EWM22394.1, cds8270 (CDS) Nannochloropsis gaditana

Overview
NameEWM22394.1
Unique Namecds8270
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:302263..302606 +
Alignment locationKK037248.1:302726..302984 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22394.1
Productcyclophilin
Orig transcript idgnl|cribi|Naga_100067g11.2682.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:302263..302606 +
KK037248.1supercontigKK037248.1:302726..302984 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR020892Cyclophilin-type_PPIase_CS
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|585102898|gb|EWM22394.1| (cyclophilin [Nannochloropsis gaditana])

HSP 1 Score: 414.846 bits (1065), Expect = 1.023e-146
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MTHRILPHSSLGDPLHSVVQASINLEIMPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            MTHRILPHSSLGDPLHSVVQASINLEIMPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS
Sbjct:    1 MTHRILPHSSLGDPLHSVVQASINLEIMPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|760450069|ref|XP_011402103.1| (Peptidyl-prolyl cis-trans isomerase CYP18-4 [Auxenochlorella protothecoides] >gi|675356614|gb|KFM29054.1| Peptidyl-prolyl cis-trans isomerase CYP18-4 [Auxenochlorella protothecoides])

HSP 1 Score: 300.827 bits (769), Expect = 4.156e-102
Identity = 147/173 (84.97%), Postives = 153/173 (88.44%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            M  PVVFFDV  GS   LGRIEM LRADVVPKTAENFRALCTGEKG GRSGKPLHFKGSTFHRVIP FMCQGGDFTAGNGTGGESIYG KF DENF L HTGPGILSMANAGPNTNGSQFFLCTA TAWLDGKHVVFGSVTKG+DVVK +ESYGS +GAT++ I I DCGQL+
Sbjct:    1 MSKPVVFFDVSAGS-TPLGRIEMELRADVVPKTAENFRALCTGEKGTGRSGKPLHFKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFKLTHTGPGILSMANAGPNTNGSQFFLCTAATAWLDGKHVVFGSVTKGLDVVKKIESYGSGSGATKQVIRITDCGQLA 172          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|545355360|ref|XP_005643480.1| (cyclophilin-like protein [Coccomyxa subellipsoidea C-169] >gi|384245442|gb|EIE18936.1| cyclophilin-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 298.516 bits (763), Expect = 3.486e-101
Identity = 145/173 (83.82%), Postives = 153/173 (88.44%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            M NPVVFFDV  G G  +GRIEMTLR DV P+TAENFRALCTGEKG GR GKPLHFKGS+FHRVIPDFMCQGGDFTAGNGTGGESIYG KF DENFTLKHTGPGILSMANAG NTNGSQFFLCTA+TAWLDGKHVVFGSVTKGMDVVK +ES+GS +G T + I I DCGQLS
Sbjct:    1 MSNPVVFFDVSAG-GAPVGRIEMTLRNDVTPRTAENFRALCTGEKGVGRMGKPLHFKGSSFHRVIPDFMCQGGDFTAGNGTGGESIYGAKFADENFTLKHTGPGILSMANAGANTNGSQFFLCTAKTAWLDGKHVVFGSVTKGMDVVKKIESFGSGSGKTSKPITITDCGQLS 172          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|159484660|ref|XP_001700372.1| (peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Chlamydomonas reinhardtii] >gi|158272413|gb|EDO98214.1| peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Chlamydomonas reinhardtii])

HSP 1 Score: 296.204 bits (757), Expect = 3.157e-100
Identity = 142/173 (82.08%), Postives = 150/173 (86.71%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            MPNP+VFFD+ T  G  +GRIEM L AD VPKTAENFRALCTGEKG GRSGKPLHFKGSTFHRVIP+FMCQGGDFT GNGTGGESIYG KFPDENF  +HTGPG+LSMANAGPNTNGSQFFLCT ETAWLDGKHVVFG V KGMDVVK VE YGS +G TR  I IADCGQL+
Sbjct:    1 MPNPIVFFDI-TADGAPVGRIEMELYADDVPKTAENFRALCTGEKGVGRSGKPLHFKGSTFHRVIPNFMCQGGDFTRGNGTGGESIYGEKFPDENFKHRHTGPGVLSMANAGPNTNGSQFFLCTVETAWLDGKHVVFGKVCKGMDVVKKVEGYGSSSGKTRATIAIADCGQLA 172          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|551573511|ref|XP_005772559.1| (peptidyl-prolyl cis-trans isomerase putative cyclophilin protein [Emiliania huxleyi CCMP1516] >gi|485624005|gb|EOD20130.1| peptidyl-prolyl cis-trans isomerase putative cyclophilin protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 295.049 bits (754), Expect = 8.749e-100
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            M NPVVFFD+  G G   GRIEMTLRADVVPKTAENFRALCTGEKG G+SGKPLHFKGS+FHRVI +FMCQGGDFTAGNGTGGESIYG KF DENF LKHTGPGILSMANAGP TNGSQFFLCT +T WLDGKHVVFGSVTKGM+VVKA+E+ GS++G T +K+VIADCGQ+S
Sbjct:    1 MSNPVVFFDMTIG-GAPAGRIEMTLRADVVPKTAENFRALCTGEKGQGKSGKPLHFKGSSFHRVITNFMCQGGDFTAGNGTGGESIYGAKFADENFQLKHTGPGILSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEVVKAIEAVGSQSGQTAKKVVIADCGQIS 172          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|2959712|gb|AAC05639.1| (cyclophilin 1 [Chlamydomonas reinhardtii])

HSP 1 Score: 292.352 bits (747), Expect = 9.864e-99
Identity = 140/173 (80.92%), Postives = 148/173 (85.55%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            MPNP+VFFD+ T  G  +GRIEM L AD VPKTAENFRALCTGEKG GRSGKPLHFKGSTFHRVIP+FMCQGGDFT GNGTGGESIYG KFPDENF  +HTGPG+LSMANAGPNTNGSQFFLCT ETAWLDGKHVVFG V KGMDVVK VE YGS +G TR    IADC QL+
Sbjct:    1 MPNPIVFFDI-TADGAPVGRIEMELYADDVPKTAENFRALCTGEKGVGRSGKPLHFKGSTFHRVIPNFMCQGGDFTRGNGTGGESIYGEKFPDENFKHRHTGPGVLSMANAGPNTNGSQFFLCTVETAWLDGKHVVFGKVCKGMDVVKKVEGYGSSSGKTRATFAIADCAQLA 172          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|551611864|ref|XP_005787000.1| (peptidyl-prolyl isomerase [Emiliania huxleyi CCMP1516] >gi|485640324|gb|EOD34571.1| peptidyl-prolyl isomerase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 291.197 bits (744), Expect = 2.764e-98
Identity = 141/173 (81.50%), Postives = 153/173 (88.44%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            M  PVVFFD+  G G   GRIEMTLRADVVPKTAENFRALCTGEKG G+SGKPLHFKGS FHRVI +FMCQGGDFTAGNGTGGESIYG KF DENF LKHTGPGILSMANAGP TNGSQFFLCT +T WLDGKHVVFGSVTKGM+VVKA+E+ GS++G T +K+VIADCGQ+S
Sbjct:    1 MSCPVVFFDMTIG-GAPAGRIEMTLRADVVPKTAENFRALCTGEKGMGKSGKPLHFKGSAFHRVITNFMCQGGDFTAGNGTGGESIYGAKFADENFQLKHTGPGILSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEVVKAIEAVGSQSGQTAKKVVIADCGQIS 172          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|1207975173|ref|XP_021378464.1| (peptidyl-prolyl cis-trans isomerase 1-like [Mizuhopecten yessoensis] >gi|1205887387|gb|OWF38368.1| Peptidyl-prolyl cis-trans isomerase 1 [Mizuhopecten yessoensis])

HSP 1 Score: 289.271 bits (739), Expect = 1.413e-97
Identity = 140/172 (81.40%), Postives = 150/172 (87.21%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQL 199
            M NP VFFD+  G G + GRIEM LRADVVPKT+ENFRALCTGEKG G+SGKPLHFKGS+FHRVI DFMCQGGDFT GNGTGGESIYG KF DENFTLKHTGPGILSMANAGP TNGSQFFLCT +TAWLDGKHVVFGSVTKGM+VVKA+E  GS  G T + +VIADCGQL
Sbjct:    1 MSNPKVFFDMTIG-GASAGRIEMELRADVVPKTSENFRALCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFTLKHTGPGILSMANAGPGTNGSQFFLCTVKTAWLDGKHVVFGSVTKGMEVVKAIEKVGSTGGTTSKPVVIADCGQL 171          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|926781812|ref|XP_013899380.1| (peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Monoraphidium neglectum] >gi|761969336|gb|KIZ00361.1| peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Monoraphidium neglectum])

HSP 1 Score: 288.886 bits (738), Expect = 2.249e-97
Identity = 139/175 (79.43%), Postives = 153/175 (87.43%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTK--GMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            M NPVV+FD++   G  LGRIEM LRADVVPKTAENFRALCTGEKG GRSGKPLHFKGSTFHRVI DFMCQGGDFTAGNGTGGESIYG+KF DENFTLKHTGPG+LSMANAGPNTNGSQFFLCT +T WLDGKHVVFG+V     + VV+ +E+YGS +G T ++IVIADCGQLS
Sbjct:    1 MSNPVVYFDIEA-DGQPLGRIEMLLRADVVPKTAENFRALCTGEKGVGRSGKPLHFKGSTFHRVINDFMCQGGDFTAGNGTGGESIYGSKFADENFTLKHTGPGVLSMANAGPNTNGSQFFLCTVKTGWLDGKHVVFGNVRDDASLAVVRKIEAYGSSSGRTSKRIVIADCGQLS 174          
BLAST of EWM22394.1 vs. NCBI_GenBank
Match: gi|1188278481|gb|OSS47369.1| (hypothetical protein B5807_07531 [Epicoccum nigrum])

HSP 1 Score: 288.115 bits (736), Expect = 5.215e-97
Identity = 138/173 (79.77%), Postives = 150/173 (86.71%), Query Frame = 0
Query:   28 MPNPVVFFDVQTGSGNNLGRIEMTLRADVVPKTAENFRALCTGEKGAGRSGKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFPDENFTLKHTGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAVESYGSRTGATREKIVIADCGQLS 200
            M    VFFDV   +G+ LGRI M LR DVVP+TAENFRALCTGEKG GRSGKPLHFKG++FHRVIP FM QGGDFTAGNGTGGESIYG KF DENFTLKHTGPGILSMANAGPNTNGSQFF+CT +TAWLDGKHVVFG V +GMDVV+ VESYGS +GAT+ KI IADCGQL+
Sbjct:    1 MSKSQVFFDV-AANGSPLGRIVMELRGDVVPQTAENFRALCTGEKGTGRSGKPLHFKGASFHRVIPQFMLQGGDFTAGNGTGGESIYGEKFKDENFTLKHTGPGILSMANAGPNTNGSQFFICTEKTAWLDGKHVVFGQVVQGMDVVQKVESYGSSSGATKAKITIADCGQLA 172          
The following BLAST results are available for this feature:
BLAST of EWM22394.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102898|gb|EWM22394.1|1.023e-146100.00cyclophilin [Nannochloropsis gaditana][more]
gi|760450069|ref|XP_011402103.1|4.156e-10284.97Peptidyl-prolyl cis-trans isomerase CYP18-4 [Auxen... [more]
gi|545355360|ref|XP_005643480.1|3.486e-10183.82cyclophilin-like protein [Coccomyxa subellipsoidea... [more]
gi|159484660|ref|XP_001700372.1|3.157e-10082.08peptidyl-prolyl cis-trans isomerase, cyclophilin-t... [more]
gi|551573511|ref|XP_005772559.1|8.749e-10082.08peptidyl-prolyl cis-trans isomerase putative cyclo... [more]
gi|2959712|gb|AAC05639.1|9.864e-9980.92cyclophilin 1 [Chlamydomonas reinhardtii][more]
gi|551611864|ref|XP_005787000.1|2.764e-9881.50peptidyl-prolyl isomerase [Emiliania huxleyi CCMP1... [more]
gi|1207975173|ref|XP_021378464.1|1.413e-9781.40peptidyl-prolyl cis-trans isomerase 1-like [Mizuho... [more]
gi|926781812|ref|XP_013899380.1|2.249e-9779.43peptidyl-prolyl cis-trans isomerase, cyclophilin-t... [more]
gi|1188278481|gb|OSS47369.1|5.215e-9779.77hypothetical protein B5807_07531 [Epicoccum nigrum... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8294rna8294Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications