEQLNFHSTTFTLHVRKGKEGSFSHLGHGGLTGTTPPGPEKVIDIWCSSESHCEEWLKCLPLIVNATVCPEHGPRELIWSEPVGQGAGMEAGGWVEGPRPYLEGLAEELARSSIVYYMDVQQRRLRRRTLRQSAQGRDIGAAVAAAMAVHGGDKSKTPHQRSTDNSSGSQASSNTTAGKGEGQGNHNGSHLQNAMKKMHIEHFLSKAREGHGGGSPSGPGLEPVHPATTAASAAASAAVLLLRPRSLNELLSFHASPTKRPFHAYLREEGAAAALKAFRLIMVYMGDLDAVVQEEEQEPGEEGHLWKSPRPHRPAGGSCTSQNNGSDRLRHHSFSSTASISWPFPGGQTQAPRPFSSPSPSESPQSSFSCSSPASKAGEADGEAQHALLLHLCALGQAPSREPGACLKPHAWMHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQFNQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRALVSPAEPSPTTASPSVPPLVSSR
Sbjct:    1 MQAASPEHIYDDILYVEEDAEQSVELSQEARCRVKEGKDGEDSEDGSSDGYLEEEEEEGEEENDLRGTFEDNFDAFVDDWGEEDEFTCAWDRSRSNEASEARGNEAAELRQLSLEVSNTGVKLDGNTTLDTLAVTAGRRRSTLYHTFTQSLLMEAKLHQQQRDNFQRGRLRHAVYVLQRGFSLKKKAEHEKSYKERFLFLSDDLRSLRLAKSGQTRHKAKHIAQLRDGLQMVRAGPTLRHRRDAEQLNFHSTTFTLHVRKGKEGSFSHLGHGGLTGTTPPGPEKVIDIWCSSESHCEEWLKCLPLIVNATVCPEHGPRELIWSEPVGQGAGMEAGGWVEGPRPYLEGLAEELARSSIVYYMDVQQRRLRRRTLRQSAQGRDIGAAVAAAMAVHGGDKSKTPHQRSTDNSSGSQASSNTTAGKGEGQGNHNGSHLQNAMKKMHIEHFLSKAREGHGGGSPSGPGLEPVHPATTAASAAASAAVLLLRPRSLNELLSFHASPTKRPFHAYLREEGAAAALKAFRLIMVYMGDLDAVVQEEEQEPGEEGHLWKSPRPHRPAGGSCTSQNNGSDRLRHHSFSSTASISWPFPGGQTQAPRPFSSPSPSESPQSSFSCSSPASKAGEADGEAQHALLLHLCALGQAPSREPGACLKPHAWMHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQFNQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRALVSPAEPSPTTASPSVPPLVSSR 1040          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|694534507|ref|XP_009495055.1| (hypothetical protein H696_02885 [Fonticula alba] >gi|627948631|gb|KCV70539.1| hypothetical protein H696_02885 [Fonticula alba])

HSP 1 Score: 133.65 bits (335), Expect = 3.245e-28
Identity = 113/362 (31.22%), Postives = 164/362 (45.30%), Query Frame = 0
Query:  659 LRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCA--ELSQFNQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRAL 1018
            +R+ELYV    Q   N +  S + GW L+  +A SF P+ D     L + ADR      AP      +G G    G  +S           AS      Y  F   +R L+         G  G+      T+ EL+R     I P+VF   LEEV+R +                  +      ++P I+  L      L G   EGIFR    TE +  ++  +++ ++V+ G      TDP V A L K WLR L +PL+P   Y   +  G + D A  LA LD V P+ +   + Y+I FL   A  E     +M P NLA+VF+PN LR PS+DPM++++  + E+ FV+QL+  L
Sbjct:  506 MRDELYVQLCKQLNGNQNTVSIMLGWALMAVYAVSFPPSKDFDNYLLSFTADRLIG--VAPMTSEGYTGLGLTPPGPADSGTNIPPPSMSPASADRIATYIQFC--QRKLRH----IAVVGPRGKTP----TLGELERAVEAPIRPSVFGEPLEEVMRLQ------------------QRACPEMSIPRILPFLTDAIVRLGGERTEGIFRVPGDTEMISELRLRIDNQNFVLEG-----ITDPCVPAGLFKLWLRELTDPLIPHDLYDACV--GASSDTAACLALLDKV-PEMSRRVIEYVIRFLQRVARPENQVHTKMGPANLAMVFAPNFLRCPSSDPMVILEYTKYEQTFVMQLIENL 829          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|1183467348|gb|ORY91281.1| (Rho GTPase activation protein [Syncephalastrum racemosum])

HSP 1 Score: 116.316 bits (290), Expect = 3.960e-23
Identity = 99/384 (25.78%), Postives = 163/384 (42.45%), Query Frame = 0
Query:  659 LRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCA--ELSQFNQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRALVSPAEPSPTTASPSVPPLVSSR 1040
            +R+E+YV    Q   NP   S  +GW +L   + +F P+ + L   L    ++  H                      +  E+    + L A+                      R CA G +G+     LT AE++R +     P++FD SLE ++   + V        G GL           +P IV  L     +++G E EGIFR     E V  ++  +E+G Y     +  D +DP V A LLK WLRHL EPL+  +HY   +   +  + A  +      LP  N   +++++ F+      ++    +M   NLA+V +PN LR PS     + +N++ E+ FV    + L++  +   T  + S  P+VS +
Sbjct:  268 MRDEIYVQVCKQLHNNPSGKSIRKGWEILCVISVTFPPSKN-LESYLTNFVEQNKHV---------------------KENEVDVMSQHLSATL--------------------KRICARGAKGKV----LTAAEIERAKVSPFKPSIFDESLETIMALPVHV--------GDGL----------KIPKIVPFLTNAVLQMKGTESEGIFRVPGDAEEVTDLRVRIENGKY-----DIGDISDPNVPASLLKYWLRHLSEPLITDEHYDACIRGSENAEQAIRIV---NSLPDVNRRIVLFMMQFVQQFTDPDVIAHTRMNVHNLAMVLAPNFLRCPSESLTTVFENSKYEQAFV----KTLITHLDTDTTACAYSDEPVVSVK 575          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|884794848|ref|XP_012983935.1| (PREDICTED: rho GTPase-activating protein 39-like [Melopsittacus undulatus])

HSP 1 Score: 112.079 bits (279), Expect = 2.119e-21
Identity = 101/365 (27.67%), Postives = 159/365 (43.56%), Query Frame = 0
Query:  656 MHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPT---DDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQF--NQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLM 1015
            M  LR+ELY+  + QT  N    S   GW L+      F P+      L   +  H D+  +   A      A    + +   R+ ++  T   GL  S  A + Y       R LQ+        G++G   P   TV E+   +  ++ P++F  SLEE++ ++  +  G                    +P +   L ++   L G + EGIFR     + V A+K  L+   + +  +     +DP + A LLK W R L EP++P Q Y+  +   +  D A  +  L   LP+ N   L YLIHFL   A+ S     +M   NLA+V +PN LR  S+DP ++ +N   E  F+  L+
Sbjct:  675 MQGLRDELYIQLIRQTTDNTCYRSLAWGWELMAISLAFFSPSPKFQSYLEGYIYRHLDKPFNFSVAQRIKELADLKNKKNSKSRKKRKQNTEDEGLPISTYAKYCY-------RKLQK---VAVTGGKKGLRKP---TVEEITHARNAIVTPSLFGSSLEEIMLRQQDMYPGN------------------KLPWVQTQLSQQVLALGGEQTEGIFRIPGDIDEVNALK--LQVDQWRIPSS----LSDPNIPASLLKLWYRELEEPVIPQQFYKECISNYENPDAAVAVVQL---LPELNRLVLCYLIHFLQIFAQPSNVGRTKMDVNNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRMLI 999          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|1011603520|gb|KYO40988.1| (rho GTPase-activating protein 39-like isoform A [Alligator mississippiensis])

HSP 1 Score: 109.768 bits (273), Expect = 6.251e-21
Identity = 106/367 (28.88%), Postives = 157/367 (42.78%), Query Frame = 0
Query:  659 LRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPT---DDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEV--LRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQF--NQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRAL 1018
            LR+ELY+  + QT  N    S  RGW L+      F P+      L   +  H D    +Y             + +   R+ ++  T   GL  S  A + Y       R LQ+        G++G   P   T+ E+   +  ++ P++F  SLEE+  L+KE+          G  LP  +  L         QVL      L G + EGIFR     + V A+K  ++  S         + +DP + A LLK W R L EPL+P + Y   + + +  D A T+      LP  N   L YLIHFL   A+       +M   NLA+V +PN LR  S+DP ++ +N   E  F+  L+  L
Sbjct:  322 LRDELYIQLIRQTTDNTCYQSLARGWELMAISLAFFSPSPKFQSYLEGYIYCHLDS--DRYIVQRIKKLLDLKNKKNSKSRKKRKQNTNDEGLPISTYARYCY-------RKLQKVA---VTGGKKGLQKP---TIEEIAHARNTIVTPSLFGSSLEEIMLLQKEIY--------PGNKLPWIQTQLSQ-------QVL-----ALGGEQTEGIFRVPGDIDEVNALKLQVDQWSI------PSNCSDPSIPASLLKLWYRELEEPLIPQRFYEECIGSYENPDAAVTVV---QFLPDLNKFVLYYLIHFLQIFAQPYNVGKTKMDVNNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRMLIVHL 644          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|944354741|ref|XP_014379812.1| (PREDICTED: rho GTPase-activating protein 39-like isoform X1 [Alligator sinensis])

HSP 1 Score: 109.768 bits (273), Expect = 1.212e-20
Identity = 99/368 (26.90%), Postives = 154/368 (41.85%), Query Frame = 0
Query:  656 MHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPT---DDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQF--NQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRAL 1018
            +  LR+ELY+  + QT  N    S   GW L+      F P+      L   +  H D    +Y             + +   R+ ++  T   GL  S  A +         R LQ+        G++G   P   T+ E+   +  ++ P++F  SLEE++ ++  +  G                    +P I   L ++   L G + EGIFR     + V A+K  ++  S         + +DP + A LLK W R L EPL+P Q Y   + + +  D A T+      LP  N   L YLIHFL   A+       +M   NLA+V +PN LR  S+DP ++ +N   E  F+  L+  L
Sbjct:  695 IQGLRDELYIQLIRQTTDNTCYQSLAWGWELMAISLAFFSPSPKFQSYLEGYIYCHLD--SDRYIVQRIKKLLDLKNKKNSKSRKKRKQNTNDEGLPISTYARYCC-------RKLQKVA---VTGGKKGLQKP---TIEEITHARNTIVTPSLFGSSLEEIMLRQKEIYPGN------------------KLPWIQTQLSQQVLALGGEQTEGIFRVPGDIDEVNALKLQVDQWSI------PSNCSDPSIPASLLKLWYRELEEPLIPQQFYEECIGSYENPDAAVTVV---QFLPDLNKFVLYYLIHFLQIFAQPYNVGKTKMDVNNLAMVMAPNCLRCQSDDPQVIFENTRKEMSFLRMLIVHL 1020          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|944354743|ref|XP_014379814.1| (PREDICTED: rho GTPase-activating protein 39-like isoform X2 [Alligator sinensis])

HSP 1 Score: 109.383 bits (272), Expect = 1.574e-20
Identity = 99/368 (26.90%), Postives = 154/368 (41.85%), Query Frame = 0
Query:  656 MHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPT---DDDLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQF--NQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLMRAL 1018
            +  LR+ELY+  + QT  N    S   GW L+      F P+      L   +  H D    +Y             + +   R+ ++  T   GL  S  A +         R LQ+        G++G   P   T+ E+   +  ++ P++F  SLEE++ ++  +  G                    +P I   L ++   L G + EGIFR     + V A+K  ++  S         + +DP + A LLK W R L EPL+P Q Y   + + +  D A T+      LP  N   L YLIHFL   A+       +M   NLA+V +PN LR  S+DP ++ +N   E  F+  L+  L
Sbjct:  563 IQGLRDELYIQLIRQTTDNTCYQSLAWGWELMAISLAFFSPSPKFQSYLEGYIYCHLDS--DRYIVQRIKKLLDLKNKKNSKSRKKRKQNTNDEGLPISTYARYCC-------RKLQKVA---VTGGKKGLQKP---TIEEITHARNTIVTPSLFGSSLEEIMLRQKEIYPGN------------------KLPWIQTQLSQQVLALGGEQTEGIFRVPGDIDEVNALKLQVDQWSI------PSNCSDPSIPASLLKLWYRELEEPLIPQQFYEECIGSYENPDAAVTVV---QFLPDLNKFVLYYLIHFLQIFAQPYNVGKTKMDVNNLAMVMAPNCLRCQSDDPQVIFENTRKEMSFLRMLIVHL 888          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|512871914|ref|XP_002932938.2| (PREDICTED: rho GTPase-activating protein 39-like isoform X1 [Xenopus tropicalis])

HSP 1 Score: 109.383 bits (272), Expect = 1.610e-20
Identity = 101/381 (26.51%), Postives = 157/381 (41.21%), Query Frame = 0
Query:  649 CLKPHAW-MHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDD-----------DLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQF--NQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLM 1015
             L    W M  LR+ELY+  + QT  N    S   GW L+      F P+              L E    +  +  H+              +  + G E +E      GL  S  A + Y       R LQ+        G++G   P   T+ E+++ ++ ++ P++F  SLEE++ ++  V                    +  +P +   L +    L G + EGIFR     + V A+K  +E            +  DP V A LLK W R L EPL+P Q Y++ +   +  D A ++      LP  N   L YLIHFL   ++ S     +M   NLA+V +PN LR  S+DP ++ +N   E  F+  L+
Sbjct:  675 VLVTKCWSMQGLRDELYMQLVRQTTNNMTYRSLAYGWELMAISLGFFSPSPKFQSYLEGYIYKHLEEANDLNITQRIHEVQELKTKKITKSRKKRKQNGDEEEE------GLPISTYAKYCY-------RKLQKVA---ITGGKKGLRKP---TIEEIEQARSAILTPSLFGSSLEEIMERQREV------------------YPDRQLPWVQTQLSQAVLALGGEQTEGIFRVPGDIDEVNALKVQVEQWRI------PDNLEDPTVPASLLKLWYRELEEPLIPQQFYKQCISNYENPDAAVSVVHQ---LPDLNRLVLGYLIHFLQIFSQPSNVGTTKMDVNNLAMVMAPNCLRCQSDDPRIIFENTRKEMSFLRMLI 1009          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|1043408597|gb|OCA21232.1| (hypothetical protein XENTR_v90025460mg [Xenopus tropicalis])

HSP 1 Score: 108.997 bits (271), Expect = 1.986e-20
Identity = 101/381 (26.51%), Postives = 157/381 (41.21%), Query Frame = 0
Query:  649 CLKPHAW-MHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDD-----------DLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQF--NQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLM 1015
             L    W M  LR+ELY+  + QT  N    S   GW L+      F P+              L E    +  +  H+              +  + G E +E      GL  S  A + Y       R LQ+        G++G   P   T+ E+++ ++ ++ P++F  SLEE++ ++  V                    +  +P +   L +    L G + EGIFR     + V A+K  +E            +  DP V A LLK W R L EPL+P Q Y++ +   +  D A ++      LP  N   L YLIHFL   ++ S     +M   NLA+V +PN LR  S+DP ++ +N   E  F+  L+
Sbjct:  651 VLVTKCWSMQGLRDELYMQLVRQTTNNMTYRSLAYGWELMAISLGFFSPSPKFQSYLEGYIYKHLEEANDLNITQRIHEVQELKTKKITKSRKKRKQNGDEEEE------GLPISTYAKYCY-------RKLQKVA---ITGGKKGLRKP---TIEEIEQARSAILTPSLFGSSLEEIMERQREV------------------YPDRQLPWVQTQLSQAVLALGGEQTEGIFRVPGDIDEVNALKVQVEQWRI------PDNLEDPTVPASLLKLWYRELEEPLIPQQFYKQCISNYENPDAAVSVVHQ---LPDLNRLVLGYLIHFLQIFSQPSNVGTTKMDVNNLAMVMAPNCLRCQSDDPRIIFENTRKEMSFLRMLI 985          
BLAST of EWM22384.1 vs. NCBI_GenBank
Match: gi|512871918|ref|XP_004918561.1| (PREDICTED: rho GTPase-activating protein 39-like isoform X2 [Xenopus tropicalis])

HSP 1 Score: 108.612 bits (270), Expect = 2.309e-20
Identity = 101/381 (26.51%), Postives = 157/381 (41.21%), Query Frame = 0
Query:  649 CLKPHAW-MHDLRNELYVAALAQTIQNPDPASCLRGWRLLVAFAHSFMPTDD-----------DLRECLIWHADRACHQYAAPPPLPPASGGGRGSEGGRESKEMRTGGRGLDASGLAYHAYTVFVNTERDLQQPPGRDCASGREGRAAPVGLTVAELDRIQALVIPPTVFDCSLEEVLRKELVVVRGGGGGGGGGLPSSEMLLENGNVPLIVQVLIRKFQELEGYEVEGIFRRAAVTERVLAVKQGLEDGSYVVYGTEAVDTTDPMVVADLLKAWLRHLREPLVPLQHYRRALDAGQAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQF--NQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLM 1015
             L    W M  LR+ELY+  + QT  N    S   GW L+      F P+              L E    +  +  H+              +  + G E +E      GL  S  A + Y       R LQ+        G++G   P   T+ E+++ ++ ++ P++F  SLEE++ ++  V                    +  +P +   L +    L G + EGIFR     + V A+K  +E            +  DP V A LLK W R L EPL+P Q Y++ +   +  D A ++      LP  N   L YLIHFL   ++ S     +M   NLA+V +PN LR  S+DP ++ +N   E  F+  L+
Sbjct:  535 VLVTKCWSMQGLRDELYMQLVRQTTNNMTYRSLAYGWELMAISLGFFSPSPKFQSYLEGYIYKHLEEANDLNITQRIHEVQELKTKKITKSRKKRKQNGDEEEE------GLPISTYAKYCY-------RKLQK---VAITGGKKGLRKP---TIEEIEQARSAILTPSLFGSSLEEIMERQREV------------------YPDRQLPWVQTQLSQAVLALGGEQTEGIFRVPGDIDEVNALKVQVEQWRI------PDNLEDPTVPASLLKLWYRELEEPLIPQQFYKQCISNYENPDAAVSVVHQ---LPDLNRLVLGYLIHFLQIFSQPSNVGTTKMDVNNLAMVMAPNCLRCQSDDPRIIFENTRKEMSFLRMLI 869          
The following BLAST results are available for this feature:
BLAST of EWM22384.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102885|gb|EWM22384.1|0.000e+0100.00rho gtpase-activating protein 39 [Nannochloropsis ... [more]
gi|694534507|ref|XP_009495055.1|3.245e-2831.22hypothetical protein H696_02885 [Fonticula alba] >... [more]
gi|1183467348|gb|ORY91281.1|3.960e-2325.78Rho GTPase activation protein [Syncephalastrum rac... [more]
gi|884794848|ref|XP_012983935.1|2.119e-2127.67PREDICTED: rho GTPase-activating protein 39-like [... [more]
gi|1011603520|gb|KYO40988.1|6.251e-2128.88rho GTPase-activating protein 39-like isoform A [A... [more]
gi|944354741|ref|XP_014379812.1|1.212e-2026.90PREDICTED: rho GTPase-activating protein 39-like i... [more]
gi|944354743|ref|XP_014379814.1|1.574e-2026.90PREDICTED: rho GTPase-activating protein 39-like i... [more]
gi|512871914|ref|XP_002932938.2|1.610e-2026.51PREDICTED: rho GTPase-activating protein 39-like i... [more]
gi|1043408597|gb|OCA21232.1|1.986e-2026.51hypothetical protein XENTR_v90025460mg [Xenopus tr... [more]
gi|512871918|ref|XP_004918561.1|2.309e-2026.51PREDICTED: rho GTPase-activating protein 39-like i... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8327rna8327Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications