EWM29788.1, cds829 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|585112369|gb|EWM29788.1| (60s ribosomal protein l11 [Nannochloropsis gaditana]) HSP 1 Score: 466.848 bits (1200), Expect = 1.335e-166 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query: 1 MCHCAWKDKGAVSRLDAVPRTASRGFALRRDPCFYFFSQSHSLYLRSTWLGTMADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 225
MCHCAWKDKGAVSRLDAVPRTASRGFALRRDPCFYFFSQSHSLYLRSTWLGTMADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG
Sbjct: 1 MCHCAWKDKGAVSRLDAVPRTASRGFALRRDPCFYFFSQSHSLYLRSTWLGTMADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 225
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|1127419563|gb|OLL23214.1| (60S ribosomal protein L11 [Neolecta irregularis DAH-3]) HSP 1 Score: 284.263 bits (726), Expect = 5.598e-95 Identity = 131/169 (77.51%), Postives = 150/169 (88.76%), Query Frame = 0
Query: 56 KKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
K NNPMREL +EKL+LN CVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVR+FGIRRNEKI+VHVT+RG KA EIL+RGLKVKEYEL+K+NFS+ GNFGFGI EHIDL +KYDPS GIYGMDFYVV+GRKG+RVGRRK RVGAPHRV + + + WF+ K++ +VL
Sbjct: 10 KLNNPMRELKIEKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGIQEHIDLNIKYDPSIGIYGMDFYVVMGRKGYRVGRRKRATSRVGAPHRVNKNETVSWFKNKYDAVVL 178
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|675206245|ref|XP_008912007.1| (60S ribosomal protein L11 [Phytophthora parasitica INRA-310] >gi|566014312|gb|ETI37223.1| 60S ribosomal protein L11 [Phytophthora parasitica P1569] >gi|567951752|gb|ETK77445.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|567980429|gb|ETL30892.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|568009937|gb|ETL84131.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|568039838|gb|ETM37312.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|568087925|gb|ETN02792.1| 60S ribosomal protein L11 [Phytophthora parasitica INRA-310] >gi|570318018|gb|ETO65966.1| 60S ribosomal protein L11 [Phytophthora parasitica P1976] >gi|570941819|gb|ETP07076.1| 60S ribosomal protein L11 [Phytophthora parasitica CJ01A1] >gi|570972211|gb|ETP35169.1| 60S ribosomal protein L11 [Phytophthora parasitica P10297] >gi|970645733|gb|KUF86116.1| 60S ribosomal protein L11-2 [Phytophthora nicotianae]) HSP 1 Score: 282.722 bits (722), Expect = 1.988e-94 Identity = 132/171 (77.19%), Postives = 152/171 (88.89%), Query Frame = 0
Query: 54 ADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
DK NNPMR++ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+ A EILDRGLKVKEYEL +KNFS+ GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRK++ RVG PHR+T+ DAI+WFQ KFEGIVL
Sbjct: 3 GDKSNNPMRDIHVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTIRGELAQEILDRGLKVKEYELLRKNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLKRPGARVARRKMQQSRVGHPHRLTKDDAINWFQTKFEGIVL 173
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|1214699640|gb|OWZ12395.1| (60S ribosomal protein L11 [Phytophthora megakarya]) HSP 1 Score: 281.567 bits (719), Expect = 6.128e-94 Identity = 132/171 (77.19%), Postives = 151/171 (88.30%), Query Frame = 0
Query: 54 ADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
DK NN MRE+ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+ A EILDRGLKVKEYEL +KNFS+ GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRK++ RVG PHR+T+ DAI+WFQ KFEGIVL
Sbjct: 9 GDKSNNAMREIHVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTIRGELAQEILDRGLKVKEYELLRKNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLKRPGARVARRKMQQSRVGHPHRLTKDDAINWFQSKFEGIVL 179
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|298707505|emb|CBJ30107.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 281.182 bits (718), Expect = 6.165e-94 Identity = 133/173 (76.88%), Postives = 152/173 (87.86%), Query Frame = 0
Query: 53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 225
MA+ K NPMR+L V+KL+LNC VGESGDRLTRAAKVLEQL+GQ+PVYSKARYTVRSFGIRRNEKI+ HVT+RGDKA EIL+RGLKVKEYELK+KNFS G+FGFGI EHIDLGLKYDPSTGIYGMDF+VVL R G+RV +RK K ++G H+VT+ DA+ WFQ KFEGIV G
Sbjct: 1 MAEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|698814338|ref|XP_009840198.1| (60S ribosomal protein L11 [Aphanomyces astaci] >gi|574104959|gb|ETV70486.1| 60S ribosomal protein L11 [Aphanomyces astaci]) HSP 1 Score: 280.411 bits (716), Expect = 1.325e-93 Identity = 129/172 (75.00%), Postives = 154/172 (89.53%), Query Frame = 0
Query: 53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
M++ KNN MRE+ VEKL++NCCVGESGD+LTRAA+VLEQL+GQ P+YSKARYTVR+FGIRRNEKIS HVT+RG+KA EILDRGLKVKEYELKK+NFS GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRKL+ RVGAPHR+ ++DA++WF K+EG+++
Sbjct: 1 MSNDKNNIMREIKVEKLVINCCVGESGDKLTRAARVLEQLTGQKPLYSKARYTVRTFGIRRNEKISCHVTVRGEKALEILDRGLKVKEYELKKRNFSDTGNFGFGIEEHIDLGIKYDPSTGIYGMDFFVVLTRAGMRVARRKLRQTRVGAPHRLRKQDAMNWFTTKYEGLIM 172
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|673029694|ref|XP_008868808.1| (60S ribosomal protein L11 [Aphanomyces invadans] >gi|574475203|gb|ETW02203.1| 60S ribosomal protein L11 [Aphanomyces invadans]) HSP 1 Score: 280.026 bits (715), Expect = 1.762e-93 Identity = 129/172 (75.00%), Postives = 154/172 (89.53%), Query Frame = 0
Query: 53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
M++ KNN MRE+ VEKL++NCCVGESGD+LTRAA+VLEQL+GQ P+YSKARYTVR+FGIRRNEKIS HVT+RG+KA EILDRGLKVKEYELKK+NFS GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRKL+ RVGAPHR+ ++DA++WF K+EG+++
Sbjct: 1 MSNDKNNVMREIKVEKLVINCCVGESGDKLTRAARVLEQLTGQKPLYSKARYTVRTFGIRRNEKISCHVTVRGEKALEILDRGLKVKEYELKKRNFSDTGNFGFGIEEHIDLGIKYDPSTGIYGMDFFVVLTRAGMRVSRRKLRQTRVGAPHRLRKQDAMNWFTTKYEGLIM 172
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|635365675|emb|CCI45988.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 278.87 bits (712), Expect = 5.782e-93 Identity = 130/169 (76.92%), Postives = 150/169 (88.76%), Query Frame = 0
Query: 56 KKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
K NN MRE+ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVRSFGIRRNEKIS HVT+RG+ A+EILDRGLKVKEYELK+KNFS GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RK++ R+GAPHR+ + DAI+WFQ K+EGIVL
Sbjct: 6 KSNNAMREIKVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRSFGIRRNEKISCHVTVRGEMASEILDRGLKVKEYELKRKNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLSRPGARVSHRKIQQSRIGAPHRLRKDDAINWFQTKYEGIVL 174
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|953498704|emb|CEG39754.1| (60s ribosomal protein l11 [Plasmopara halstedii]) HSP 1 Score: 278.87 bits (712), Expect = 5.798e-93 Identity = 132/171 (77.19%), Postives = 150/171 (87.72%), Query Frame = 0
Query: 54 ADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
DK NN MRE+ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+ A EILDRGLKVKEYEL +KNFS+ GNFGFGI EHIDLG+KYDPSTGIYGMDFYVVL R G RV RRK++ RVG PHR+T+ DAI WFQ K+EGIVL
Sbjct: 3 GDKSNNVMREIHVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTVRGELAQEILDRGLKVKEYELLRKNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLKRPGARVARRKIQQSRVGHPHRLTKDDAIKWFQAKYEGIVL 173
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|669157778|ref|XP_008614451.1| (60S ribosomal protein L11 [Saprolegnia diclina VS20] >gi|813149489|ref|XP_012200391.1| 60S ribosomal protein L11 [Saprolegnia parasitica CBS 223.65] >gi|530733807|gb|EQC32049.1| 60S ribosomal protein L11 [Saprolegnia diclina VS20] >gi|641534910|gb|KDO28840.1| 60S ribosomal protein L11 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 276.944 bits (707), Expect = 2.814e-92 Identity = 128/172 (74.42%), Postives = 152/172 (88.37%), Query Frame = 0
Query: 53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
M+ N M+E+ VEKL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+KA EILDRGLKVKEYELKK+NFS GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRKL+ RVGAPHR+ ++DA++WF QK+EG+++
Sbjct: 1 MSKDSQNVMKEIKVEKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTVRGEKALEILDRGLKVKEYELKKRNFSDTGNFGFGIDEHIDLGIKYDPSTGIYGMDFFVVLTRPGMRVARRKLRQTRVGAPHRLRKQDAMNWFTQKYEGLIM 172 The following BLAST results are available for this feature:
BLAST of EWM29788.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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