EWM29788.1, cds829 (CDS) Nannochloropsis gaditana

Overview
NameEWM29788.1
Unique Namecds829
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:518876..519070 -
Alignment locationCM002456.1:518148..518415 -
Alignment locationCM002456.1:517821..518024 -
Alignment locationCM002456.1:517712..517722 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29788.1
Product60s ribosomal protein l11
Orig transcript idgnl|cribi|Naga_100017g18.286.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:518876..519070 -
CM002456.1supercontigCM002456.1:518148..518415 -
CM002456.1supercontigCM002456.1:517821..518024 -
CM002456.1supercontigCM002456.1:517712..517722 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020929Ribosomal_L5_CS
IPR022803Ribosomal_L5_domain
IPR002132Ribosomal_L5
Homology
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|585112369|gb|EWM29788.1| (60s ribosomal protein l11 [Nannochloropsis gaditana])

HSP 1 Score: 466.848 bits (1200), Expect = 1.335e-166
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MCHCAWKDKGAVSRLDAVPRTASRGFALRRDPCFYFFSQSHSLYLRSTWLGTMADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 225
            MCHCAWKDKGAVSRLDAVPRTASRGFALRRDPCFYFFSQSHSLYLRSTWLGTMADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG
Sbjct:    1 MCHCAWKDKGAVSRLDAVPRTASRGFALRRDPCFYFFSQSHSLYLRSTWLGTMADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 225          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|1127419563|gb|OLL23214.1| (60S ribosomal protein L11 [Neolecta irregularis DAH-3])

HSP 1 Score: 284.263 bits (726), Expect = 5.598e-95
Identity = 131/169 (77.51%), Postives = 150/169 (88.76%), Query Frame = 0
Query:   56 KKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
            K NNPMREL +EKL+LN CVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVR+FGIRRNEKI+VHVT+RG KA EIL+RGLKVKEYEL+K+NFS+ GNFGFGI EHIDL +KYDPS GIYGMDFYVV+GRKG+RVGRRK    RVGAPHRV + + + WF+ K++ +VL
Sbjct:   10 KLNNPMRELKIEKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGIQEHIDLNIKYDPSIGIYGMDFYVVMGRKGYRVGRRKRATSRVGAPHRVNKNETVSWFKNKYDAVVL 178          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|675206245|ref|XP_008912007.1| (60S ribosomal protein L11 [Phytophthora parasitica INRA-310] >gi|566014312|gb|ETI37223.1| 60S ribosomal protein L11 [Phytophthora parasitica P1569] >gi|567951752|gb|ETK77445.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|567980429|gb|ETL30892.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|568009937|gb|ETL84131.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|568039838|gb|ETM37312.1| 60S ribosomal protein L11 [Phytophthora parasitica] >gi|568087925|gb|ETN02792.1| 60S ribosomal protein L11 [Phytophthora parasitica INRA-310] >gi|570318018|gb|ETO65966.1| 60S ribosomal protein L11 [Phytophthora parasitica P1976] >gi|570941819|gb|ETP07076.1| 60S ribosomal protein L11 [Phytophthora parasitica CJ01A1] >gi|570972211|gb|ETP35169.1| 60S ribosomal protein L11 [Phytophthora parasitica P10297] >gi|970645733|gb|KUF86116.1| 60S ribosomal protein L11-2 [Phytophthora nicotianae])

HSP 1 Score: 282.722 bits (722), Expect = 1.988e-94
Identity = 132/171 (77.19%), Postives = 152/171 (88.89%), Query Frame = 0
Query:   54 ADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
             DK NNPMR++ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+ A EILDRGLKVKEYEL +KNFS+ GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRK++  RVG PHR+T+ DAI+WFQ KFEGIVL
Sbjct:    3 GDKSNNPMRDIHVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTIRGELAQEILDRGLKVKEYELLRKNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLKRPGARVARRKMQQSRVGHPHRLTKDDAINWFQTKFEGIVL 173          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|1214699640|gb|OWZ12395.1| (60S ribosomal protein L11 [Phytophthora megakarya])

HSP 1 Score: 281.567 bits (719), Expect = 6.128e-94
Identity = 132/171 (77.19%), Postives = 151/171 (88.30%), Query Frame = 0
Query:   54 ADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
             DK NN MRE+ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+ A EILDRGLKVKEYEL +KNFS+ GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRK++  RVG PHR+T+ DAI+WFQ KFEGIVL
Sbjct:    9 GDKSNNAMREIHVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTIRGELAQEILDRGLKVKEYELLRKNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLKRPGARVARRKMQQSRVGHPHRLTKDDAINWFQSKFEGIVL 179          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|298707505|emb|CBJ30107.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 281.182 bits (718), Expect = 6.165e-94
Identity = 133/173 (76.88%), Postives = 152/173 (87.86%), Query Frame = 0
Query:   53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVLG 225
            MA+ K NPMR+L V+KL+LNC VGESGDRLTRAAKVLEQL+GQ+PVYSKARYTVRSFGIRRNEKI+ HVT+RGDKA EIL+RGLKVKEYELK+KNFS  G+FGFGI EHIDLGLKYDPSTGIYGMDF+VVL R G+RV +RK K  ++G  H+VT+ DA+ WFQ KFEGIV G
Sbjct:    1 MAEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|698814338|ref|XP_009840198.1| (60S ribosomal protein L11 [Aphanomyces astaci] >gi|574104959|gb|ETV70486.1| 60S ribosomal protein L11 [Aphanomyces astaci])

HSP 1 Score: 280.411 bits (716), Expect = 1.325e-93
Identity = 129/172 (75.00%), Postives = 154/172 (89.53%), Query Frame = 0
Query:   53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
            M++ KNN MRE+ VEKL++NCCVGESGD+LTRAA+VLEQL+GQ P+YSKARYTVR+FGIRRNEKIS HVT+RG+KA EILDRGLKVKEYELKK+NFS  GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRKL+  RVGAPHR+ ++DA++WF  K+EG+++
Sbjct:    1 MSNDKNNIMREIKVEKLVINCCVGESGDKLTRAARVLEQLTGQKPLYSKARYTVRTFGIRRNEKISCHVTVRGEKALEILDRGLKVKEYELKKRNFSDTGNFGFGIEEHIDLGIKYDPSTGIYGMDFFVVLTRAGMRVARRKLRQTRVGAPHRLRKQDAMNWFTTKYEGLIM 172          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|673029694|ref|XP_008868808.1| (60S ribosomal protein L11 [Aphanomyces invadans] >gi|574475203|gb|ETW02203.1| 60S ribosomal protein L11 [Aphanomyces invadans])

HSP 1 Score: 280.026 bits (715), Expect = 1.762e-93
Identity = 129/172 (75.00%), Postives = 154/172 (89.53%), Query Frame = 0
Query:   53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
            M++ KNN MRE+ VEKL++NCCVGESGD+LTRAA+VLEQL+GQ P+YSKARYTVR+FGIRRNEKIS HVT+RG+KA EILDRGLKVKEYELKK+NFS  GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRKL+  RVGAPHR+ ++DA++WF  K+EG+++
Sbjct:    1 MSNDKNNVMREIKVEKLVINCCVGESGDKLTRAARVLEQLTGQKPLYSKARYTVRTFGIRRNEKISCHVTVRGEKALEILDRGLKVKEYELKKRNFSDTGNFGFGIEEHIDLGIKYDPSTGIYGMDFFVVLTRAGMRVSRRKLRQTRVGAPHRLRKQDAMNWFTTKYEGLIM 172          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|635365675|emb|CCI45988.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 278.87 bits (712), Expect = 5.782e-93
Identity = 130/169 (76.92%), Postives = 150/169 (88.76%), Query Frame = 0
Query:   56 KKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
            K NN MRE+ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVRSFGIRRNEKIS HVT+RG+ A+EILDRGLKVKEYELK+KNFS  GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV  RK++  R+GAPHR+ + DAI+WFQ K+EGIVL
Sbjct:    6 KSNNAMREIKVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRSFGIRRNEKISCHVTVRGEMASEILDRGLKVKEYELKRKNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLSRPGARVSHRKIQQSRIGAPHRLRKDDAINWFQTKYEGIVL 174          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|953498704|emb|CEG39754.1| (60s ribosomal protein l11 [Plasmopara halstedii])

HSP 1 Score: 278.87 bits (712), Expect = 5.798e-93
Identity = 132/171 (77.19%), Postives = 150/171 (87.72%), Query Frame = 0
Query:   54 ADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
             DK NN MRE+ V+KL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+ A EILDRGLKVKEYEL +KNFS+ GNFGFGI EHIDLG+KYDPSTGIYGMDFYVVL R G RV RRK++  RVG PHR+T+ DAI WFQ K+EGIVL
Sbjct:    3 GDKSNNVMREIHVDKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTVRGELAQEILDRGLKVKEYELLRKNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLKRPGARVARRKIQQSRVGHPHRLTKDDAIKWFQAKYEGIVL 173          
BLAST of EWM29788.1 vs. NCBI_GenBank
Match: gi|669157778|ref|XP_008614451.1| (60S ribosomal protein L11 [Saprolegnia diclina VS20] >gi|813149489|ref|XP_012200391.1| 60S ribosomal protein L11 [Saprolegnia parasitica CBS 223.65] >gi|530733807|gb|EQC32049.1| 60S ribosomal protein L11 [Saprolegnia diclina VS20] >gi|641534910|gb|KDO28840.1| 60S ribosomal protein L11 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 276.944 bits (707), Expect = 2.814e-92
Identity = 128/172 (74.42%), Postives = 152/172 (88.37%), Query Frame = 0
Query:   53 MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKKKNFSQNGNFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGAPHRVTQKDAIDWFQQKFEGIVL 224
            M+    N M+E+ VEKL++NCCVGESGD+LTRAA+VLEQL+GQ PVYSKARYTVR+FGIRRNEKIS HVT+RG+KA EILDRGLKVKEYELKK+NFS  GNFGFGI EHIDLG+KYDPSTGIYGMDF+VVL R G RV RRKL+  RVGAPHR+ ++DA++WF QK+EG+++
Sbjct:    1 MSKDSQNVMKEIKVEKLVINCCVGESGDKLTRAARVLEQLTGQKPVYSKARYTVRTFGIRRNEKISCHVTVRGEKALEILDRGLKVKEYELKKRNFSDTGNFGFGIDEHIDLGIKYDPSTGIYGMDFFVVLTRPGMRVARRKLRQTRVGAPHRLRKQDAMNWFTQKYEGLIM 172          
The following BLAST results are available for this feature:
BLAST of EWM29788.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112369|gb|EWM29788.1|1.335e-166100.0060s ribosomal protein l11 [Nannochloropsis gaditan... [more]
gi|1127419563|gb|OLL23214.1|5.598e-9577.5160S ribosomal protein L11 [Neolecta irregularis DA... [more]
gi|675206245|ref|XP_008912007.1|1.988e-9477.1960S ribosomal protein L11 [Phytophthora parasitica... [more]
gi|1214699640|gb|OWZ12395.1|6.128e-9477.1960S ribosomal protein L11 [Phytophthora megakarya][more]
gi|298707505|emb|CBJ30107.1|6.165e-9476.88conserved unknown protein [Ectocarpus siliculosus][more]
gi|698814338|ref|XP_009840198.1|1.325e-9375.0060S ribosomal protein L11 [Aphanomyces astaci] >gi... [more]
gi|673029694|ref|XP_008868808.1|1.762e-9375.0060S ribosomal protein L11 [Aphanomyces invadans] >... [more]
gi|635365675|emb|CCI45988.1|5.782e-9376.92unnamed protein product [Albugo candida][more]
gi|953498704|emb|CEG39754.1|5.798e-9377.1960s ribosomal protein l11 [Plasmopara halstedii][more]
gi|669157778|ref|XP_008614451.1|2.814e-9274.4260S ribosomal protein L11 [Saprolegnia diclina VS2... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna829rna829Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications