EWM22511.1, cds8161 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|585103021|gb|EWM22511.1| (cop9 signalosome complex subunit 4, partial [Nannochloropsis gaditana]) HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query: 1 MVAVHAAVAEIQSMASQADRTSRQKCKYTELLTELMDSFIPPSSSSAPTTSLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
MVAVHAAVAEIQSMASQADRTSRQKCKYTELLTELMDSFIPPSSSSAPTTSLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ
Sbjct: 1 MVAVHAAVAEIQSMASQADRTSRQKCKYTELLTELMDSFIPPSSSSAPTTSLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|673030614|ref|XP_008869268.1| (hypothetical protein H310_06122 [Aphanomyces invadans] >gi|574475663|gb|ETW02663.1| hypothetical protein H310_06122 [Aphanomyces invadans]) HSP 1 Score: 174.096 bits (440), Expect = 2.483e-48 Identity = 97/222 (43.69%), Postives = 144/222 (64.86%), Query Frame = 0
Query: 51 SLVSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERL-PRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV-TDYW-VQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
+ + F S +KA+ DH L V +SR + HL S+L R+ P + +D Y L + S +FEEAD ++RE L + L + Y AA LA +N+++S+R ++D KA+ YVKIAE +L ED+ V+AE ++NRAS ++ AV ++ W ++LRY+V+YA++LDA RKFL+AALRY+E SQ++ EV ++L+ LLG+AVTCAIL AGPQ
Sbjct: 30 TFLDFAS-LKAIFDHALDESVQLAISRGLLTHLASSVLVRIDPEAHAWK---------KDFLVYCLAKIKSRILSFEEADVALREILCDLLMDEEEYIEAAKTLAAINLESSSRQYTDDEKAEKYVKIAELYLQEDETVDAENYINRASRVIHAVGSNNWPLKLRYQVSYARILDAKRKFLDAALRYYEFSQSKPDEVDPDDLMQLLGKAVTCAILAAAGPQ 241
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|1173947984|gb|OQR96149.1| (COP9 signalosome complex subunit [Achlya hypogyna]) HSP 1 Score: 171.014 bits (432), Expect = 3.485e-47 Identity = 97/213 (45.54%), Postives = 141/213 (66.20%), Query Frame = 0
Query: 59 MKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
+KALVDH+L+ V +V+R+V Q+L ER+ E +DV YAL+Q +FEE D +RE L + + Y AA LA +N+++S R S+D KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV +++ ++LRY+V+YA++LD+ RKFL+AALRY+E SQ++ EV ++LL LLG+A+TCAIL AGPQ
Sbjct: 37 LKALVDHVLNEDVQLVVARTVLGQFVQAL-ERI--------DSEVHGWKKDVVIYALQQIKPRILSFEETDVVLRERLCDLYMEEEEYIEAAKALAAINLESSARQYSDDQKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVDASNWALKLRYQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLQLLGKAMTCAILAAAGPQ 240
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|676383745|ref|XP_009035151.1| (hypothetical protein AURANDRAFT_11912, partial [Aureococcus anophagefferens] >gi|323454476|gb|EGB10346.1| hypothetical protein AURANDRAFT_11912, partial [Aureococcus anophagefferens]) HSP 1 Score: 169.474 bits (428), Expect = 9.627e-47 Identity = 97/219 (44.29%), Postives = 144/219 (65.75%), Query Frame = 0
Query: 54 SFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTD--YW-VQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
S V ++A + HLLS V +VSR+V AH +++ P + L+ + +A+ Q+FE+AD ++R L++ A+G Y+ AA L G++++ ++P ++ KA YVKIAETFL +D++V+AE +VNRASGLM AV +W +QLRYRVT A+ LDA RKFL+A++RY+ELSQ + EV +++LL LL +AVTCA+LG AGPQ
Sbjct: 13 SDVGGLQATLTHLLSDAVPQVVSRNVVAHFARAVAAVAPPE-----------RLESICSWAVAAIQPQKQSFEDADHALRHALYDCYLAEGSYKEAACTLGGIDVETCSKPYADLDKAALYVKIAETFLEDDESVDAETYVNRASGLMHAVDGKVHWALQLRYRVTLARTLDARRKFLDASMRYYELSQARHEEVNQDDLLALLSKAVTCALLGNAGPQ 220
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|1173955038|gb|OQS02115.1| (COP9 signalosome complex subunit [Thraustotheca clavata]) HSP 1 Score: 165.236 bits (417), Expect = 5.467e-45 Identity = 93/220 (42.27%), Postives = 145/220 (65.91%), Query Frame = 0
Query: 53 VSFVSEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERL-PRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
++ S ++++V+H+L+ V +++R+V AH Q+L ER+ P + D+ ++ L+ +FEE D +RE L E L + Y AA LA +N+++S R ++D KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV +++ ++LRY+V+YA++LD+ RKFL+AALRY+E SQ++ EV E+LL LLG+A TCAIL AGPQ
Sbjct: 29 ITNASALQSIVEHVLNEDVQLVIARAVLAHFIQAL-ERIDPEAHSWKT---------DLIKFTLQTIKPRIMSFEETDVVLREQLCEVLIEEEEYIEAAKTLAAINLESSARQYTDDQKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVDSSNWALKLRYQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPEDLLQLLGKATTCAILAAAGPQ 238
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|698787134|ref|XP_009826599.1| (hypothetical protein H257_03969 [Aphanomyces astaci] >gi|574117688|gb|ETV83169.1| hypothetical protein H257_03969 [Aphanomyces astaci]) HSP 1 Score: 164.466 bits (415), Expect = 1.045e-44 Identity = 93/216 (43.06%), Postives = 136/216 (62.96%), Query Frame = 0
Query: 57 SEMKALVDHLLSPQVSTLVSRSVFAHLGQSLLERL-PRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
+ +KA DH L V VSR + H S+L R+ P + +D+ Y L + +FEEAD +RE L + L + Y AA LA +N+++S R +++ KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV +++ ++LRY+V+YA++LDA RKFL+AALRY+E SQ++ EV ++LL LL +AVTCAIL AGPQ
Sbjct: 35 TSLKATFDHSLDESVQLAVSRGLLTHFASSVLVRIDPDVHAWK---------KDLLAYCLNKIKPRILSFEEADIVLREVLCDLLMDEEDYIEAAKTLAAINLESSARQYTDEEKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVGQSNWPLKLRYQVSYARILDAKRKFLDAALRYYEFSQSKPDEVDPDDLLQLLSKAVTCAILAAAGPQ 241
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|669156044|ref|XP_008613584.1| (hypothetical protein SDRG_09429 [Saprolegnia diclina VS20] >gi|530734656|gb|EQC32898.1| hypothetical protein SDRG_09429 [Saprolegnia diclina VS20]) HSP 1 Score: 162.54 bits (410), Expect = 6.391e-44 Identity = 89/214 (41.59%), Postives = 143/214 (66.82%), Query Frame = 0
Query: 59 MKALVDHLLSPQVSTLVSRSVFAHLGQSLLERLPRQGKYACSEEQLQALQ-DVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAV--TDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
+K+L++H+L+ V +V+R+V + Q++ G+ + ++ A + D+ +AL+Q +FEE D +RE L + + Y AA LA +N+++S R S+D KA+ YVKIAE +L ED+ V+AE F+NRAS ++ AV +++ +++RY+V+YA++LD+ RKFL+AALRY+E SQ++ EV ++LL LLG+A TCAIL AGPQ
Sbjct: 37 LKSLLEHVLTDDVQLVVARTVLSQFAQAV-------GRI---DTEVHAWKKDLLVFALQQIKPRILSFEETDVVLREQLCDLFMEEEEYIEAAKTLAAINLESSARQYSDDEKAEKYVKIAELYLQEDETVDAENFINRASRVIHAVDASNWALKIRYQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLQLLGKATTCAILAAAGPQ 240
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|953503229|emb|CEG35997.1| (cop8 (constitutive photomorphogenic) homolog [Plasmopara halstedii]) HSP 1 Score: 160.614 bits (405), Expect = 3.813e-43 Identity = 88/215 (40.93%), Postives = 131/215 (60.93%), Query Frame = 0
Query: 59 MKALVDHLLSPQVSTLVSRSVFAHLGQSL----LERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
+KALV H+L V ++SR+V HL + ++ P + ++ C + L + +FEE D RE L + Y AA LA +N+++STR ++ K + YVKIAE +L +D+ V+AE F+NRAS + + D+ ++LRY+V+YA++LDA RKFL+AALRY+E SQ++ EV ++LL LLG+AVTCAIL AGPQ
Sbjct: 38 LKALVTHILGEDVLLVISRAVITHLASVVAGIDVDAHPWKLEFIC-------------FCLAKIKPRILSFEEPDVMFRESLAAMYMDEEEYIEAAKALAAINLESSTRQYTDVEKTEKYVKIAELYLQDDETVDAENFINRASRFIHNIEDWALKLRYQVSYARILDAKRKFLDAALRYYEFSQSKPDEVDPDDLLELLGKAVTCAILASAGPQ 239
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|567945582|gb|ETK71393.1| (hypothetical protein L915_21356, partial [Phytophthora parasitica]) HSP 1 Score: 156.377 bits (394), Expect = 3.939e-43 Identity = 87/218 (39.91%), Postives = 132/218 (60.55%), Query Frame = 0
Query: 56 VSEMKALVDHLLSPQVSTLVSRSVFAHLGQSL----LERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
++ +K +V HLL V ++SR+V HL + ++ P + ++ C + L + +FEE D RE L + Y AA LA +N+++STR ++ KA+ YVKIAE +L ED+ V+AE F+NRAS + V D+ ++LR++V+YA++LD+ RKFL+AALRY+E SQ++ EV ++LL LL +AVTCAIL AGPQ
Sbjct: 35 LASLKTIVIHLLGEDVLLVISRAVITHLASVVAGIDVDAHPWKLEFIC-------------FCLAKIKPRILSFEEPDVMFRESLAAMYMDEEEYIEAAKALAAINLESSTRQYTDVEKAEKYVKIAELYLQEDETVDAENFINRASRFIHNVEDWALKLRFQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLELLSKAVTCAILASAGPQ 239
BLAST of EWM22511.1 vs. NCBI_GenBank
Match: gi|570965322|gb|ETP28441.1| (hypothetical protein F442_22263, partial [Phytophthora parasitica P10297]) HSP 1 Score: 156.762 bits (395), Expect = 4.083e-43 Identity = 87/218 (39.91%), Postives = 132/218 (60.55%), Query Frame = 0
Query: 56 VSEMKALVDHLLSPQVSTLVSRSVFAHLGQSL----LERLPRQGKYACSEEQLQALQDVAEYALEQGGSHTQAFEEADASVREFLFEHLKAQGCYRSAASVLAGMNMDASTRPLSEDAKADTYVKIAETFLVEDQAVEAEAFVNRASGLMEAVTDYWVQLRYRVTYAKVLDANRKFLEAALRYHELSQTQRREVPEEELLLLLGRAVTCAILGKAGPQ 269
++ +K +V HLL V ++SR+V HL + ++ P + ++ C + L + +FEE D RE L + Y AA LA +N+++STR ++ KA+ YVKIAE +L ED+ V+AE F+NRAS + V D+ ++LR++V+YA++LD+ RKFL+AALRY+E SQ++ EV ++LL LL +AVTCAIL AGPQ
Sbjct: 35 LASLKTIVIHLLGEDVLLVISRAVITHLASVVAGIDVDAHPWKLEFIC-------------FCLAKIKPRILSFEEPDVMFRESLAAMYMDEEEYIEAAKALAAINLESSTRQYTDVEKAEKYVKIAELYLQEDETVDAENFINRASRFIHNVEDWALKLRFQVSYARILDSKRKFLDAALRYYEFSQSKPDEVDPDDLLELLSKAVTCAILASAGPQ 239 The following BLAST results are available for this feature:
BLAST of EWM22511.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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