EWM22468.1, cds8193 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|585102974|gb|EWM22468.1| (Protein of unknown function DUF602 [Nannochloropsis gaditana]) HSP 1 Score: 659.448 bits (1700), Expect = 0.000e+0 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR 324
MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR
Sbjct: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNNGDEKADKNRLFSVRR 324
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1168956980|ref|XP_020469739.1| (protein RTF2 homolog [Monopterus albus]) HSP 1 Score: 139.813 bits (351), Expect = 1.684e-35 Identity = 106/313 (33.87%), Postives = 153/313 (48.88%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLN----PAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNN 309
MG DGG + + + ++G K E+V K + + CA+S E+LR P+VACELG LYNK+A++ LL+ + A AH+RG+KD+ T NP W +GE NA G E+ +ICPV +EMN K F +++ G V S+RALKEV A PF +D+I L +EE LR +M ERR+K+K +K +K +A + + P+S E+ V AK + GG +S V+ P G +SS A +R+ +K S F SLF
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKIEKVDKNAELAAKWKYCALSQEKLRRPIVACELGRLYNKDAIIEYLLDKSAERPNAEAVAHVRGIKDIKELNLTDNPEW-------------------EGERRNAK---GDRYEDIHCGMFICPVVGLEMNGKHRFCYLQTCGCVFSDRALKEVKAEICHKCGDPFKDEDIIVLNGTKEEMEMLRAKMEERRAKAKTKKSKKSKAAET-----VSTSPESKEDASSLQVDVAK----RSSLQNGGESSQPVVAGPSGALSSSKAFATKRSIQKMEEKSEVFKSLFTT 276
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|573904147|ref|XP_006639796.1| (PREDICTED: protein RTF2 homolog [Lepisosteus oculatus] >gi|973201220|ref|XP_015220634.1| PREDICTED: protein RTF2 homolog [Lepisosteus oculatus]) HSP 1 Score: 134.035 bits (336), Expect = 2.692e-33 Identity = 107/319 (33.54%), Postives = 154/319 (48.28%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLN----PAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKK-RKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSL-----AGEAQRAAEKEMASSSAFASLFNN 309
MG DGG + + + ++G K E+V K + R CA+S E+LR P+VAC+LG LYNK+A++ LL+ + A AHIRG+KD+ T NP W EG + G G EE +++ICPV +EMN + F +++ G V SERAL+EV PF D++ L +EE +LR+RM E+R+K+K KK RK +A + + GP S E ++ A K E+ ++E G SS G P G SS AG + S A+ SLF +
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKVEKVDKSAELVARWNYCALSQEKLRRPIVACDLGRLYNKDALIEYLLDKSAERPNAEAAAHIRGIKDVKELNLTDNPAW---------------------EG-DHGDAKGDRYEELRCARFICPVVGLEMNGRHKFCFLQTCGCVFSERALREVKTEICHKCGDPFQDSDVVILNGSKEEVEKLRQRMEEKRAKAKNGKKSRKSKAAATETEKGMKPGP-SEENHSSSLSTTAVQKPES--QKEAGSTSS-APGLP-GTATSSRTVKPGAGAGAKRPVPAAEKSEAYKSLFTS 286
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1129951039|ref|XP_019735009.1| (PREDICTED: protein RTF2 homolog [Hippocampus comes]) HSP 1 Score: 133.65 bits (335), Expect = 3.980e-33 Identity = 108/316 (34.18%), Postives = 158/316 (50.00%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTL----NPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGK-----REGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLF 307
MG DGG + + + ++G K E+V K + + CA+S E+LR P+VACELG LYNK+AV+ LL+ + A HIRG KD+ T NP W GE +N G E+ +ICPV +EMN K F +R+ G V S+RALKEV PF S D++ L +EE +LR M ERR+K+K +K +K +A S + +S ++TQ + K K +ENGG+ + GG +S++ A G SS+A ++R+ ++ S AF S+F
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELAAKWKHCALSQEKLRRPIVACELGRLYNKDAVIEYLLDKSAERPNTDAVTHIRGTKDIRELNLTDNPEWG-------------------GERSNTK---GDRYEDIHCGMFICPVVGLEMNGKHRFCYLRTCGCVFSDRALKEVKTEICHKCGDPFQSADIVVLNGTKEEVEKLRENMEERRAKAKTKKSKKSKAAES-----VSTPSQSKDDTQ--MDKVQKCSLENGGESSQSDQAGGSGASRLSSAVNGGGPSSVA--SKRSIQEMEEKSEAFKSIF 279
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1083322871|ref|XP_018611634.1| (PREDICTED: protein RTF2 homolog [Scleropages formosus]) HSP 1 Score: 132.88 bits (333), Expect = 7.419e-33 Identity = 96/313 (30.67%), Postives = 149/313 (47.60%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTL----NPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAEKEMASSSAFASLFNN 309
MG DGG + + + ++G K E+V K L R + CA+S E+LR P+VAC+LG LYNK+AV+ LL+ + + AHIRG+KD+ T NP W E + T G E+ +++ICPV +EMN K F +R+ G V SERAL+EV PF D++ L +E+ L+ RM E+R+K K K + ++ + + + E PK HE + +A + G K A S G + ++ AG ++R+ + S + S+F +
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELLARWKYCALSQEKLRRPIVACDLGRLYNKDAVIEYLLDKSAERPNSEVVAHIRGIKDVKELNLTDNPAWEGERS----------------------TSKGDRYEDLHCAQFICPVVGLEMNGKHKFCFLRTCGCVFSERALREVKTEICHKCGEPFQDSDIVILNGGKEDMERLQVRMEEKRAKEKSAKGKCKKTKVAQTVSK-SEAPKVHEGSPEATSSEPRDAEPKGEKHSTPAAESS------GSRPAAAAG-SKRSVQSMEGKSEVYKSIFTS 277
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|928077265|ref|XP_013888633.1| (PREDICTED: protein RTF2 homolog [Austrofundulus limnaeus]) HSP 1 Score: 132.109 bits (331), Expect = 1.589e-32 Identity = 83/218 (38.07%), Postives = 110/218 (50.46%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTL----NPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERR 214
MG DGG + + + ++G K E+V K + + CA+S E+LR P+VACELG LYNK+AV+ LL+ T + A HIRG+KD+ T NP W +GE NA G E+ +ICPV +EMN K F +++ G V SERALKEV PF DDLI L +EE +LR +M ERR
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELAAKWKYCALSQEKLRRPIVACELGRLYNKDAVIEYLLDKTAERPNSEAVTHIRGIKDIKELNLTDNPEW-------------------EGERRNAK---GDKYEDIHCGMFICPVVGLEMNGKHRFCYLQTCGCVFSERALKEVKTEICHKCGDPFKEDDLIVLNGSKEEVEKLREKMEERR 190
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1041073490|ref|XP_017264457.1| (PREDICTED: protein RTF2 homolog [Kryptolebias marmoratus]) HSP 1 Score: 131.724 bits (330), Expect = 1.599e-32 Identity = 106/316 (33.54%), Postives = 152/316 (48.10%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLN----PAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQRAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMG---LQASSLAGEAQRAAEKEMASSSAFASLFNN 309
MG DGG + + + ++G K E+V K + + CA+S E+LR P+VACELG LYNK+AV+ LL+ T A HIRG+KD+ T NP W +GEG N G E+ +ICPV +EMN K F +++ G V SERALKEV PF D+++ L +EE +LR +M ERR+K+K +K +K +A + + +S ++ Q + V A E G + GG +S + P G SS A +R+ + S AF SLF
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELAAKWKYCALSQEKLRRPIVACELGRLYNKDAVIEYLLDKTAERPNAEAVVHIRGIKDIKELNLTDNPEW-------------------EGEGRNTK---GDRYEDIHCGMFICPVVGLEMNGKHRFCYLQTCGCVFSERALKEVKTEICHKCGDPFKDDNVLVLNGTKEEVEKLREKMEERRAKAKTKKCKKSKAAET-----VSTTAESKDDPQSSSVDVA----ETGSLQNGGESSQSAVAGPSGASSSTKSSTASATKRSIQDMEEKSEAFKSLFTT 279
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|1048066879|ref|XP_017485963.1| (PREDICTED: protein RTF2 homolog [Rhagoletis zephyria]) HSP 1 Score: 129.028 bits (323), Expect = 1.459e-31 Identity = 108/326 (33.13%), Postives = 159/326 (48.77%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALL--EHTLNPAFAHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVG--AASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERRSKSKKEKKRKQ-RAEGSSEGGRLGEGPKSHEETQKAVVKAAKLKVENGGKREGGMASSQVLGAPMGLQASSLAGEAQRAAE-----KEMASSSAFASLFNNGDEKADK 316
MG DGG + + + ++ K + ++ +++ CA+SS +L P+V+CELG LYNK+A++ LL E HIR +KD++A T + ++ A G + S Y+CP+ +EMN K F IRS G V+SERA+KEV A + PF DDLI L ++EE +LR+RM ERRSK+K EKKRK+ +A E GR + K+ +TQ V +K NG ASS V +ASSL+ +AA+ K+ +S A+ SLF + +K
Sbjct: 1 MGCDGGTIPRRDELVKTKKKKEQKDKKADMVAKWK------YCAISSNKLVKPIVSCELGRLYNKDAIIEFLLNKESPNASMLNHIRNLKDIVALVLTEKQGYKEQDTA------------------------GDQESDVQDSLYVCPITSLEMNGKYKFYYIRSCGCVMSERAIKEVKTEAKTCLLCTKPFVEDDLILLNGNDEEVEDLRKRMVERRSKAKDEKKRKRGKASSDEEKGR--KEQKTTVDTQ--VPSTSKSSTANGS---STSASSNV-------KASSLSVLQNKAAKDYSVSKDPNASEAYKSLFTTHESAKNK 282
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|27735473|gb|AAH41317.1| (Similar to chromosome 20 open reading frame 43, partial [Xenopus laevis]) HSP 1 Score: 125.946 bits (315), Expect = 2.347e-31 Identity = 79/218 (36.24%), Postives = 109/218 (50.00%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAF----AHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERR 214
MG DGG + + + ++G K E+V K + R C +S ERL P+VACELG LYNK+AV+ LL+ + + AHI+G+K +I + NP WT G T ++ ++ A ++ICPV +EMN K F V+R G V SERALKE+ F DLI L D+EE ELR++M ERR
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELVARWFYCTLSQERLTKPIVACELGRLYNKDAVIEFLLDKSPDKPHADSAAHIKGIKSIIELNLSDNPAWT---------------------GRKGNTKGDTYDDQCA--QFICPVVGLEMNGKHRFCVLRKCGCVFSERALKEIKTDVCHKCGASFQETDLILLNGDKEEVEELRKKMEERR 189
BLAST of EWM22468.1 vs. NCBI_GenBank
Match: gi|148236615|ref|NP_001082703.1| (replication termination factor 2 domain containing 1 S homeolog [Xenopus laevis] >gi|32484231|gb|AAH54212.1| MGC64388 protein [Xenopus laevis]) HSP 1 Score: 128.642 bits (322), Expect = 3.033e-31 Identity = 79/218 (36.24%), Postives = 109/218 (50.00%), Query Frame = 0
Query: 1 MGNDGGVLAMQRKFMRGLGNKMGEKPSEEVSKRFRALIRSRVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAF----AHIRGMKDLIACRFTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEEETELRRRMNERR 214
MG DGG + + + ++G K E+V K + R C +S ERL P+VACELG LYNK+AV+ LL+ + + AHI+G+K +I + NP WT G T ++ ++ A ++ICPV +EMN K F V+R G V SERALKE+ F DLI L D+EE ELR++M ERR
Sbjct: 1 MGCDGGTIPKRHELVKG------PKKVEKVDKNAELVARWFYCTLSQERLTKPIVACELGRLYNKDAVIEFLLDKSPDKPHADSAAHIKGIKSIIELNLSDNPAWT---------------------GRKGNTKGDTYDDQCA--QFICPVVGLEMNGKHRFCVLRKCGCVFSERALKEIKTDVCHKCGASFQETDLILLNGDKEEVEELRKKMEERR 189 The following BLAST results are available for this feature:
BLAST of EWM22468.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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