EWM22443.1, cds8192 (CDS) Nannochloropsis gaditana

Overview
NameEWM22443.1
Unique Namecds8192
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:105046..105421 +
Alignment locationKK037248.1:105556..106340 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22443.1
ProductTic22-like protein
Orig transcript idgnl|cribi|Naga_100011g29.3443.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:105046..105421 +
KK037248.1supercontigKK037248.1:105556..106340 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR007378Tic22-like
Homology
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|585102949|gb|EWM22443.1| (Tic22-like protein [Nannochloropsis gaditana])

HSP 1 Score: 797.349 bits (2058), Expect = 0.000e+0
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query:    1 MIHALDRMARCRGSGASFMLLVLLLVEVLHGVCVLAFQPGSSGPFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARPIRAS 386
            MIHALDRMARCRGSGASFMLLVLLLVEVLHGVCVLAFQPGSSGPFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARPIRAS
Sbjct:    1 MIHALDRMARCRGSGASFMLLVLLLVEVLHGVCVLAFQPGSSGPFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARPIRAS 386          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|546315296|ref|XP_005715824.1| (unnamed protein product [Chondrus crispus] >gi|507112319|emb|CDF36005.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 125.176 bits (313), Expect = 5.519e-30
Identity = 82/237 (34.60%), Postives = 126/237 (53.16%), Query Frame = 0
Query:  155 FSRRTLKEKLASVPCFLVCNQQGSPYLVPLE-TGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDR-STAGKHGAAPGEVKTLDFLRVVEWMLNEPE-QTRLVGFHASTQAQEYVEAQLRVKGGKAR 381
            FS++T+ EKL+ VP F V N  G PYL  ++ +G  +G++F    DA  ML+ M +NP  +DARV +MGLDK  E+V+++P+ +G          +VF+F P  +Q+K A G ++            K R    R+GV   G+PVF    L + KG E V P+F + EDL  AW +   + K       V   + L +++ M ++ E + R +GF A   + EYV  +     G+AR
Sbjct:   22 FSKKTVSEKLSQVPVFAVTNASGQPYLANMDGSGSQIGLIFFSHHDALNMLKDMKKNPGASDARVYIMGLDKAYEMVKAKPQPSGIRGAAGEELTMVFRFFPDSKQVKAAEGLQR------------KLR---RRRGVE--GIPVFVAKGLTLRKGSENVVPLFLTKEDLDSAWSKLRDSNKDLPNNASVVVGNLLYIIQQMESDGEPELRNLGFFAPKASVEYVTKEQAGPTGQAR 241          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|544212257|ref|XP_005534848.1| (similar to chloroplast inner membrane protein Tic22 [Cyanidioschyzon merolae strain 10D] >gi|449016839|dbj|BAM80241.1| similar to chloroplast inner membrane protein Tic22 [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 116.701 bits (291), Expect = 7.082e-26
Identity = 82/238 (34.45%), Postives = 125/238 (52.52%), Query Frame = 0
Query:  155 FSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNP--QTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWD--RSTAGKHGAAPGEVKTLDFLRVVEWM---------LNEPE--QTRLVGFHASTQAQEYVE 370
            +SR+TL EKLA VP F V N+ G P+L  +E G  VG++F DP DA +ML+ + ++   +  DAR+ +MGLD+  E+V+S+P+ +G          +VF+F P+ QQL+ A   R V  K    K+P           VR  G+P F    L + KG+E V P+F    DL  AW+  R    +    P E++  D + V+  +         LNE E    R V F  S+++ E+++
Sbjct:  127 YSRKTLSEKLAQVPVFAVTNESGQPFLAAMERGLQVGLIFFDPDDAIKMLEDLKRSSGKEAEDARIFIMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQLEYA---RTVAKKT---KQPT----------VR--GVPCFVAKGLTLRKGKEFVIPIFLDKRDLDEAWNRLRQELAELPKQP-EIEVGDLIEVILRLEEAAKNPKSLNETELQDLRRVAFFPSSKSVEFMK 345          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|298711744|emb|CBJ49281.1| (Tic22-like [Ectocarpus siliculosus])

HSP 1 Score: 113.235 bits (282), Expect = 2.317e-24
Identity = 91/296 (30.74%), Postives = 144/296 (48.65%), Query Frame = 0
Query:   86 WGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGF-DVGVVFLDPADAEEMLQSMVQ-NPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGE--VKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVE 370
            W   +  L+ G  ++   TF  GA  ++G  A    DV   +   R+     +       SAEA  L+PF +RT++EKLA++P F+V N++GSPYL P E G   + V F +  DA+EML  MVQ +    +AR+LV+ ++K   +V++ P+  G       +  + F+  P +   + A   R++G    LD  P             N  +PVFY   L + +   +VKP+F    DL  AW ++ A  +   P E  VK  +   V+  M    E  +  GF AST+  E+++
Sbjct:  100 WAGARRSLARGAASLA--TFTVGATALSGMSA----DVQHRLN-SRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKA---RRLG----LDVSP----------AAANIDVPVFYVEGLEVKRDGGLVKPLFMDPADLVEAWKKA-AASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQF-GFFASTEGAEFIK 369          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|162606048|ref|XP_001713539.1| (Tic22 [Guillardia theta] >gi|13794459|gb|AAK39834.1|AF165818_42 Tic22 (nucleomorph) [Guillardia theta])

HSP 1 Score: 100.138 bits (248), Expect = 3.034e-20
Identity = 57/226 (25.22%), Postives = 108/226 (47.79%), Query Frame = 0
Query:  155 FSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWD-RSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQ 372
            +S + L +K+  +P F V N  G PYL     G  +G++F    DA E+L++M +N Q+ DAR+ +MG DK  ++V S    +G       +  ++F+F P  +Q+      +             K+R           G+P+FY   ++I +G + + P+FFS+ED  YAW+              +K +D + ++  + +   +    GF  ++++ E++  +
Sbjct:   82 YSEKNLHQKMTQIPVFAVTNGTGQPYLANTSNGDQIGLIFFSHEDALELLKNMKKNHQSLDARITIMGFDKAYKMVSSGNSSSGLKDNYGQDLKMIFKFYPDQKQI------KNANGIINNINIFSKFR-----------GIPLFYNESVKINRGNDEITPLFFSLEDFNYAWELMKVRNPDQPVKPNIKVIDLIEMLSLIDSGNIEFSKFGFFPNSKSLEFLNKE 290          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|545712916|ref|XP_005708762.1| (chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria] >gi|452825244|gb|EME32242.1| chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria])

HSP 1 Score: 99.7525 bits (247), Expect = 5.223e-20
Identity = 98/338 (28.99%), Postives = 145/338 (42.90%), Query Frame = 0
Query:   44 PFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDV---GVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDR-STAGKHGAAPGEVKTLDFLRVV-EWMLNEPEQTRLVGFHASTQAQEYV 369
            PF   +G+  RRS  C S      TRS C       S  V+   ++  +     ++  KLT    A  V  F     V ++ G     N +GT +      P   A  LK   ++ LK KL+ VP F V N  G PYLV  E G D    G +F  P DA  M+  + Q   T D ++ V+GLDK  E+V + P  +G         M+ F   P  +Q++ A        + +L +   K  F          G+PVF    L + KG E   PVF   +DL  AW R   + K       ++  D  +++ E    + E+ R +GF AS ++ E++
Sbjct:   10 PFV--SGLKQRRSKICNSSNASYLTRSPCSVRWNLIS-CVNCKASVDNRRV--TKDNSKLTLKVIAMSVLSF-----VQLLSGQISSPNHLGTQMSSFQTQPVLAA-GLK--VKKNLKSKLSQVPVFAVTNSDGQPYLV--EDGNDKVQKGYIFFSPEDAGRMMTKVKQANGTEDIQIHVIGLDKAYEMVSNPPTSSGLKDEEGRELMMTFLLHPDSEQVQKA--------RELLKREKKKPAFD---------GIPVFVARGLMLRKGDESNVPVFLDKDDLELAWKRLRESDKSLPQHPVIEIADLFQLLKEIEKGDKEELRSLGFFASRKSIEWI 315          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|330038333|ref|XP_003239569.1| (translocator of the inner chloroplast membrane [Cryptomonas paramecium] >gi|327206493|gb|AEA38671.1| translocator of the inner chloroplast membrane (nucleomorph) [Cryptomonas paramecium])

HSP 1 Score: 98.9821 bits (245), Expect = 6.197e-20
Identity = 65/228 (28.51%), Postives = 111/228 (48.68%), Query Frame = 0
Query:  150 FSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRR---NGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDR--STAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQ 372
            FS   FS +   +KL+ +P F + N  G PYL        +G++F    DA  +L +M    Q +DAR+ +MGLD+   +V ++  +   N +   +F+F P  +Q+KNA+               +K  F    + +R+  +PVF    L + KG++ + PVFFS EDL   W +  S        P  V  +D L++++ M N+ +     GF  S +  E+++ +
Sbjct:   81 FSHARFSSKNYYQKLSQIPVFAITNSSGQPYLTTGPEKEQIGLIFFSHEDALALLTAMKNTHQVSDARIYIMGLDRAYRMVTADKTKNQLNQDFKTIFRFYPDQKQVKNASLI------------VNKLNF---YKTIRD--IPVFVADGLVVKKGKDSMTPVFFSKEDLEKTWKKMISENPDINVKPT-VLVVDLLKILKAMENDEKIFSKFGFFPSQKNIEFIKKE 290          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|873240559|emb|CEL93296.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 90.8929 bits (224), Expect = 4.156e-17
Identity = 73/245 (29.80%), Postives = 110/245 (44.90%), Query Frame = 0
Query:  153 KPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNP-QTADARVLVMGLDKGLELV-QSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPG-EVKTLDFLRVVEWMLNEPEQTRLV---GFHASTQAQEYVEAQLRVKGGKARPIR 384
            K FS R + E+L+SVP FL+ N    PYL  +  G    ++F DP +A  ML  MVQ     ADAR+ V+ L+K      ++EPRR G         ++ F+F P   Q++NA  +                       G R   +PVF    L + K  + + P+F  +EDL  AW+R    +    P  +V   + L V   +L+   Q   +   G   S++A ++V+        KAR IR
Sbjct:   66 KKFSSRPMDERLSSVPVFLITNSYALPYLTQVRPGEQTALMFTDPEEANTMLNEMVQTAGPGADARLFVISLEKAWAYARRAEPRRTGIVGEDGKEAVMTFKFHPP--QVENAGNY-------------------VTLLGRRTKMIPVFEATGLDVTKNGDKLCPLFMDLEDLEAAWERMHRARPDTPPKPKVSVYNLLDV---LLHRERQANGLGPWGIVPSSKALDFVKKNRSGGTRKARMIR 286          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|545705607|ref|XP_005705123.1| (chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria] >gi|452821574|gb|EME28603.1| chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria])

HSP 1 Score: 90.1225 bits (222), Expect = 1.700e-16
Identity = 73/242 (30.17%), Postives = 111/242 (45.87%), Query Frame = 0
Query:  135 GTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVP-LETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGL---PVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAP--GEVKTLDFLRVVEWML--NEPEQTRLVGFHA 361
            G+    ++ P  A + S K  +R  LKE+  +V  ++V NQ G P+L   +E+   VG+ F   ADA  ML  M Q      AR+  + LDK  ++V ++P  +G       +  +VF+FCP V Q++                        F RQ  +N  L   PVF  PDL + K  E + P F   EDL  +W +     H   P   +++ +D L V+E M     P+  +L GF+A
Sbjct:   97 GSNANNVLEPVIASSLS-KRRARELLKERTKNVKVYMVANQAGQPFLAEGVESNTQVGLFFFTAADASMMLMQMSQG-AGGSARIEAISLDKAYDMVTAKPTPSGLKDTKGRDLKVVFRFCPEVYQVR------------------------FYRQLAKNKSLRSVPVFVAPDLVLEKNNENLIPAFLDKEDLEKSW-KELKKTHPELPLRPKIEAVDLLDVLEEMEKGTNPDIYQL-GFYA 310          
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|1189384468|gb|OSX71701.1| (hypothetical protein BU14_0510s0017 [Porphyra umbilicalis])

HSP 1 Score: 88.5817 bits (218), Expect = 3.792e-16
Identity = 58/162 (35.80%), Postives = 82/162 (50.62%), Query Frame = 0
Query:  163 KLASVPCFLVCNQQGSPYLVPLE-TGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDL 316
            KLA VP F V N  G PYL  ++  G  VG++F    +A  M   M ++P TADARV +MGLDK  E+V+++P  +G          +VF+F P  +Q+ +A          +L   P          G   AG+PVF  P L + K  E V P+F + ED+
Sbjct:  123 KLAQVPVFAVTNAGGQPYLANVDGAGTQVGLIFFSHEEALSMQADMQKSPTTADARVYIMGLDKAYEMVKAKPTPSGIRGPAGEELRMVFRFSPDRKQVGHA--------ARLLRAVPIGG-------GGETAGVPVFAAPGLTLRKAGEPVVPLFLAKEDM 269          
The following BLAST results are available for this feature:
BLAST of EWM22443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102949|gb|EWM22443.1|0.000e+0100.00Tic22-like protein [Nannochloropsis gaditana][more]
gi|546315296|ref|XP_005715824.1|5.519e-3034.60unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|544212257|ref|XP_005534848.1|7.082e-2634.45similar to chloroplast inner membrane protein Tic2... [more]
gi|298711744|emb|CBJ49281.1|2.317e-2430.74Tic22-like [Ectocarpus siliculosus][more]
gi|162606048|ref|XP_001713539.1|3.034e-2025.22Tic22 [Guillardia theta] >gi|13794459|gb|AAK39834.... [more]
gi|545712916|ref|XP_005708762.1|5.223e-2028.99chloroplast inner membrane import protein Tic22 [G... [more]
gi|330038333|ref|XP_003239569.1|6.197e-2028.51translocator of the inner chloroplast membrane [Cr... [more]
gi|873240559|emb|CEL93296.1|4.156e-1729.80unnamed protein product [Vitrella brassicaformis C... [more]
gi|545705607|ref|XP_005705123.1|1.700e-1630.17chloroplast inner membrane import protein Tic22 [G... [more]
gi|1189384468|gb|OSX71701.1|3.792e-1635.80hypothetical protein BU14_0510s0017 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8216rna8216Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications