EWM22513.1, cds8160 (CDS) Nannochloropsis gaditana

Overview
NameEWM22513.1
Unique Namecds8160
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:41280..41390 -
Alignment locationKK037248.1:40674..40973 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22513.1
Productcop9 signalosome complex subunit 4
Orig transcript idgnl|cribi|Naga_102065g1.2229.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:41280..41390 -
KK037248.1supercontigKK037248.1:40674..40973 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR000717PCI_dom
Homology
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|585103024|gb|EWM22513.1| (cop9 signalosome complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 267.314 bits (682), Expect = 1.740e-90
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVLIGE 136
            MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVLIGE
Sbjct:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVLIGE 136          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|545376300|ref|XP_005652253.1| (hypothetical protein COCSUDRAFT_45959 [Coccomyxa subellipsoidea C-169] >gi|384254235|gb|EIE27709.1| hypothetical protein COCSUDRAFT_45959 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 127.872 bits (320), Expect = 1.196e-32
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 0
Query:    4 FAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAG 126
            FAE LQ HQ+  T+DG T+LE+A++EHN+ AAS++Y NI  +ELG+LL +    AE+VA+RMI EGRL+G IDQ +GLLHF+   EG             L+ WDE+IA  C ++N+IL+ A 
Sbjct:  282 FAEGLQAHQKAVTADGTTVLERAVVEHNLAAASRLYTNIFFAELGQLLGVPPASAEKVASRMITEGRLQGSIDQVDGLLHFDSDTEG-------------LKQWDEQIASVCNQLNSILDSAA 391          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|1009134725|ref|XP_015884603.1| (PREDICTED: COP9 signalosome complex subunit 4 [Ziziphus jujuba])

HSP 1 Score: 124.405 bits (311), Expect = 2.501e-31
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    4 FAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGK 127
            FAEVL+ HQ+    D FT+L++A+IEHN+++ASK+Y NIR  ELG LL IA  +AE++A+RMI E R++G IDQ + ++HFE+  E              LQ WD++I G CQ +N +L+   K
Sbjct:  280 FAEVLKAHQKALLPDNFTVLDRAMIEHNLLSASKLYTNIRFDELGTLLGIAPHKAEKIASRMIYEDRMRGSIDQVQAVIHFEDDTEE-------------LQQWDQQIVGLCQALNDVLDSMAK 390          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|298713145|emb|CBJ26901.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.79 bits (312), Expect = 2.997e-31
Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 0
Query:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVL 133
            M  F E L +HQ+  T++G  I E+A++EHN+VA++++Y+N+   ELG LL+I  ++AERVAARMI EGRL+G IDQ EGLL FE         G   E    LQNWDER+   CQ+VN   E  G   P VL
Sbjct:  289 MEAFEESLMDHQKAITAEGLPIPERAVMEHNMVASTRIYENVSFKELGTLLQIPCEQAERVAARMITEGRLRGTIDQVEGLLQFE---------GDHDE----LQNWDERVNILCQKVNNCCETIGNRFPHVL 408          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|1026044837|ref|XP_016568599.1| (PREDICTED: COP9 signalosome complex subunit 4-like [Capsicum annuum])

HSP 1 Score: 122.865 bits (307), Expect = 7.425e-31
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    4 FAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGK 127
            FAE L+ HQ+    D FT+L++A+IEHN+++ASK+Y NI  +ELG LL I   +AE++A+RMI E R++G IDQ EG++HFE+  EG             LQ WD++I G CQ +N +L+   K
Sbjct:  280 FAEELKPHQQALLPDNFTVLDRAMIEHNLLSASKLYTNISFNELGTLLGIPPPKAEKIASRMIFEDRMRGSIDQVEGVIHFEDDTEG-------------LQQWDQQIMGLCQALNDVLDSMAK 390          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|557332417|ref|XP_006039015.1| (PREDICTED: COP9 signalosome complex subunit 4, partial [Alligator sinensis])

HSP 1 Score: 117.087 bits (292), Expect = 1.134e-30
Identity = 56/130 (43.08%), Postives = 86/130 (66.15%), Query Frame = 0
Query:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130
            + EFA +L  HQ+  T+DG +IL++A+IEHN+++ASK+Y+NI   ELG LL+I   +AE++A++MI EGR+ G IDQ +G++HFE      +E          L  WD++I   C +VN +LE+  +T P
Sbjct:   45 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----SREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 160          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|1207836213|gb|OWK13716.1| (hypothetical protein Celaphus_00017337, partial [Cervus elaphus hippelaphus])

HSP 1 Score: 116.316 bits (290), Expect = 1.518e-30
Identity = 56/130 (43.08%), Postives = 86/130 (66.15%), Query Frame = 0
Query:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130
            + EFA +L  HQ+  T+DG +IL++A+IEHN+++ASK+Y+NI   ELG LL+I   +AE++A++MI EGR+ G IDQ +G++HFE      +E          L  WD++I   C +VN +LE+  +T P
Sbjct:   34 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----TREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 149          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|667338647|ref|XP_008561625.1| (PREDICTED: COP9 signalosome complex subunit 4, partial [Galeopterus variegatus])

HSP 1 Score: 116.316 bits (290), Expect = 1.925e-30
Identity = 56/130 (43.08%), Postives = 86/130 (66.15%), Query Frame = 0
Query:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130
            + EFA +L  HQ+  T+DG +IL++A+IEHN+++ASK+Y+NI   ELG LL+I   +AE++A++MI EGR+ G IDQ +G++HFE      +E          L  WD++I   C +VN +LE+  +T P
Sbjct:   39 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----TREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 154          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|465964543|gb|EMP30381.1| (COP9 signalosome complex subunit 4 [Chelonia mydas])

HSP 1 Score: 117.087 bits (292), Expect = 2.467e-30
Identity = 56/130 (43.08%), Postives = 87/130 (66.92%), Query Frame = 0
Query:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130
            + EFA +L  HQ+  T+DG +IL++A+IEHN+++ASK+Y+NI   ELG LL+I   +AE++A++MI EGR+ G IDQ +G++HFE      +E          L  WD++I   C +VN +LE+  +T+P
Sbjct:   69 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----TREA---------LPTWDKQIQSLCFQVNNLLEKISQTVP 184          
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|557332439|ref|XP_006039026.1| (PREDICTED: COP9 signalosome complex subunit 4-like [Alligator sinensis])

HSP 1 Score: 115.546 bits (288), Expect = 3.468e-30
Identity = 55/130 (42.31%), Postives = 85/130 (65.38%), Query Frame = 0
Query:    1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130
            + EFA +L  HQ+  T+DG +IL++A+IEHN+++ASK+Y+NI   ELG LL+I   +AE++A++MI E R+ G IDQ +G++HFE      +E          L  WD++I   C +VN +LE+  +T P
Sbjct:   34 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITESRMNGFIDQIDGIVHFE-----SREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 149          
The following BLAST results are available for this feature:
BLAST of EWM22513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103024|gb|EWM22513.1|1.740e-90100.00cop9 signalosome complex subunit 4 [Nannochloropsi... [more]
gi|545376300|ref|XP_005652253.1|1.196e-3249.59hypothetical protein COCSUDRAFT_45959 [Coccomyxa s... [more]
gi|1009134725|ref|XP_015884603.1|2.501e-3145.97PREDICTED: COP9 signalosome complex subunit 4 [Ziz... [more]
gi|298713145|emb|CBJ26901.1|2.997e-3148.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|1026044837|ref|XP_016568599.1|7.425e-3145.97PREDICTED: COP9 signalosome complex subunit 4-like... [more]
gi|557332417|ref|XP_006039015.1|1.134e-3043.08PREDICTED: COP9 signalosome complex subunit 4, par... [more]
gi|1207836213|gb|OWK13716.1|1.518e-3043.08hypothetical protein Celaphus_00017337, partial [C... [more]
gi|667338647|ref|XP_008561625.1|1.925e-3043.08PREDICTED: COP9 signalosome complex subunit 4, par... [more]
gi|465964543|gb|EMP30381.1|2.467e-3043.08COP9 signalosome complex subunit 4 [Chelonia mydas... [more]
gi|557332439|ref|XP_006039026.1|3.468e-3042.31PREDICTED: COP9 signalosome complex subunit 4-like... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8184rna8184Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications