EWM22419.1, cds8229 (CDS) Nannochloropsis gaditana

Overview
NameEWM22419.1
Unique Namecds8229
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:191843..194317 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22419.1
Productpx domain containing protein
Orig transcript idgnl|cribi|Naga_100011g63.3419.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:191843..194317 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0005515protein binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR001683Phox
Homology
BLAST of EWM22419.1 vs. NCBI_GenBank
Match: gi|585102925|gb|EWM22419.1| (px domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1645.56 bits (4260), Expect = 0.000e+0
Identity = 824/824 (100.00%), Postives = 824/824 (100.00%), Query Frame = 0
Query:    1 MLRTNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITRTVVPEESIVVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPSHDFLPPGEPLDIPPVHEQQRQRKAAAPHAQSPVAPPPVVPTPSGLPTRLAATTSVALGEEASGAPTTPPVALPAQSKPPVAALPRVEIRVPSRGPASRPRPKLGPSEDEVEHLKIERISSKREGQDPNKLQSVLEAALVEEERRSEGQLNGSLSTSLSSAGVGEPKDPLFELETSGRGASEMGSTTENKVAKGQATVPTATQDNETEGEGSGAENPAAPIQASESSSGDTLAEEGPDSDALSHDPSEPLAALALDTQELGEQENAEDGPGVTVEEPHSPVSAPPPVAPAPPALPSYEPPPSIPAAQPASVSLIISSTSSGVPSSTSHDPPPSTSAVSLAPASTLRSLSPPLPVIFPTSSPPTTTHPVRAVCEAEEMAAADVTSKISHLTDQRHATEDTLGGGASRVGKDEAIGAGPIDLTAPADVDAHTSQTSGVHSQSHDSPPSVVAHSHDHLSPRQLHHDSRLKTPPRLEKAKLEEEGDVAGGAETKEELVPPSPFEDYM 824
            MLRTNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITRTVVPEESIVVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPSHDFLPPGEPLDIPPVHEQQRQRKAAAPHAQSPVAPPPVVPTPSGLPTRLAATTSVALGEEASGAPTTPPVALPAQSKPPVAALPRVEIRVPSRGPASRPRPKLGPSEDEVEHLKIERISSKREGQDPNKLQSVLEAALVEEERRSEGQLNGSLSTSLSSAGVGEPKDPLFELETSGRGASEMGSTTENKVAKGQATVPTATQDNETEGEGSGAENPAAPIQASESSSGDTLAEEGPDSDALSHDPSEPLAALALDTQELGEQENAEDGPGVTVEEPHSPVSAPPPVAPAPPALPSYEPPPSIPAAQPASVSLIISSTSSGVPSSTSHDPPPSTSAVSLAPASTLRSLSPPLPVIFPTSSPPTTTHPVRAVCEAEEMAAADVTSKISHLTDQRHATEDTLGGGASRVGKDEAIGAGPIDLTAPADVDAHTSQTSGVHSQSHDSPPSVVAHSHDHLSPRQLHHDSRLKTPPRLEKAKLEEEGDVAGGAETKEELVPPSPFEDYM
Sbjct:    1 MLRTNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITRTVVPEESIVVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPSHDFLPPGEPLDIPPVHEQQRQRKAAAPHAQSPVAPPPVVPTPSGLPTRLAATTSVALGEEASGAPTTPPVALPAQSKPPVAALPRVEIRVPSRGPASRPRPKLGPSEDEVEHLKIERISSKREGQDPNKLQSVLEAALVEEERRSEGQLNGSLSTSLSSAGVGEPKDPLFELETSGRGASEMGSTTENKVAKGQATVPTATQDNETEGEGSGAENPAAPIQASESSSGDTLAEEGPDSDALSHDPSEPLAALALDTQELGEQENAEDGPGVTVEEPHSPVSAPPPVAPAPPALPSYEPPPSIPAAQPASVSLIISSTSSGVPSSTSHDPPPSTSAVSLAPASTLRSLSPPLPVIFPTSSPPTTTHPVRAVCEAEEMAAADVTSKISHLTDQRHATEDTLGGGASRVGKDEAIGAGPIDLTAPADVDAHTSQTSGVHSQSHDSPPSVVAHSHDHLSPRQLHHDSRLKTPPRLEKAKLEEEGDVAGGAETKEELVPPSPFEDYM 824          
BLAST of EWM22419.1 vs. NCBI_GenBank
Match: gi|553182844|ref|XP_005853793.1| (px domain containing protein [Nannochloropsis gaditana CCMP526] >gi|422295267|gb|EKU22566.1| px domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1642.86 bits (4253), Expect = 0.000e+0
Identity = 823/824 (99.88%), Postives = 823/824 (99.88%), Query Frame = 0
Query:    1 MLRTNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITRTVVPEESIVVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPSHDFLPPGEPLDIPPVHEQQRQRKAAAPHAQSPVAPPPVVPTPSGLPTRLAATTSVALGEEASGAPTTPPVALPAQSKPPVAALPRVEIRVPSRGPASRPRPKLGPSEDEVEHLKIERISSKREGQDPNKLQSVLEAALVEEERRSEGQLNGSLSTSLSSAGVGEPKDPLFELETSGRGASEMGSTTENKVAKGQATVPTATQDNETEGEGSGAENPAAPIQASESSSGDTLAEEGPDSDALSHDPSEPLAALALDTQELGEQENAEDGPGVTVEEPHSPVSAPPPVAPAPPALPSYEPPPSIPAAQPASVSLIISSTSSGVPSSTSHDPPPSTSAVSLAPASTLRSLSPPLPVIFPTSSPPTTTHPVRAVCEAEEMAAADVTSKISHLTDQRHATEDTLGGGASRVGKDEAIGAGPIDLTAPADVDAHTSQTSGVHSQSHDSPPSVVAHSHDHLSPRQLHHDSRLKTPPRLEKAKLEEEGDVAGGAETKEELVPPSPFEDYM 824
            MLRTNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITRTVVPEESIVVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPSHDFLPPGEPLDIPPVHEQQRQRKAAAPHAQSPVAPPPVVPTPSGLPTRLAATTSVALGEEASGAPTTPPVALPAQSKPPVAALPRVEIRVPSRGPASRPRPKLGPSEDEVEHLKIERISSKREGQDPNKLQSVLEAALVEEERRSEGQLNGSLSTSLSSAGVGEPKDPLFELETSGRGASEMGSTTENKVAKGQATVPTATQDNETEGEGSGAENPAAPIQASESSSGDTLAEEGPDSDALSHDPSEPLAALALDTQELGEQENAEDGPGVTVEEPHSPVSAPPPVAPAPPALPSYEPPPSIPAAQPASVSLIISSTSS VPSSTSHDPPPSTSAVSLAPASTLRSLSPPLPVIFPTSSPPTTTHPVRAVCEAEEMAAADVTSKISHLTDQRHATEDTLGGGASRVGKDEAIGAGPIDLTAPADVDAHTSQTSGVHSQSHDSPPSVVAHSHDHLSPRQLHHDSRLKTPPRLEKAKLEEEGDVAGGAETKEELVPPSPFEDYM
Sbjct:    1 MLRTNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITRTVVPEESIVVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPSHDFLPPGEPLDIPPVHEQQRQRKAAAPHAQSPVAPPPVVPTPSGLPTRLAATTSVALGEEASGAPTTPPVALPAQSKPPVAALPRVEIRVPSRGPASRPRPKLGPSEDEVEHLKIERISSKREGQDPNKLQSVLEAALVEEERRSEGQLNGSLSTSLSSAGVGEPKDPLFELETSGRGASEMGSTTENKVAKGQATVPTATQDNETEGEGSGAENPAAPIQASESSSGDTLAEEGPDSDALSHDPSEPLAALALDTQELGEQENAEDGPGVTVEEPHSPVSAPPPVAPAPPALPSYEPPPSIPAAQPASVSLIISSTSSSVPSSTSHDPPPSTSAVSLAPASTLRSLSPPLPVIFPTSSPPTTTHPVRAVCEAEEMAAADVTSKISHLTDQRHATEDTLGGGASRVGKDEAIGAGPIDLTAPADVDAHTSQTSGVHSQSHDSPPSVVAHSHDHLSPRQLHHDSRLKTPPRLEKAKLEEEGDVAGGAETKEELVPPSPFEDYM 824          
BLAST of EWM22419.1 vs. NCBI_GenBank
Match: gi|676389975|ref|XP_009038266.1| (hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens] >gi|323451151|gb|EGB07029.1| hypothetical protein AURANDRAFT_71905 [Aureococcus anophagefferens])

HSP 1 Score: 174.866 bits (442), Expect = 4.008e-41
Identity = 110/337 (32.64%), Postives = 167/337 (49.55%), Query Frame = 0
Query:    4 TNVLQGEVHRSWVWLSPAGAKHVIDLWHDTVTGVRSVAVGMEEVPGSMGSSPFFSAEAHHINFTVGQDQCRGMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEE-----------RFNIAILGA---ANAYSSKEKSVTWY--ELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITRTVVPE--ESIVVTRVKEAGPGGQKSRVMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPS 322
             ++  GEV+R+W +    G  H + L+H  +TG R+  V  EE+ GS+G+S  F      I F  G   CRG + I+++  F F Y C  +G  +       AD               R N   + A      ++S    + WY  E   ++G + A T VHRR+R+F  L E +  A  GHH+R+S+P LP ++LKL  DHND AF+E RR  L+  + KL+ VPHV A  P   F+G  + ++E+SV+F +R LG ++ ++   E  E+     V    P      + +GD LSK+ G  V+           +    RPI++HFL  +   PS
Sbjct:    2 VSIFSGEVNRTWRFCDGGGQHHEVSLYHHPLTGARAALVDHEELEGSLGTSSVFHGSTTTIPFACGG--CRGAIHIQRSAFFGFSYACSADGVSVPEATSATADPRRAPGHAGRSGPALRVNSCRVLAHVTTRDHASPSAPIVWYLIETHASKGDEVATTRVHRRFRDFADLDEAITGALAGHHVRNSVPRLPLKKLKLFQDHNDAAFLEARRRDLDGYVAKLVHVPHVWATPPAAPFVGVANNVREYSVVFPERTLGFTLGKSSGAESRENDFPAFVASCRPPDCPVDIRIGDLLSKISGRCVNA----------IKHSQRPIMLHFLATLGSVPS 326          
BLAST of EWM22419.1 vs. NCBI_GenBank
Match: gi|299116611|emb|CBN76238.1| (PX domain containing protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 154.066 bits (388), Expect = 2.600e-37
Identity = 96/265 (36.23%), Postives = 136/265 (51.32%), Query Frame = 0
Query:   75 GMVIIEKAGLFSFRYTCVVNGRPLKATLQGLADEDEERFNIAILGAANAYSSKEKSVTWYELTVTRGSDGARTLVHRRYREFVCLFEQVHAAFKGHHLRSSLPELPGRQLKLLVDHNDTAFVEERRLLLETALGKLLSVPHVGAMVPVQVFLGFFDRLKEHSVIFTQRDLGLSITR-TVVPEESIVVTRVKEAGPGGQKSR----------------VMVGDTLSKVGGEPVSKFGGFDGVAFQVSRGLRPIVIHFLEPVDRNPS 322
            G + I + GL  F Y C VNG+ +  T   + + D E + +++    +   S+   VTWYE+   R +D   TLVHRR+R+F  L EQV +  KGHHLRSSLP  PG++ KL  +H D +FVEERR  LE  L  LL +PHV  +   + FLG    L+E SV +  ++LG  + R + V    + V     AGP G                    V  GD L KV G+  ++    +     V+R  RP+++HFL P+ R  S
Sbjct:   12 GRLSILRRGLTGFSYECEVNGKLVLDTTSVVQNTDYE-YEVSVPATVDT-GSRVSGVTWYEVHTMRKADSKGTLVHRRFRDFYALQEQVESLMKGHHLRSSLPRFPGKKSKLWTNHGDLSFVEERRKALEQYLKTLLQLPHVSTLDSTRAFLGMVGNLREFSVSWEGKELGAKLKRASEVAGGKLGVGGAGSAGPNGDGGAPPVITSVLGNGRSPPGVCPGDRLFKVNGDS-TELMSLEAAWSSVARATRPVMLHFLGPILRMDS 273          
The following BLAST results are available for this feature:
BLAST of EWM22419.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585102925|gb|EWM22419.1|0.000e+0100.00px domain containing protein [Nannochloropsis gadi... [more]
gi|553182844|ref|XP_005853793.1|0.000e+099.88px domain containing protein [Nannochloropsis gadi... [more]
gi|676389975|ref|XP_009038266.1|4.008e-4132.64hypothetical protein AURANDRAFT_71905 [Aureococcus... [more]
gi|299116611|emb|CBN76238.1|2.600e-3736.23PX domain containing protein (Partial), partial [E... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8253rna8253Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications