EWM22511.1, cds8161 (CDS) Nannochloropsis gaditana

Overview
NameEWM22511.1
Unique Namecds8161
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:42964..42993 -
Alignment locationKK037248.1:42123..42722 -
Alignment locationKK037248.1:41689..41866 -

Link to JBrowse

Properties
Property NameValue
Start range41689
Start range.
Protein idEWM22511.1
Productcop9 signalosome complex subunit 4
Partialtrue
Orig transcript idgnl|cribi|Naga_101124g2.2593.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:42964..42993 -
KK037248.1supercontigKK037248.1:42123..42722 -
KK037248.1supercontigKK037248.1:41689..41866 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|585103021|gb|EWM22511.1| (cop9 signalosome complex subunit 4, partial [Nannochloropsis gaditana])

HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query:    1 MVAVHAAVAEIQSMASQADRTSRQKCKYTELLTELMDSFIPPSSSSAPTTSLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            MVAVHAAVAEIQSMASQADRTSRQKCKYTELLTELMDSFIPPSSSSAPTTSLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ
Sbjct:    1 MVAVHAAVAEIQSMASQADRTSRQKCKYTELLTELMDSFIPPSSSSAPTTSLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|673030614|ref|XP_008869268.1| (hypothetical protein H310_06122 [Aphanomyces invadans] >gi|574475663|gb|ETW02663.1| hypothetical protein H310_06122 [Aphanomyces invadans])

HSP 1 Score: 174.096 bits (440), Expect = 2.483e-48
Identity = 97/222 (43.69%), Postives = 144/222 (64.86%), Query Frame = 0
Query:   51 SLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERL-PRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV-TDYW-VQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            + + F S +KA+ DH L   V   +SR +  HL  S+L R+ P    +          +D   Y L +  S   +FEEAD ++RE L + L  +  Y  AA  LA +N+++S+R  ++D KA+ YVKIAE +L ED+ V+AE ++NRAS ++ AV ++ W ++LRY+V+YA++LDA RKFL+AALRY+E SQ++  EV  ++L+ LLG+AVTCAIL  AGPQ
Sbjct:   30 TFLDFAS-LKAIFDHALDESVQLAISRGLLTHLASSVLVRIDPEAHAWK---------KDFLVYCLAKIKSRILSFEEADVALREILCDLLMDEEEYIEAAKTLAAINLESSSRQYTDDEKAEKYVKIAELYLQEDETVDAENYINRASRVIHAVGSNNWPLKLRYQVSYARILDAKRKFLDAALRYYEFSQSKPDEVDPDDLMQLLGKAVTCAILAAAGPQ 241          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|1173947984|gb|OQR96149.1| (COP9 signalosome complex subunit [Achlya hypogyna])

HSP 1 Score: 171.014 bits (432), Expect = 3.485e-47
Identity = 97/213 (45.54%), Postives = 141/213 (66.20%), Query Frame = 0
Query:   59 MKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            +KALVDH+L+  V  +V+R+V     Q+L ER+          E     +DV  YAL+Q      +FEE D  +RE L +    +  Y  AA  LA +N+++S R  S+D KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV  +++ ++LRY+V+YA++LD+ RKFL+AALRY+E SQ++  EV  ++LL LLG+A+TCAIL  AGPQ
Sbjct:   37 LKALVDHVLNEDVQLVVARTVLGQFVQAL-ERI--------DSEVHGWKKDVVIYALQQIKPRILSFEETDVVLRERLCDLYMEEEEYIEAAKALAAINLESSARQYSDDQKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVDASNWALKLRYQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLQLLGKAMTCAILAAAGPQ 240          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|676383745|ref|XP_009035151.1| (hypothetical protein AURANDRAFT_11912, partial [Aureococcus anophagefferens] >gi|323454476|gb|EGB10346.1| hypothetical protein AURANDRAFT_11912, partial [Aureococcus anophagefferens])

HSP 1 Score: 169.474 bits (428), Expect = 9.627e-47
Identity = 97/219 (44.29%), Postives = 144/219 (65.75%), Query Frame = 0
Query:   54 SFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTD--YW-VQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            S V  ++A + HLLS  V  +VSR+V AH  +++    P +            L+ +  +A+       Q+FE+AD ++R  L++   A+G Y+ AA  L G++++  ++P ++  KA  YVKIAETFL +D++V+AE +VNRASGLM AV    +W +QLRYRVT A+ LDA RKFL+A++RY+ELSQ +  EV +++LL LL +AVTCA+LG AGPQ
Sbjct:   13 SDVGGLQATLTHLLSDAVPQVVSRNVVAHFARAVAAVAPPE-----------RLESICSWAVAAIQPQKQSFEDADHALRHALYDCYLAEGSYKEAACTLGGIDVETCSKPYADLDKAALYVKIAETFLEDDESVDAETYVNRASGLMHAVDGKVHWALQLRYRVTLARTLDARRKFLDASMRYYELSQARHEEVNQDDLLALLSKAVTCALLGNAGPQ 220          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|1173955038|gb|OQS02115.1| (COP9 signalosome complex subunit [Thraustotheca clavata])

HSP 1 Score: 165.236 bits (417), Expect = 5.467e-45
Identity = 93/220 (42.27%), Postives = 145/220 (65.91%), Query Frame = 0
Query:   53 VSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERL-PRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            ++  S ++++V+H+L+  V  +++R+V AH  Q+L ER+ P    +           D+ ++ L+       +FEE D  +RE L E L  +  Y  AA  LA +N+++S R  ++D KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV  +++ ++LRY+V+YA++LD+ RKFL+AALRY+E SQ++  EV  E+LL LLG+A TCAIL  AGPQ
Sbjct:   29 ITNASALQSIVEHVLNEDVQLVIARAVLAHFIQAL-ERIDPEAHSWKT---------DLIKFTLQTIKPRIMSFEETDVVLREQLCEVLIEEEEYIEAAKTLAAINLESSARQYTDDQKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVDSSNWALKLRYQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPEDLLQLLGKATTCAILAAAGPQ 238          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|698787134|ref|XP_009826599.1| (hypothetical protein H257_03969 [Aphanomyces astaci] >gi|574117688|gb|ETV83169.1| hypothetical protein H257_03969 [Aphanomyces astaci])

HSP 1 Score: 164.466 bits (415), Expect = 1.045e-44
Identity = 93/216 (43.06%), Postives = 136/216 (62.96%), Query Frame = 0
Query:   57 SEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERL-PRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            + +KA  DH L   V   VSR +  H   S+L R+ P    +          +D+  Y L +      +FEEAD  +RE L + L  +  Y  AA  LA +N+++S R  +++ KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV  +++ ++LRY+V+YA++LDA RKFL+AALRY+E SQ++  EV  ++LL LL +AVTCAIL  AGPQ
Sbjct:   35 TSLKATFDHSLDESVQLAVSRGLLTHFASSVLVRIDPDVHAWK---------KDLLAYCLNKIKPRILSFEEADIVLREVLCDLLMDEEDYIEAAKTLAAINLESSARQYTDEEKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVGQSNWPLKLRYQVSYARILDAKRKFLDAALRYYEFSQSKPDEVDPDDLLQLLSKAVTCAILAAAGPQ 241          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|669156044|ref|XP_008613584.1| (hypothetical protein SDRG_09429 [Saprolegnia diclina VS20] >gi|530734656|gb|EQC32898.1| hypothetical protein SDRG_09429 [Saprolegnia diclina VS20])

HSP 1 Score: 162.54 bits (410), Expect = 6.391e-44
Identity = 89/214 (41.59%), Postives = 143/214 (66.82%), Query Frame = 0
Query:   59 MKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQ-DVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            +K+L++H+L+  V  +V+R+V +   Q++       G+    + ++ A + D+  +AL+Q      +FEE D  +RE L +    +  Y  AA  LA +N+++S R  S+D KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV  +++ +++RY+V+YA++LD+ RKFL+AALRY+E SQ++  EV  ++LL LLG+A TCAIL  AGPQ
Sbjct:   37 LKSLLEHVLTDDVQLVVARTVLSQFAQAV-------GRI---DTEVHAWKKDLLVFALQQIKPRILSFEETDVVLREQLCDLFMEEEEYIEAAKTLAAINLESSARQYSDDEKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVDASNWALKIRYQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLQLLGKATTCAILAAAGPQ 240          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|953503229|emb|CEG35997.1| (cop8 (constitutive photomorphogenic) homolog [Plasmopara halstedii])

HSP 1 Score: 160.614 bits (405), Expect = 3.813e-43
Identity = 88/215 (40.93%), Postives = 131/215 (60.93%), Query Frame = 0
Query:   59 MKALVDHLLSPQVSTLVSRSVFAHLGQSL----LERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            +KALV H+L   V  ++SR+V  HL   +    ++  P + ++ C             + L +      +FEE D   RE L      +  Y  AA  LA +N+++STR  ++  K + YVKIAE +L +D+ V+AE F+NRAS  +  + D+ ++LRY+V+YA++LDA RKFL+AALRY+E SQ++  EV  ++LL LLG+AVTCAIL  AGPQ
Sbjct:   38 LKALVTHILGEDVLLVISRAVITHLASVVAGIDVDAHPWKLEFIC-------------FCLAKIKPRILSFEEPDVMFRESLAAMYMDEEEYIEAAKALAAINLESSTRQYTDVEKTEKYVKIAELYLQDDETVDAENFINRASRFIHNIEDWALKLRYQVSYARILDAKRKFLDAALRYYEFSQSKPDEVDPDDLLELLGKAVTCAILASAGPQ 239          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|567945582|gb|ETK71393.1| (hypothetical protein L915_21356, partial [Phytophthora parasitica])

HSP 1 Score: 156.377 bits (394), Expect = 3.939e-43
Identity = 87/218 (39.91%), Postives = 132/218 (60.55%), Query Frame = 0
Query:   56 VSEMKALVDHLLSPQVSTLVSRSVFAHLGQSL----LERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            ++ +K +V HLL   V  ++SR+V  HL   +    ++  P + ++ C             + L +      +FEE D   RE L      +  Y  AA  LA +N+++STR  ++  KA+ YVKIAE +L ED+ V+AE F+NRAS  +  V D+ ++LR++V+YA++LD+ RKFL+AALRY+E SQ++  EV  ++LL LL +AVTCAIL  AGPQ
Sbjct:   35 LASLKTIVIHLLGEDVLLVISRAVITHLASVVAGIDVDAHPWKLEFIC-------------FCLAKIKPRILSFEEPDVMFRESLAAMYMDEEEYIEAAKALAAINLESSTRQYTDVEKAEKYVKIAELYLQEDETVDAENFINRASRFIHNVEDWALKLRFQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLELLSKAVTCAILASAGPQ 239          
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|570965322|gb|ETP28441.1| (hypothetical protein F442_22263, partial [Phytophthora parasitica P10297])

HSP 1 Score: 156.762 bits (395), Expect = 4.083e-43
Identity = 87/218 (39.91%), Postives = 132/218 (60.55%), Query Frame = 0
Query:   56 VSEMKALVDHLLSPQVSTLVSRSVFAHLGQSL----LERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
            ++ +K +V HLL   V  ++SR+V  HL   +    ++  P + ++ C             + L +      +FEE D   RE L      +  Y  AA  LA +N+++STR  ++  KA+ YVKIAE +L ED+ V+AE F+NRAS  +  V D+ ++LR++V+YA++LD+ RKFL+AALRY+E SQ++  EV  ++LL LL +AVTCAIL  AGPQ
Sbjct:   35 LASLKTIVIHLLGEDVLLVISRAVITHLASVVAGIDVDAHPWKLEFIC-------------FCLAKIKPRILSFEEPDVMFRESLAAMYMDEEEYIEAAKALAAINLESSTRQYTDVEKAEKYVKIAELYLQEDETVDAENFINRASRFIHNVEDWALKLRFQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLELLSKAVTCAILASAGPQ 239          
The following BLAST results are available for this feature:
BLAST of EWM22511.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103021|gb|EWM22511.1|0.000e+0100.00cop9 signalosome complex subunit 4, partial [Nanno... [more]
gi|673030614|ref|XP_008869268.1|2.483e-4843.69hypothetical protein H310_06122 [Aphanomyces invad... [more]
gi|1173947984|gb|OQR96149.1|3.485e-4745.54COP9 signalosome complex subunit [Achlya hypogyna][more]
gi|676383745|ref|XP_009035151.1|9.627e-4744.29hypothetical protein AURANDRAFT_11912, partial [Au... [more]
gi|1173955038|gb|OQS02115.1|5.467e-4542.27COP9 signalosome complex subunit [Thraustotheca cl... [more]
gi|698787134|ref|XP_009826599.1|1.045e-4443.06hypothetical protein H257_03969 [Aphanomyces astac... [more]
gi|669156044|ref|XP_008613584.1|6.391e-4441.59hypothetical protein SDRG_09429 [Saprolegnia dicli... [more]
gi|953503229|emb|CEG35997.1|3.813e-4340.93cop8 (constitutive photomorphogenic) homolog [Plas... [more]
gi|567945582|gb|ETK71393.1|3.939e-4339.91hypothetical protein L915_21356, partial [Phytopht... [more]
gi|570965322|gb|ETP28441.1|4.083e-4339.91hypothetical protein F442_22263, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8185rna8185Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications