EWM22427.1, cds8207 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|585102933|gb|EWM22427.1| (hypothetical protein Naga_100011g43 [Nannochloropsis gaditana]) HSP 1 Score: 233.032 bits (593), Expect = 1.061e-77 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 Query: 1 MTPEVLLPPEEPRFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCIC 113 MTPEVLLPPEEPRFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCIC Sbjct: 1 MTPEVLLPPEEPRFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCIC 113
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|219119639|ref|XP_002180575.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408048|gb|EEC47983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 75.8702 bits (185), Expect = 1.593e-15 Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 0 Query: 13 RFVAAEDTSIRVEWDAVD--TLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCI 112 F+ A +T+I VE+D + Y +Q+K++ Q W A+ + + + A L+P TYCVRL+ D G + P P++ +DT+ CTPK KACCI Sbjct: 10 NFIEASETTIVVEFDPSSDAGVSYILQWKDHSQPWSAASTKTIRASSGKTKAEAEPLEPGTTYCVRLMVRDASGQDGEPSPQLVLDTEQVGCTPKADKACCI 111
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|1072237729|gb|OEU22456.1| (hypothetical protein FRACYDRAFT_273888 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 73.1738 bits (178), Expect = 2.081e-14 Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 0 Query: 11 EPRFVAAEDTSIRVEWDAVDTL-RYRIQYKEYLQSWEEAAQVDVP---SGQNRMVAA-LPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKAC-CI 112 +P + A +T+I VE+ + ++ +Y +++K+ W+ + G+ ++V DL P TYCVR ++ DGL+ PGPE+ +DT+ CTPK +K+C CI Sbjct: 10 KPELIEATETTISVEFKPISSIDKYELEWKQIEHQWDTKPVGSISLSVQGEGKLVTGEAIDLLPGMTYCVRSYCINSDGLKGTPGPELIIDTEQVGCTPKSEKSCGCI 117
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|298707104|emb|CBJ29896.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 58.9214 bits (141), Expect = 5.754e-9 Identity = 32/104 (30.77%), Postives = 49/104 (47.12%), Query Frame = 0 Query: 13 RFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQS-WEEAAQVDVP---SGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCI 112 +F E SI + W+ + Y+++++E L S W + + S M + L P ++Y RL V G E PGPEI DT+ +C P +K C I Sbjct: 7 QFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTI 110
BLAST of EWM22427.1 vs. NCBI_GenBank
Match: gi|950897527|ref|XP_014529341.1| (hypothetical protein JH06_0509 [Blastocystis sp. subtype 4] >gi|902863952|gb|KNB45898.1| hypothetical protein JH06_0509 [Blastocystis sp. subtype 4]) HSP 1 Score: 58.151 bits (139), Expect = 1.571e-8 Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 0 Query: 6 LLPPEEPRFVAAEDTSIRVEWDAVDTLR-YRIQYKEYLQ-SWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGL--ESPPGPEIFVDTQAANCTPKHKKACCIC 113 L P +V A + +I + W+ V+ Y I K+ LQ +W + + V SG A + +L P AT+ +R+VA+ D ES IF DT +CTPK KK C IC Sbjct: 15 LDAPTGLSYVEATENTITISWNPVNHASGYMILCKDVLQKAWSDCSSTIVDSGST--TAVIEELYPTATFEIRIVALSNDSNYEESNESESIFCDTMVGSCTPK-KKCCGIC 123 The following BLAST results are available for this feature:
BLAST of EWM22427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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