EWM22472.1, cds8168 (CDS) Nannochloropsis gaditana

Overview
NameEWM22472.1
Unique Namecds8168
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:57475..57633 +
Alignment locationKK037248.1:57818..58309 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22472.1
ProductProtein of unknown function DUF3007
Orig transcript idgnl|cribi|Naga_100011g5.3472.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:57475..57633 +
KK037248.1supercontigKK037248.1:57818..58309 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021562DUF3007
Homology
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|585102978|gb|EWM22472.1| (Protein of unknown function DUF3007 [Nannochloropsis gaditana])

HSP 1 Score: 436.417 bits (1121), Expect = 8.476e-155
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MSTLIYALSLWHWTKSTMTDQSAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGANMKQGGL 216
            MSTLIYALSLWHWTKSTMTDQSAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGANMKQGGL
Sbjct:    1 MSTLIYALSLWHWTKSTMTDQSAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGANMKQGGL 216          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|553184240|ref|XP_005854057.1| (hypothetical protein NGA_0486600 [Nannochloropsis gaditana CCMP526] >gi|422295005|gb|EKU22304.1| hypothetical protein NGA_0486600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 401.749 bits (1031), Expect = 2.682e-141
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:   18 MTDQSAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGANMKQGGL 216
            MTDQSAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGANMKQGGL
Sbjct:    1 MTDQSAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGANMKQGGL 199          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|1210532114|dbj|GAX09273.1| (hypothetical protein FisN_17Lu018 [Fistulifera solaris])

HSP 1 Score: 120.939 bits (302), Expect = 5.248e-31
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 0
Query:   99 KANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVAT-ALGVDGLQAGIYISVAMT-LGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKE 207
            +  KLP  LD  T+GG++F+S ++       YNVAT   G D ++ GI I V  T    VAW  TYIFRVA KDMTYAKQLK+YEDAV+AKRLEEL+E+EV+AL EE+E++
Sbjct:   65 EGRKLPFWLDPGTKGGVVFLSFVLFLVPLLAYNVATNVFGADEIETGITIGVGFTVFATVAWVSTYIFRVATKDMTYAKQLKDYEDAVIAKRLEELDEDEVKALQEEIERD 175          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|1072231634|gb|OEU16366.1| (hypothetical protein FRACYDRAFT_185821 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 118.627 bits (296), Expect = 1.183e-30
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 0
Query:   91 MATEDGPEKANK--LPMLLDVETRGGILFVSTLVTAAIFAGYNVATA-LGVDGLQAGIYISVAMTLG-MVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKE 207
            M   DG + A+K  LP  LD  TRGG + +  ++    F GY +AT+  G++G+ AG +I V  T    + W FTYIFRVA KDMTYAKQLK+YE+AV+AKRLEEL+++E++AL+EE+E++
Sbjct:    1 MENGDGEKSASKSNLPFWLDPGTRGGAVVLGIILFIVPFIGYAIATSVFGIEGVDAGKWIGVGFTAAATLVWVFTYIFRVATKDMTYAKQLKDYENAVIAKRLEELDDDEIQALVEEIERD 121          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|551562018|ref|XP_005767818.1| (hypothetical protein EMIHUDRAFT_427662 [Emiliania huxleyi CCMP1516] >gi|485618364|gb|EOD15389.1| hypothetical protein EMIHUDRAFT_427662 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 117.857 bits (294), Expect = 1.045e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   72 PPRFPSIASSSS--------TSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYN-VATALGVDGLQAGIYISVA-MTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGA 209
            PPR P + +  S         S     +A E   E+   LP  LD+ T+GGI+F S +   A F  YN +   +G+D + AG  I V  + LG VAWT TY+FRVANKDMTYAKQL++YE+AV+ KR EEL+ +EV ALM+E+  +G+
Sbjct:   27 PPRAPGVVAQHSPLRAAAAAPSRHAAPVAAE---ERRGGLPFFLDIGTKGGIVFYSVIGIVAPFLLYNFLQDQMGMDVVGAGNVILVGYVGLGTVAWTSTYVFRVANKDMTYAKQLRDYENAVIQKRFEELDNDEVSALMDEIYTDGS 171          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|551552124|ref|XP_005763457.1| (hypothetical protein EMIHUDRAFT_419792 [Emiliania huxleyi CCMP1516] >gi|551585070|ref|XP_005777833.1| hypothetical protein EMIHUDRAFT_420144 [Emiliania huxleyi CCMP1516] >gi|485612840|gb|EOD11028.1| hypothetical protein EMIHUDRAFT_419792 [Emiliania huxleyi CCMP1516] >gi|485630142|gb|EOD25404.1| hypothetical protein EMIHUDRAFT_420144 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 117.857 bits (294), Expect = 1.045e-29
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   72 PPRFPSIASSSS--------TSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYN-VATALGVDGLQAGIYISVA-MTLGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKEGA 209
            PPR P + +  S         S     +A E   E+   LP  LD+ T+GGI+F S +   A F  YN +   +G+D + AG  I V  + LG VAWT TY+FRVANKDMTYAKQL++YE+AV+ KR EEL+ +EV ALM+E+  +G+
Sbjct:   27 PPRAPGVVAQHSPLRAAAAAPSRHAAPVAAE---ERRGGLPFFLDIGTKGGIVFYSVIGIVAPFLLYNFLQDQMGMDVVGAGNVILVGYVGLGTVAWTSTYVFRVANKDMTYAKQLRDYENAVIQKRFEELDNDEVSALMDEIYTDGS 171          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|298709100|emb|CBJ31047.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 116.316 bits (290), Expect = 4.175e-29
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = 0
Query:   98 EKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTL-GMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEK 206
            ++ N LP  LD  TRGG + V TL        Y   TA+GVDG +AG ++ V  TL G++AW  +Y FRVA K+MTYA QLKNYE AV+ KR  ELEEEEV+AL++EV +
Sbjct:   69 QEKNNLPFFLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGSKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYEQAVIEKRFSELEEEEVDALLDEVNE 178          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|397576293|gb|EJK50173.1| (hypothetical protein THAOC_30885, partial [Thalassiosira oceanica])

HSP 1 Score: 117.472 bits (293), Expect = 9.827e-27
Identity = 68/145 (46.90%), Postives = 98/145 (67.59%), Query Frame = 0
Query:   67 PGHISPPRFPS--IASSSSTSHLTRRMATEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATA-LGVDGLQAGIYISVAMTL-GMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKE 207
            P  +S PR P+   A    +   T RM+ ++  E  + LPMLLD  T+GG +F+S ++       YNVAT  +G+D ++ G  I V  ++  M+ W  +Y+FRVA KDMTYAKQLK+YEDAV+AKRLEEL+E+EV+AL+E++E+E
Sbjct:  121 PLSLSQPRRPADPFAPCERSGRTTLRMSDQN-TEAKSSLPMLLDPGTKGGAVFLSVVLFVVPLIVYNVATGPMGMDEIEVGRNIGVGFSVVSMIFWLGSYVFRVATKDMTYAKQLKDYEDAVIAKRLEELDEDEVQALVEDIERE 264          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|219119239|ref|XP_002180384.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407857|gb|EEC47792.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.383 bits (272), Expect = 2.070e-26
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0
Query:   92 ATEDGPEKANKLPMLLDVETRGGILFVS-TLVTAAIFAGYNVATALGVDGLQAGIYISVAMT-LGMVAWTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVEKE 207
            A  DG  +  KLP  LD  T+GG +F+S  L    I     + T  G D ++ G +I +  T L  + W  TY+FRVA KDMTYAKQLK+YE+AV+AKRLEEL+E+E++AL EEVE++
Sbjct:   61 AEADGKVEKTKLPFWLDPGTKGGAVFLSLALFLFPILVYSIMTTFFGFDEIETGKWIGIGFTVLATLGWVSTYLFRVATKDMTYAKQLKDYENAVIAKRLEELDEDEIQALQEEVERD 178          
BLAST of EWM22472.1 vs. NCBI_GenBank
Match: gi|551644239|ref|XP_005824911.1| (hypothetical protein GUITHDRAFT_165340 [Guillardia theta CCMP2712] >gi|428168993|gb|EKX37931.1| hypothetical protein GUITHDRAFT_165340 [Guillardia theta CCMP2712])

HSP 1 Score: 105.916 bits (263), Expect = 1.788e-25
Identity = 57/109 (52.29%), Postives = 76/109 (69.72%), Query Frame = 0
Query:   98 EKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVA-WTFTYIFRVANKDMTYAKQLKNYEDAVLAKRLEELEEEEVEALMEEVE 205
            E++N  P L  ++TRGG +  S ++  A F  Y   TA+  D LQAG  I+    +G+ A WTF+YIFRV  KDMTY+KQLK YEDAV+AKR EEL+E+EVEAL+ ++E
Sbjct:    9 EESNVSPWLR-LDTRGGAIVWSIILLVAPFLAYGPVTAVVGDELQAGRIIAAVYMVGLCAAWTFSYIFRVGTKDMTYSKQLKAYEDAVIAKRFEELQEDEVEALISDLE 116          
The following BLAST results are available for this feature:
BLAST of EWM22472.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102978|gb|EWM22472.1|8.476e-155100.00Protein of unknown function DUF3007 [Nannochlorops... [more]
gi|553184240|ref|XP_005854057.1|2.682e-141100.00hypothetical protein NGA_0486600 [Nannochloropsis ... [more]
gi|1210532114|dbj|GAX09273.1|5.248e-3155.86hypothetical protein FisN_17Lu018 [Fistulifera sol... [more]
gi|1072231634|gb|OEU16366.1|1.183e-3050.41hypothetical protein FRACYDRAFT_185821 [Fragilario... [more]
gi|551562018|ref|XP_005767818.1|1.045e-2945.27hypothetical protein EMIHUDRAFT_427662 [Emiliania ... [more]
gi|551552124|ref|XP_005763457.1|1.045e-2945.27hypothetical protein EMIHUDRAFT_419792 [Emiliania ... [more]
gi|298709100|emb|CBJ31047.1|4.175e-2952.73conserved unknown protein [Ectocarpus siliculosus][more]
gi|397576293|gb|EJK50173.1|9.827e-2746.90hypothetical protein THAOC_30885, partial [Thalass... [more]
gi|219119239|ref|XP_002180384.1|2.070e-2649.15predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|551644239|ref|XP_005824911.1|1.788e-2552.29hypothetical protein GUITHDRAFT_165340 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8192rna8192Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications