EWM22427.1, cds8207 (CDS) Nannochloropsis gaditana

Overview
NameEWM22427.1
Unique Namecds8207
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:138707..138783 +
Alignment locationKK037248.1:138958..139175 +
Alignment locationKK037248.1:139303..139349 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22427.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100011g43.3427.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:138707..138783 +
KK037248.1supercontigKK037248.1:138958..139175 +
KK037248.1supercontigKK037248.1:139303..139349 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003961FN3_dom
Homology
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|585102933|gb|EWM22427.1| (hypothetical protein Naga_100011g43 [Nannochloropsis gaditana])

HSP 1 Score: 233.032 bits (593), Expect = 1.061e-77
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MTPEVLLPPEEPRFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCIC 113
            MTPEVLLPPEEPRFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCIC
Sbjct:    1 MTPEVLLPPEEPRFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCIC 113          
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|219119639|ref|XP_002180575.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408048|gb|EEC47983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.8702 bits (185), Expect = 1.593e-15
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 0
Query:   13 RFVAAEDTSIRVEWDAVD--TLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCI 112
             F+ A +T+I VE+D      + Y +Q+K++ Q W  A+   + +   +  A    L+P  TYCVRL+  D  G +  P P++ +DT+   CTPK  KACCI
Sbjct:   10 NFIEASETTIVVEFDPSSDAGVSYILQWKDHSQPWSAASTKTIRASSGKTKAEAEPLEPGTTYCVRLMVRDASGQDGEPSPQLVLDTEQVGCTPKADKACCI 111          
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|1072237729|gb|OEU22456.1| (hypothetical protein FRACYDRAFT_273888 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.1738 bits (178), Expect = 2.081e-14
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 0
Query:   11 EPRFVAAEDTSIRVEWDAVDTL-RYRIQYKEYLQSWEEAAQVDVP---SGQNRMVAA-LPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKAC-CI 112
            +P  + A +T+I VE+  + ++ +Y +++K+    W+      +     G+ ++V     DL P  TYCVR   ++ DGL+  PGPE+ +DT+   CTPK +K+C CI
Sbjct:   10 KPELIEATETTISVEFKPISSIDKYELEWKQIEHQWDTKPVGSISLSVQGEGKLVTGEAIDLLPGMTYCVRSYCINSDGLKGTPGPELIIDTEQVGCTPKSEKSCGCI 117          
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|298707104|emb|CBJ29896.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 58.9214 bits (141), Expect = 5.754e-9
Identity = 32/104 (30.77%), Postives = 49/104 (47.12%), Query Frame = 0
Query:   13 RFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQS-WEEAAQVDVP---SGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCI 112
            +F   E  SI + W+  +   Y+++++E L S W     + +    S    M   +  L P ++Y  RL  V   G E  PGPEI  DT+  +C P +K  C I
Sbjct:    7 QFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTI 110          
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|950897527|ref|XP_014529341.1| (hypothetical protein JH06_0509 [Blastocystis sp. subtype 4] >gi|902863952|gb|KNB45898.1| hypothetical protein JH06_0509 [Blastocystis sp. subtype 4])

HSP 1 Score: 58.151 bits (139), Expect = 1.571e-8
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 0
Query:    6 LLPPEEPRFVAAEDTSIRVEWDAVDTLR-YRIQYKEYLQ-SWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGL--ESPPGPEIFVDTQAANCTPKHKKACCIC 113
            L  P    +V A + +I + W+ V+    Y I  K+ LQ +W + +   V SG     A + +L P AT+ +R+VA+  D    ES     IF DT   +CTPK KK C IC
Sbjct:   15 LDAPTGLSYVEATENTITISWNPVNHASGYMILCKDVLQKAWSDCSSTIVDSGST--TAVIEELYPTATFEIRIVALSNDSNYEESNESESIFCDTMVGSCTPK-KKCCGIC 123          
The following BLAST results are available for this feature:
BLAST of EWM22427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102933|gb|EWM22427.1|1.061e-77100.00hypothetical protein Naga_100011g43 [Nannochlorops... [more]
gi|219119639|ref|XP_002180575.1|1.593e-1536.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072237729|gb|OEU22456.1|2.081e-1433.33hypothetical protein FRACYDRAFT_273888 [Fragilario... [more]
gi|298707104|emb|CBJ29896.1|5.754e-930.77expressed unknown protein [Ectocarpus siliculosus][more]
gi|950897527|ref|XP_014529341.1|1.571e-835.71hypothetical protein JH06_0509 [Blastocystis sp. s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8231rna8231Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications