EWM22425.1, cds8244 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22425.1
Unique Name	cds8244
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037248.1:232091..232109 +
Alignment location	KK037248.1:232224..232279 +
Alignment location	KK037248.1:232378..232447 +
Alignment location	KK037248.1:232585..232765 +
Alignment location	KK037248.1:232921..232927 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22425.1
Product	phd finger-like domain-containing protein 5a
Orig transcript id	gnl\|cribi\|Naga_100011g80.3425.mrna
Gene	Rds3
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:232091..232109 +
KK037248.1	supercontig	KK037248.1:232224..232279 +
KK037248.1	supercontig	KK037248.1:232378..232447 +
KK037248.1	supercontig	KK037248.1:232585..232765 +
KK037248.1	supercontig	KK037248.1:232921..232927 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR005345	PHF5

Homology

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|585102931|gb|EWM22425.1| (phd finger-like domain-containing protein 5a [Nannochloropsis gaditana])

HSP 1 Score: 223.787 bits (569), Expect = 4.912e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR
Sbjct:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|298713808|emb|CBJ27180.1| (U2 snRNP protein Rds3p [Ectocarpus siliculosus])

HSP 1 Score: 213.001 bits (541), Expect = 8.889e-70
Identity = 102/110 (92.73%), Postives = 107/110 (97.27%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DLVMCRKQPGIAIGRLCEKCDGKCV+CDSYVRP TLVRICDECNYGS+EGRC ICGGPGISDAYYCRECTQ+EKDRDGCPKIVNLG+SKTDLFYERKKYGFK+R
Sbjct:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|848892324|ref|XP_012846246.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Erythranthe guttata] >gi|604318664|gb|EYU30156.1| hypothetical protein MIMGU_mgv1a016714mg [Erythranthe guttata])

HSP 1 Score: 211.075 bits (536), Expect = 5.621e-69
Identity = 99/110 (90.00%), Postives = 108/110 (98.18%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DL+MCRKQPGIAIGRLCEKCDGKCVICDSYVRP TLVR+CDECNYGS++GRCVICGGPGISDAYYC+ECTQ+EKDRDGCPKIVNLG++KTDLFYERKKYGFK+R
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGPGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|674935611|emb|CDX97861.1| (BnaC04g40780D [Brassica napus])

HSP 1 Score: 213.001 bits (541), Expect = 5.814e-69
Identity = 98/110 (89.09%), Postives = 107/110 (97.27%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DL+MCRKQPGIAIGRLCEKCDGKCV+CDSYVRP TLVRICDECNYGS++GRCVICGG GISDAYYC+ECTQ+EKDRDGCPKIVNLG++KTDLFYERKKYGFK+R
Sbjct:   62 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 171

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|970631189|gb|KUF77883.1| (Pre-mRNA-splicing factor ini1 [Phytophthora nicotianae])

HSP 1 Score: 212.231 bits (539), Expect = 8.727e-69
Identity = 102/110 (92.73%), Postives = 106/110 (96.36%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DLVMCRKQPG+AIGRLCEK DGKCVICDSYVRP TLVRICDECNYGSY+GRCVICGGPGISDAYYCRECTQ EKDRDGCPKIVNLG+SKTDLFYERKKYGFK+R
Sbjct:   48 MAKHHPDLVMCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGISDAYYCRECTQLEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 157

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|922467047|ref|XP_013633804.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Brassica oleracea var. oleracea])

HSP 1 Score: 211.846 bits (538), Expect = 1.111e-68
Identity = 98/110 (89.09%), Postives = 107/110 (97.27%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DL+MCRKQPGIAIGRLCEKCDGKCV+CDSYVRP TLVRICDECNYGS++GRCVICGG GISDAYYC+ECTQ+EKDRDGCPKIVNLG++KTDLFYERKKYGFK+R
Sbjct:   48 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 157

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|167525882|ref|XP_001747275.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774110|gb|EDQ87742.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 209.92 bits (533), Expect = 1.199e-68
Identity = 99/110 (90.00%), Postives = 107/110 (97.27%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DL+MCRKQPG+AIGRLCEKCDGKCV+CDSYVRPSTLVRICDECNYGSY+GRCVICGGPG+SDAYYC+ECT EEKDRDGCPKIVNLGA++TDLFYERKKYGFK R
Sbjct:    1 MAKHHPDLIMCRKQPGVAIGRLCEKCDGKCVVCDSYVRPSTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIEEKDRDGCPKIVNLGAARTDLFYERKKYGFKPR 110

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|551544352|ref|XP_005760258.1| (hypothetical protein EMIHUDRAFT_446407 [Emiliania huxleyi CCMP1516] >gi|551624391|ref|XP_005792434.1| hypothetical protein EMIHUDRAFT_439789 [Emiliania huxleyi CCMP1516] >gi|485608599|gb|EOD07829.1| hypothetical protein EMIHUDRAFT_446407 [Emiliania huxleyi CCMP1516] >gi|485646575|gb|EOD40005.1| hypothetical protein EMIHUDRAFT_439789 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 209.92 bits (533), Expect = 1.595e-68
Identity = 97/110 (88.18%), Postives = 108/110 (98.18%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DL+MCRKQPGI++GRLCEKCDGKC ICDSYVRP+TLVRICDECNYGS++GRC+ICGGPGISDAYYC+ECTQ+EKDRDGCPKIVNLG+SKTDLFYERKKYGFK+R
Sbjct:    1 MAKHHPDLIMCRKQPGISVGRLCEKCDGKCPICDSYVRPNTLVRICDECNYGSFQGRCIICGGPGISDAYYCKECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|196013456|ref|XP_002116589.1| (conserved hypothetical protein [Trichoplax adhaerens] >gi|190580865|gb|EDV20945.1| conserved hypothetical protein [Trichoplax adhaerens])

HSP 1 Score: 209.534 bits (532), Expect = 1.760e-68
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DL+MCRKQPG+AIGRLCEKCDGKCVICDSYVRP TLVRICDECNYGSY+GRCVICGGPGISDAYYC+ECT +EKDRDGCPKIVNLG+SKTDLFYERKKYGFK+R
Sbjct:    1 MAKHHPDLIMCRKQPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGISDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]

BLAST of EWM22425.1 vs. NCBI_GenBank
Match: gi|156357018|ref|XP_001624022.1| (predicted protein [Nematostella vectensis] >gi|1191026793|ref|XP_020908569.1| PHD finger-like domain-containing protein 5A [Exaiptasia pallida] >gi|1191066622|ref|XP_020911806.1| PHD finger-like domain-containing protein 5A [Exaiptasia pallida] >gi|156210772|gb|EDO31922.1| predicted protein [Nematostella vectensis] >gi|999966904|gb|KXJ06078.1| PHD finger-like domain-containing protein 5A [Exaiptasia pallida] >gi|999968823|gb|KXJ07997.1| PHD finger-like domain-containing protein 5A [Exaiptasia pallida])

HSP 1 Score: 209.534 bits (532), Expect = 1.819e-68
Identity = 99/110 (90.00%), Postives = 107/110 (97.27%), Query Frame = 0

Query:    1 MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
            MAKHH DL+MCRKQPG+AIGRLCEKCDGKCVICDSYVRP TLVRICDECNYGSY+GRCVICGGPG+SDAYYC+ECT +EKDRDGCPKIVNLG+SKTDLFYERKKYGFK+R
Sbjct:    1 MAKHHPDLIMCRKQPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTVQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

The following BLAST results are available for this feature:

BLAST of EWM22425.1 vs. NCBI_GenBank

BLAST of EWM22425.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585102931\|gb\|EWM22425.1\|	4.912e-74	100.00	phd finger-like domain-containing protein 5a [Nann...	[more]
gi\|298713808\|emb\|CBJ27180.1\|	8.889e-70	92.73	U2 snRNP protein Rds3p [Ectocarpus siliculosus]	[more]
gi\|848892324\|ref\|XP_012846246.1\|	5.621e-69	90.00	PREDICTED: PHD finger-like domain-containing prote...	[more]
gi\|674935611\|emb\|CDX97861.1\|	5.814e-69	89.09	BnaC04g40780D [Brassica napus]	[more]
gi\|970631189\|gb\|KUF77883.1\|	8.727e-69	92.73	Pre-mRNA-splicing factor ini1 [Phytophthora nicoti...	[more]
gi\|922467047\|ref\|XP_013633804.1\|	1.111e-68	89.09	PREDICTED: PHD finger-like domain-containing prote...	[more]
gi\|167525882\|ref\|XP_001747275.1\|	1.199e-68	90.00	hypothetical protein [Monosiga brevicollis MX1] >g...	[more]
gi\|551544352\|ref\|XP_005760258.1\|	1.595e-68	88.18	hypothetical protein EMIHUDRAFT_446407 [Emiliania ...	[more]
gi\|196013456\|ref\|XP_002116589.1\|	1.760e-68	90.91	conserved hypothetical protein [Trichoplax adhaere...	[more]
gi\|156357018\|ref\|XP_001624022.1\|	1.819e-68	90.00	predicted protein [Nematostella vectensis] >gi\|119...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8268	rna8268	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications