EWM22468.1, cds8193 (CDS) Nannochloropsis gaditana

Overview
NameEWM22468.1
Unique Namecds8193
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:106571..107545 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22468.1
ProductProtein of unknown function DUF602
Orig transcript idgnl|cribi|Naga_100011g30.3468.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:106571..107545 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR006735DUF602
IPR027799Rtf2_RING-finger
Homology
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|585102974|gb|EWM22468.1| (Protein of unknown function DUF602 [Nannochloropsis gaditana])

HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR 324
            MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR
Sbjct:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR 324          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1168956980|ref|XP_020469739.1| (protein RTF2 homolog [Monopterus albus])

HSP 1 Score: 139.813 bits (351), Expect = 1.684e-35
Identity = 106/313 (33.87%), Postives = 153/313 (48.88%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLN----PAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNN 309
            MG DGG +  + + ++G       K  E+V K      + + CA+S E+LR P+VACELG LYNK+A++  LL+ +       A AH+RG+KD+     T NP W                   +GE  NA    G   E+     +ICPV  +EMN K  F  +++ G V S+RALKEV A        PF  +D+I L   +EE   LR +M ERR+K+K +K +K +A  +     +   P+S E+     V  AK        + GG +S  V+  P G  +SS A   +R+ +K    S  F SLF  
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKIEKVDKNAELAAKWKYCALSQEKLRRPIVACELGRLYNKDAIIEYLLDKSAERPNAEAVAHVRGIKDIKELNLTDNPEW-------------------EGERRNAK---GDRYEDIHCGMFICPVVGLEMNGKHRFCYLQTCGCVFSDRALKEVKAEICHKCGDPFKDEDIIVLNGTKEEMEMLRAKMEERRAKAKTKKSKKSKAAET-----VSTSPESKEDASSLQVDVAK----RSSLQNGGESSQPVVAGPSGALSSSKAFATKRSIQKMEEKSEVFKSLFTT 276          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|573904147|ref|XP_006639796.1| (PREDICTED: protein RTF2 homolog [Lepisosteus oculatus] >gi|973201220|ref|XP_015220634.1| PREDICTED: protein RTF2 homolog [Lepisosteus oculatus])

HSP 1 Score: 134.035 bits (336), Expect = 2.692e-33
Identity = 107/319 (33.54%), Postives = 154/319 (48.28%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLN----PAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKK-RKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSL-----AGEAQRAAEKEMASSSAFASLFNN 309
            MG DGG +  + + ++G       K  E+V K    + R   CA+S E+LR P+VAC+LG LYNK+A++  LL+ +       A AHIRG+KD+     T NP W                     EG + G   G   EE   +++ICPV  +EMN +  F  +++ G V SERAL+EV          PF   D++ L   +EE  +LR+RM E+R+K+K  KK RK +A  +     +  GP S E    ++   A  K E+  ++E G  SS   G P G   SS      AG   +        S A+ SLF +
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKVEKVDKSAELVARWNYCALSQEKLRRPIVACDLGRLYNKDALIEYLLDKSAERPNAEAAAHIRGIKDVKELNLTDNPAW---------------------EG-DHGDAKGDRYEELRCARFICPVVGLEMNGRHKFCFLQTCGCVFSERALREVKTEICHKCGDPFQDSDVVILNGSKEEVEKLRQRMEEKRAKAKNGKKSRKSKAAATETEKGMKPGP-SEENHSSSLSTTAVQKPES--QKEAGSTSS-APGLP-GTATSSRTVKPGAGAGAKRPVPAAEKSEAYKSLFTS 286          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1129951039|ref|XP_019735009.1| (PREDICTED: protein RTF2 homolog [Hippocampus comes])

HSP 1 Score: 133.65 bits (335), Expect = 3.980e-33
Identity = 108/316 (34.18%), Postives = 158/316 (50.00%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTL----NPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGK-----REGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLF 307
            MG DGG +  + + ++G       K  E+V K      + + CA+S E+LR P+VACELG LYNK+AV+  LL+ +       A  HIRG KD+     T NP W                    GE +N     G   E+     +ICPV  +EMN K  F  +R+ G V S+RALKEV          PF S D++ L   +EE  +LR  M ERR+K+K +K +K +A  S     +    +S ++TQ  + K  K  +ENGG+     + GG  +S++  A  G   SS+A  ++R+ ++    S AF S+F
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELAAKWKHCALSQEKLRRPIVACELGRLYNKDAVIEYLLDKSAERPNTDAVTHIRGTKDIRELNLTDNPEWG-------------------GERSNTK---GDRYEDIHCGMFICPVVGLEMNGKHRFCYLRTCGCVFSDRALKEVKTEICHKCGDPFQSADIVVLNGTKEEVEKLRENMEERRAKAKTKKSKKSKAAES-----VSTPSQSKDDTQ--MDKVQKCSLENGGESSQSDQAGGSGASRLSSAVNGGGPSSVA--SKRSIQEMEEKSEAFKSIF 279          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1083322871|ref|XP_018611634.1| (PREDICTED: protein RTF2 homolog [Scleropages formosus])

HSP 1 Score: 132.88 bits (333), Expect = 7.419e-33
Identity = 96/313 (30.67%), Postives = 149/313 (47.60%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTL----NPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNN 309
            MG DGG +  + + ++G       K  E+V K    L R + CA+S E+LR P+VAC+LG LYNK+AV+  LL+ +     +   AHIRG+KD+     T NP W  E +                      T  G   E+   +++ICPV  +EMN K  F  +R+ G V SERAL+EV          PF   D++ L   +E+   L+ RM E+R+K K  K + ++ + +    +  E PK HE + +A     +     G K     A S       G + ++ AG ++R+ +     S  + S+F +
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELLARWKYCALSQEKLRRPIVACDLGRLYNKDAVIEYLLDKSAERPNSEVVAHIRGIKDVKELNLTDNPAWEGERS----------------------TSKGDRYEDLHCAQFICPVVGLEMNGKHKFCFLRTCGCVFSERALREVKTEICHKCGEPFQDSDIVILNGGKEDMERLQVRMEEKRAKEKSAKGKCKKTKVAQTVSK-SEAPKVHEGSPEATSSEPRDAEPKGEKHSTPAAESS------GSRPAAAAG-SKRSVQSMEGKSEVYKSIFTS 277          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|928077265|ref|XP_013888633.1| (PREDICTED: protein RTF2 homolog [Austrofundulus limnaeus])

HSP 1 Score: 132.109 bits (331), Expect = 1.589e-32
Identity = 83/218 (38.07%), Postives = 110/218 (50.46%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTL----NPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERR 214
            MG DGG +  + + ++G       K  E+V K      + + CA+S E+LR P+VACELG LYNK+AV+  LL+ T     + A  HIRG+KD+     T NP W                   +GE  NA    G   E+     +ICPV  +EMN K  F  +++ G V SERALKEV          PF  DDLI L   +EE  +LR +M ERR
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELAAKWKYCALSQEKLRRPIVACELGRLYNKDAVIEYLLDKTAERPNSEAVTHIRGIKDIKELNLTDNPEW-------------------EGERRNAK---GDKYEDIHCGMFICPVVGLEMNGKHRFCYLQTCGCVFSERALKEVKTEICHKCGDPFKEDDLIVLNGSKEEVEKLREKMEERR 190          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1041073490|ref|XP_017264457.1| (PREDICTED: protein RTF2 homolog [Kryptolebias marmoratus])

HSP 1 Score: 131.724 bits (330), Expect = 1.599e-32
Identity = 106/316 (33.54%), Postives = 152/316 (48.10%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLN----PAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMG---LQASSLAGEAQRAAEKEMASSSAFASLFNN 309
            MG DGG +  + + ++G       K  E+V K      + + CA+S E+LR P+VACELG LYNK+AV+  LL+ T       A  HIRG+KD+     T NP W                   +GEG N     G   E+     +ICPV  +EMN K  F  +++ G V SERALKEV          PF  D+++ L   +EE  +LR +M ERR+K+K +K +K +A  +     +    +S ++ Q + V  A    E G  + GG +S   +  P G      SS A   +R+ +     S AF SLF  
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELAAKWKYCALSQEKLRRPIVACELGRLYNKDAVIEYLLDKTAERPNAEAVVHIRGIKDIKELNLTDNPEW-------------------EGEGRNTK---GDRYEDIHCGMFICPVVGLEMNGKHRFCYLQTCGCVFSERALKEVKTEICHKCGDPFKDDNVLVLNGTKEEVEKLREKMEERRAKAKTKKCKKSKAAET-----VSTTAESKDDPQSSSVDVA----ETGSLQNGGESSQSAVAGPSGASSSTKSSTASATKRSIQDMEEKSEAFKSLFTT 279          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1048066879|ref|XP_017485963.1| (PREDICTED: protein RTF2 homolog [Rhagoletis zephyria])

HSP 1 Score: 129.028 bits (323), Expect = 1.459e-31
Identity = 108/326 (33.13%), Postives = 159/326 (48.77%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALL--EHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVG--AASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQ-RAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAE-----KEMASSSAFASLFNNGDEKADK 316
            MG DGG +  + + ++    K  +    ++  +++       CA+SS +L  P+V+CELG LYNK+A++  LL  E        HIR +KD++A   T    + ++  A                        G    +   S Y+CP+  +EMN K  F  IRS G V+SERA+KEV   A +      PF  DDLI L  ++EE  +LR+RM ERRSK+K EKKRK+ +A    E GR  +  K+  +TQ  V   +K    NG       ASS V       +ASSL+    +AA+     K+  +S A+ SLF   +   +K
Sbjct:    1 MGCDGGTIPRRDELVKTKKKKEQKDKKADMVAKWK------YCAISSNKLVKPIVSCELGRLYNKDAIIEFLLNKESPNASMLNHIRNLKDIVALVLTEKQGYKEQDTA------------------------GDQESDVQDSLYVCPITSLEMNGKYKFYYIRSCGCVMSERAIKEVKTEAKTCLLCTKPFVEDDLILLNGNDEEVEDLRKRMVERRSKAKDEKKRKRGKASSDEEKGR--KEQKTTVDTQ--VPSTSKSSTANGS---STSASSNV-------KASSLSVLQNKAAKDYSVSKDPNASEAYKSLFTTHESAKNK 282          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|27735473|gb|AAH41317.1| (Similar to chromosome 20 open reading frame 43, partial [Xenopus laevis])

HSP 1 Score: 125.946 bits (315), Expect = 2.347e-31
Identity = 79/218 (36.24%), Postives = 109/218 (50.00%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAF----AHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERR 214
            MG DGG +  + + ++G       K  E+V K    + R   C +S ERL  P+VACELG LYNK+AV+  LL+ + +       AHI+G+K +I    + NP WT                     G    T   ++ ++ A  ++ICPV  +EMN K  F V+R  G V SERALKE+           F   DLI L  D+EE  ELR++M ERR
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELVARWFYCTLSQERLTKPIVACELGRLYNKDAVIEFLLDKSPDKPHADSAAHIKGIKSIIELNLSDNPAWT---------------------GRKGNTKGDTYDDQCA--QFICPVVGLEMNGKHRFCVLRKCGCVFSERALKEIKTDVCHKCGASFQETDLILLNGDKEEVEELRKKMEERR 189          
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|148236615|ref|NP_001082703.1| (replication termination factor 2 domain containing 1 S homeolog [Xenopus laevis] >gi|32484231|gb|AAH54212.1| MGC64388 protein [Xenopus laevis])

HSP 1 Score: 128.642 bits (322), Expect = 3.033e-31
Identity = 79/218 (36.24%), Postives = 109/218 (50.00%), Query Frame = 0
Query:    1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAF----AHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERR 214
            MG DGG +  + + ++G       K  E+V K    + R   C +S ERL  P+VACELG LYNK+AV+  LL+ + +       AHI+G+K +I    + NP WT                     G    T   ++ ++ A  ++ICPV  +EMN K  F V+R  G V SERALKE+           F   DLI L  D+EE  ELR++M ERR
Sbjct:    1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELVARWFYCTLSQERLTKPIVACELGRLYNKDAVIEFLLDKSPDKPHADSAAHIKGIKSIIELNLSDNPAWT---------------------GRKGNTKGDTYDDQCA--QFICPVVGLEMNGKHRFCVLRKCGCVFSERALKEIKTDVCHKCGASFQETDLILLNGDKEEVEELRKKMEERR 189          
The following BLAST results are available for this feature:
BLAST of EWM22468.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102974|gb|EWM22468.1|0.000e+0100.00Protein of unknown function DUF602 [Nannochloropsi... [more]
gi|1168956980|ref|XP_020469739.1|1.684e-3533.87protein RTF2 homolog [Monopterus albus][more]
gi|573904147|ref|XP_006639796.1|2.692e-3333.54PREDICTED: protein RTF2 homolog [Lepisosteus ocula... [more]
gi|1129951039|ref|XP_019735009.1|3.980e-3334.18PREDICTED: protein RTF2 homolog [Hippocampus comes... [more]
gi|1083322871|ref|XP_018611634.1|7.419e-3330.67PREDICTED: protein RTF2 homolog [Scleropages formo... [more]
gi|928077265|ref|XP_013888633.1|1.589e-3238.07PREDICTED: protein RTF2 homolog [Austrofundulus li... [more]
gi|1041073490|ref|XP_017264457.1|1.599e-3233.54PREDICTED: protein RTF2 homolog [Kryptolebias marm... [more]
gi|1048066879|ref|XP_017485963.1|1.459e-3133.13PREDICTED: protein RTF2 homolog [Rhagoletis zephyr... [more]
gi|27735473|gb|AAH41317.1|2.347e-3136.24Similar to chromosome 20 open reading frame 43, pa... [more]
gi|148236615|ref|NP_001082703.1|3.033e-3136.24replication termination factor 2 domain containing... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8217rna8217Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications