EWM29855.1, cds815 (CDS) Nannochloropsis gaditana

Overview
NameEWM29855.1
Unique Namecds815
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:485387..489313 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29855.1
Productnegative elongation factor b-like protein
Orig transcript idgnl|cribi|Naga_100017g6.353.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:485387..489313 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0045892negative regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR010405COBRA1
IPR001487Bromodomain
Homology
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|585112436|gb|EWM29855.1| (negative elongation factor b-like protein [Nannochloropsis gaditana])

HSP 1 Score: 2629.74 bits (6815), Expect = 0.000e+0
Identity = 1308/1308 (100.00%), Postives = 1308/1308 (100.00%), Query Frame = 0
Query:    1 MDTGRGADGNPTGGDTKPVLLPPVASKKSPAGQQPFPKLKVTTPATSTPQDTPLRLSMSSDAVQDSKRDVPIAAGKKSLSSLSEKVSLPEAASGTGIALVDKYKANVDDASKKRGLPALRIGSIEAGRAATEDKKKKIKLVAQAGKSGSQPIVPALHLKNIAPGNSSGTASVPTILSGRESVKSRPVVISTDSEAAPVPALHVTASAHIPTPCPFPPVSAPSQAAVVASSPVNDRSSPAMAPLPPPSPSSAPMAGSSDPALHEEATPVPAIPDVASHVKVQPVGSPKSKELVPARGPPVGNAAGRMLIKRGLRAGDPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSKGDPTLCTLFADFQVQLAHVRSGRAAVISRLTHLARALEEWVKAGRVEAKALAQVQVHLRAMLSSSGTGAGRGVTPMSLSSKKEKKRKEADITSSGLTLKLPRAALSTPVAEKSWAKIPTLEQALEEGMGYLLKLDAPTRWFAKPVLELWPQIQEAYLAVVPHPMDLESMRKRVKASVGGVGEKERGGTAGYSTFAAFDSDAERVFDNCMAFNPPGSAFHSGAERMKKAWGKFKVKFEKTDVKRAMDRKKGAVGAGGLGDGSGLVTKATTSTFVGAGDEAELLSAAGRGTDKARDPTVPEALPGRPRVEAPTWGHALMLLADPCVLQVLGKTLKQELDEVFRSQGLPKDHPRVPSLLQLLYLGLDARRQLALVRLKTKAGVPPPPPPTEPLHKKGNKKGKTAPSPPELPPCFSIPDARVSFWGFGDKEGEPAAENDVQEAVRTVLPSLLEVNAYVKVANKYATATDGWEGQPHDKDEIEGKMLESVGRLYRACKARQPSPLLLCVLTHALCHSLATGDDDRTTPLAKTLAALLDHLNRKRRSEMTLALPDMQDRALWIGLASAGLLRVPKKKNKAALAGEKANRAGATRAGPVGAGMPAVGGAGVGADRKAHATASTSASARPPLEPELRDLILGIFVNQLPFACSPRSISFCHEQVLRLLLGWMARGALEPPKGKEGREEGKDGIGKRTVRNWVEGIVQGVGGHKAMWEVWEKEEFKCLRRQYERLFEATPWARGVVLGEGGAGVVSESAGPDGVRADESEQQKKMEPLGGKAADDK 1308
            MDTGRGADGNPTGGDTKPVLLPPVASKKSPAGQQPFPKLKVTTPATSTPQDTPLRLSMSSDAVQDSKRDVPIAAGKKSLSSLSEKVSLPEAASGTGIALVDKYKANVDDASKKRGLPALRIGSIEAGRAATEDKKKKIKLVAQAGKSGSQPIVPALHLKNIAPGNSSGTASVPTILSGRESVKSRPVVISTDSEAAPVPALHVTASAHIPTPCPFPPVSAPSQAAVVASSPVNDRSSPAMAPLPPPSPSSAPMAGSSDPALHEEATPVPAIPDVASHVKVQPVGSPKSKELVPARGPPVGNAAGRMLIKRGLRAGDPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSKGDPTLCTLFADFQVQLAHVRSGRAAVISRLTHLARALEEWVKAGRVEAKALAQVQVHLRAMLSSSGTGAGRGVTPMSLSSKKEKKRKEADITSSGLTLKLPRAALSTPVAEKSWAKIPTLEQALEEGMGYLLKLDAPTRWFAKPVLELWPQIQEAYLAVVPHPMDLESMRKRVKASVGGVGEKERGGTAGYSTFAAFDSDAERVFDNCMAFNPPGSAFHSGAERMKKAWGKFKVKFEKTDVKRAMDRKKGAVGAGGLGDGSGLVTKATTSTFVGAGDEAELLSAAGRGTDKARDPTVPEALPGRPRVEAPTWGHALMLLADPCVLQVLGKTLKQELDEVFRSQGLPKDHPRVPSLLQLLYLGLDARRQLALVRLKTKAGVPPPPPPTEPLHKKGNKKGKTAPSPPELPPCFSIPDARVSFWGFGDKEGEPAAENDVQEAVRTVLPSLLEVNAYVKVANKYATATDGWEGQPHDKDEIEGKMLESVGRLYRACKARQPSPLLLCVLTHALCHSLATGDDDRTTPLAKTLAALLDHLNRKRRSEMTLALPDMQDRALWIGLASAGLLRVPKKKNKAALAGEKANRAGATRAGPVGAGMPAVGGAGVGADRKAHATASTSASARPPLEPELRDLILGIFVNQLPFACSPRSISFCHEQVLRLLLGWMARGALEPPKGKEGREEGKDGIGKRTVRNWVEGIVQGVGGHKAMWEVWEKEEFKCLRRQYERLFEATPWARGVVLGEGGAGVVSESAGPDGVRADESEQQKKMEPLGGKAADDK
Sbjct:    1 MDTGRGADGNPTGGDTKPVLLPPVASKKSPAGQQPFPKLKVTTPATSTPQDTPLRLSMSSDAVQDSKRDVPIAAGKKSLSSLSEKVSLPEAASGTGIALVDKYKANVDDASKKRGLPALRIGSIEAGRAATEDKKKKIKLVAQAGKSGSQPIVPALHLKNIAPGNSSGTASVPTILSGRESVKSRPVVISTDSEAAPVPALHVTASAHIPTPCPFPPVSAPSQAAVVASSPVNDRSSPAMAPLPPPSPSSAPMAGSSDPALHEEATPVPAIPDVASHVKVQPVGSPKSKELVPARGPPVGNAAGRMLIKRGLRAGDPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSKGDPTLCTLFADFQVQLAHVRSGRAAVISRLTHLARALEEWVKAGRVEAKALAQVQVHLRAMLSSSGTGAGRGVTPMSLSSKKEKKRKEADITSSGLTLKLPRAALSTPVAEKSWAKIPTLEQALEEGMGYLLKLDAPTRWFAKPVLELWPQIQEAYLAVVPHPMDLESMRKRVKASVGGVGEKERGGTAGYSTFAAFDSDAERVFDNCMAFNPPGSAFHSGAERMKKAWGKFKVKFEKTDVKRAMDRKKGAVGAGGLGDGSGLVTKATTSTFVGAGDEAELLSAAGRGTDKARDPTVPEALPGRPRVEAPTWGHALMLLADPCVLQVLGKTLKQELDEVFRSQGLPKDHPRVPSLLQLLYLGLDARRQLALVRLKTKAGVPPPPPPTEPLHKKGNKKGKTAPSPPELPPCFSIPDARVSFWGFGDKEGEPAAENDVQEAVRTVLPSLLEVNAYVKVANKYATATDGWEGQPHDKDEIEGKMLESVGRLYRACKARQPSPLLLCVLTHALCHSLATGDDDRTTPLAKTLAALLDHLNRKRRSEMTLALPDMQDRALWIGLASAGLLRVPKKKNKAALAGEKANRAGATRAGPVGAGMPAVGGAGVGADRKAHATASTSASARPPLEPELRDLILGIFVNQLPFACSPRSISFCHEQVLRLLLGWMARGALEPPKGKEGREEGKDGIGKRTVRNWVEGIVQGVGGHKAMWEVWEKEEFKCLRRQYERLFEATPWARGVVLGEGGAGVVSESAGPDGVRADESEQQKKMEPLGGKAADDK 1308          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|330791263|ref|XP_003283713.1| (hypothetical protein DICPUDRAFT_52489 [Dictyostelium purpureum] >gi|325086336|gb|EGC39727.1| hypothetical protein DICPUDRAFT_52489 [Dictyostelium purpureum])

HSP 1 Score: 111.694 bits (278), Expect = 3.306e-21
Identity = 79/312 (25.32%), Postives = 158/312 (50.64%), Query Frame = 0
Query:  299 VGNAAGRMLIKRGLRAGDPRAFIQRFQEENGL--RGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLR-RIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSK-----GDPTLCTLFADFQVQLAHVRSGRAAVISRLTH-LARALEEWVKAGRVEAKALAQVQVHLRAMLSSSGTGAG 601
            +GN+    ++        P  FI +FQ+ENG+  + +P   P L LLD+  V R ++Y +LL  L+  L+++++   ++++LE+LL  SF Y++  EL+ +P  ++ +L   +P+  L +L+    L E+ P+ VK+Q+W   P LF+  +  ++ +Y+     +     D+   LS+SS+  P           P+KRR+ N  L  +          K+ ++   F+  E++ K     G+  LC L A+  + + H RS      +  +H +A  L+  ++   ++++ + ++Q  L A+ + + +  G
Sbjct:    6 IGNSGAEKILTSLSNTTYPLQFINQFQQENGISKKSLPTVTPVLNLLDLHQVPRGELYLNLLTSLKKDLLNKINTL-NKSELEKLLETSFAYISFEELQEIPMNVMRRLTPEVPTAFLLKLSESEELYEQCPIEVKRQIWLVSPQLFKDKVVPLIHQYIEDSNLIQ----DMNEQLSVSSSSDPVLFAVS--HTLPAKRRENNITLQEIADLF-----GKIPELYQMFL--EHLKKIFADTGNYLLCNLRAEVLMAI-HDRSINEIYDTDGSHNVAWCLDACIRDNNLDSRRVKEIQTSLNAVSNQNSSVLG 302          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|551660643|ref|XP_005833089.1| (hypothetical protein GUITHDRAFT_163104 [Guillardia theta CCMP2712] >gi|428177228|gb|EKX46109.1| hypothetical protein GUITHDRAFT_163104 [Guillardia theta CCMP2712])

HSP 1 Score: 103.219 bits (256), Expect = 5.318e-19
Identity = 57/158 (36.08%), Postives = 90/158 (56.96%), Query Frame = 0
Query:  298 PVGNAAGRMLIKRGLRAGDPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAHP--ALFRRGLGAILEEY 453
            PVG   G  L +    A DPR  I+ F  EN L+  P   PA + LD++G+SR + ++ +L  L+ RL+ +++    + +L  LL   F Y+++PELR +P  + + L ++P   L  LA  P L++ELP+ V++QVW   P  ALFR+    +L  Y
Sbjct:    8 PVGVQGGNALRECLATAKDPRTAIKNFVSENSLQT-PSCSPAQEWLDLMGISRAEQHKEILTRLKDRLLSKVESMSTEKKLA-LLEKCFPYISIPELRDIPLTLFSNLNKVPVSYLVTLAQSPDLVKELPLSVRRQVWANEPDKALFRKEFNGLLNSY 163          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|857978908|emb|CEO95146.1| (hypothetical protein PBRA_003912 [Plasmodiophora brassicae])

HSP 1 Score: 100.138 bits (248), Expect = 9.777e-18
Identity = 55/151 (36.42%), Postives = 83/151 (54.97%), Query Frame = 0
Query:  304 GRMLIKRGLRAGDPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYV 454
            G + I + L   +P   I  FQE NGL  +P +   L+ LD+LG+SR  VY  L   L+ARL+ R  +     Q E LL  SF ++ + ELR +P  ++  + +IP + +D L+ +  LLE LP+ + +QVW  HP L    L  +  E+V
Sbjct:   42 GSLTIHKMLSQHNPVNVIHEFQERNGLH-VPNSGAFLKFLDLLGISRASVYSSLCDKLKARLMQRSSKLA-PGQREILLQESFRFMRIDELREIPIELLCGMDKIPKKYIDSLSTQAALLETLPLSILRQVWVEHPNLLFMKLIPLYNEFV 190          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|1176084267|ref|XP_020612353.1| (negative elongation factor B-like [Orbicella faveolata])

HSP 1 Score: 95.9005 bits (237), Expect = 1.521e-16
Identity = 54/162 (33.33%), Postives = 90/162 (55.56%), Query Frame = 0
Query:  304 GRMLIKRGLRAG---DPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMM 462
            G   I RGL      +   FI+ FQ+EN +  +P  +PAL  LD+  V RLQ   +++ +LR +L++++   + + +L  LL   F ++ V  LR V   ++  L ++P   L++LA  P L E+  + VK+Q+W  H ALF   +G +L +YV  + SV+ 
Sbjct:   11 GTEFILRGLNTAQDFEVVNFIENFQQENSIM-LPSLQPALPFLDLHDVQRLQFNSYVMENLREKLLEQVKHLEVE-KLHSLLDQCFPFIHVAHLRPVVMEVMKYLPKVPEECLEQLANDPKLYEDCSIEVKRQIWVKHHALFGDAVGPLLNQYVEAKYSVLF 170          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|1005432664|ref|XP_015753896.1| (PREDICTED: negative elongation factor B-like [Acropora digitifera])

HSP 1 Score: 95.1301 bits (235), Expect = 2.778e-16
Identity = 63/220 (28.64%), Postives = 113/220 (51.36%), Query Frame = 0
Query:  320 FIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSKGDPTLCTL 539
            F++ FQ+EN +  +P  + AL  LD+ GV RL+  + ++ +LR +L+++L + + + +L+ LL  SF ++ VP LR V   ++  L ++P   L++LA  P L E+  + VK+Q+W  H ALF   +G +L +YV  + +V+            S+ P  S          PSK R++N  +  L   +      +L  +   F+   ++   +   CTL
Sbjct:   30 FVEHFQQENSIM-LPSLQSALPFLDLHGVRRLEFNKFVMDNLREKLLEQLKKLEAE-KLQALLDQSFPFIHVPHLRPVVIEVMKYLPKVPEECLEQLANDPKLYEDCAIEVKRQIWVKHHALFGDAVGPLLNQYVEAKYNVL-----------FSTEPVNSHTFFS----VPSKTRRQNTVVQSLAKMIGK--SLELYNLVLQFLRTLFLRTKEVHYCTL 230          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|66809827|ref|XP_638637.1| (hypothetical protein DDB_G0284195 [Dictyostelium discoideum AX4] >gi|60467253|gb|EAL65286.1| hypothetical protein DDB_G0284195 [Dictyostelium discoideum AX4])

HSP 1 Score: 95.5153 bits (236), Expect = 3.511e-16
Identity = 101/396 (25.51%), Postives = 191/396 (48.23%), Query Frame = 0
Query:  299 VGNAAGRMLIKRGLRAGDPRAFIQRFQEENGL--RGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLR-RIPSRILDRLAARPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSKGDPTLCTLFADFQVQLAHVRSGRAAVISRLTH-LARALEEWVKAGRVEAKALAQVQVHLRAML-----SSSGTGAGRGVTPMSLSS---------KKEKKRKEA---DITSSGLTLKLPRAALSTPVAEKSWAKIPTLEQALEEGMGYLLK---LDAPTR 670
            +GN     ++        P  FI +FQ+ENG+  + +P   P L LLD+  + R  +Y +LL+ L+  L+ +++   ++ +LE+LL  +F Y+   EL+ +P  ++ +L   +P   L +LA    L E+ P+ VK+Q+W  +  LF+  +  ++ +Y+     + +   +   LLS S+T  P  A +      P+KRR+ N  L  +V    T+    L Q+  + I   +   G+  LC L A+  + + H +S      +  +H +A  L+  ++   ++A+ + ++Q +L + +     S+ G  A     P++++          K+  KRK+    D +   LT  L  A  S  + ++S  KIP +++ + +    LL    LD  TR
Sbjct:    6 IGNLGSEKILTSLSTTTYPLQFISQFQQENGISKKSLPTVSPVLNLLDLHQIPRGDLYLNLLSSLKKDLLLKINTL-NKHELEKLLEQTFPYIGFEELQEIPMNVMKRLTPEVPVAFLLKLAEAEELYEQCPIEVKRQIWIVNEELFKEKIKPLINQYI--EDPIFIQDMNEQLLLSSSTTVDPLFAVSHL----PAKRRENNSVLQEMVELFGTK-SPDLYQMFINQIKRSFADSGNYLLCNLRAEILMAI-HDKSIPEIYDTDASHNIAWCLDACIRDNTLDARRIKEIQTNLSSSVHHQNSSTLGDTAMVFANPIAVNCIVRNILIQLKEVVKRKQIPKDDESIKFLTYLLVLALKSHEMIKESKFKIPHVKKHILQTFYPLLATQILDDITR 392          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|1173932760|gb|OQR84672.1| (hypothetical protein ACHHYP_13074 [Achlya hypogyna])

HSP 1 Score: 93.2041 bits (230), Expect = 1.570e-15
Identity = 87/323 (26.93%), Postives = 142/323 (43.96%), Query Frame = 0
Query:  290 ELVPARGPPVGNAAGRMLIKRGLRAGDPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRL-DRCQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAA--RPGLLEELPMRVKQQVWEAHPALFRRGLGAILEEYVRHRASVMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSKGD--------------PTLCTLFADFQVQLAHVRSGRAAVISRLTHLARAL---EEWVKAGRVEAKALAQVQVHLRAM 592
            E   AR   +G+A G  L      A  P   I  FQ+E+GL+   +   +LQLLD+LG  R + ++ LL  L   L+ R+ ++   +AQL +LL  +F YL   ELR VP  I+      P   L  +       +LE LP+ VK+++W   P   R  +  ++  Y+ H+  ++     V  L ++S+             +SP  RR+++P LA LV  +    +  L  V    I+   V+ G                 L +     +  +A+V+   A  + R   L + L   +  VK G V+   L ++ + LR M
Sbjct:   10 ETTSARTYMIGSAGGAQLQDILRTAAQPEEAIISFQKEHGLK--EDTSASLQLLDLLGCRRSETHKQLLESLVQTLLTRIQNKHTSEAQLAKLLEATFPYLEYKELRCVPIAIMAAQTTTPPLYLHEMCDPDHRHILEHLPIHVKRRLWSIAPHELRLEMDRVVGLYLDHKRQLLHETPCVYDLHTMSAA-----------SLSPEDRRKQDPVLATLVNMIGDSTELYLQCVD---ILRSIVASGSLPGHGSGLDSPKEYVYLASFLGTLRSDMANVQRDHATPLVRTDPLHKFLWFIDHAVKTGHVDQTQLTEILLVLRKM 316          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|298711717|emb|CBJ32764.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.0485 bits (227), Expect = 4.183e-15
Identity = 134/538 (24.91%), Postives = 218/538 (40.52%), Query Frame = 0
Query:  388 YLTVPELRTVPERIITKLRRIPSRILDRLAA----RPGLLEEL--PMRVKQQVWEAHPALFRRGLGAILEEYVRHRAS--VMMPAYDVVALLSLSSTPSPSAAGAPGKEVSPSKRRQENPCLAHLVACVNTEDDSKLDQVASHFIIDEYVSKGDPTLCTLFADFQVQLAHVRSGRAA--VISRLTHLARALEEWVKAGRVEAKALAQVQVHLRAMLSSSGTGAGRGVTPMSLSSKKEKKRKEADITSSGLTLKLPRAALSTPVAEKSWAKIPTLEQALEEGMGYLLKLDAPTRWFAKPVLELWPQIQEAYLAVVPHPMDLESMRKRVKASVGGVGEKERGGTAGYSTFAAFDSDAERVFDNCMAFNPPGSAFHSGAERMKKAWGKFKVKFEKTDVKRAMDRKKGAVGAGGLGDGSGLVT----KATTSTFVGAGDEAEL----------LSAAGRGTDKARDPTVPEALPGRPRVEAPTWGHALMLLADPCVLQVLGKTLKQELDEVFRSQG-LPKDHPRVPSLLQLLYLGLDARRQL 900
            + T  +L++VP +II+ L  +P R+LD++      +P   EEL  P+ +K   WE    LF R +    ++Y+    S  +++ +  +    SL +       G P +  + ++     P L   +           D +A  F  +  +S+      TL  D  V       G  A   + RL  LA  L+  V+        +  VQ   R       TG G G     +  ++E K++EA     G T                      +++ L+     + K+D   +WF  PV E    I E Y  V+  PMDL ++ K++K           GG  GY +F  FD D + ++ NC  +N  G+ ++  A R ++ W K   K E  D++    R  G  G G     +        K+ + +   + D+A            L+   + T   RD        GR RV     G A +LLA+P   +++ +   + + EV   +G LP+DHP    L+QLL LG  AR  L
Sbjct:    7 FATHADLKSVPLKIISSLSAVPERVLDKMNELQKLQPEQFEELGLPLAIKHLAWEKDSVLFVRIVSPHADKYLASEFSPKMVLSSQQLRFYRSLDTIKRRKLMG-PERINALAEYTGGRPILIGFLC----------DYIAERFSQENSLSEAG-LWATLLTDVLVTAREHAYGSIADQSVDRLCALASRLDLAVREDVFNDGTVRDVQRLFRL-----ATGIGEGQHEPGMVERREAKQEEAK-QKDGST---------------------KIQKTLKTAWSLVSKMD-KNKWFKDPVTE---AIAEGYHKVIKTPMDLGTILKKIK-----------GG--GYPSFGDFDRDLKLMWQNCRTYNGEGTQYNKEALRQEEEWSKISAKIE-NDLRHQETRPGGGGGGGAAPTATTPTNSNKRKSGSGSGGSSQDDARGSGGGGGGGAALAPMAQATQLERDGI------GR-RV-----GLASVLLAEPFAAKLMYRHASERIPEVCCERGILPRDHPVYAPLVQLLDLGESARHML 475          
BLAST of EWM29855.1 vs. NCBI_GenBank
Match: gi|929748695|ref|XP_014149331.1| (hypothetical protein SARC_12045 [Sphaeroforma arctica JP610] >gi|906940411|gb|KNC75429.1| hypothetical protein SARC_12045 [Sphaeroforma arctica JP610])

HSP 1 Score: 90.8929 bits (224), Expect = 6.987e-15
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 0
Query:  302 AAGRMLIKRGLRAGDPRAFIQRFQEENGLRGIPEARPALQLLDVLGVSRLQVYRHLLADLRARLVDRLDR--CQDQAQLERLLAHSFGYLTVPELRTVPERIITKLRRIPSRILDRLAARPGLLEELPMRVKQQVWEAH------PALFRRGLGAILEEYV 454
            +A    I+  L AGDP  FI +FQ ++GL+    +  AL  LDV GV R  +++  L  +R +L +R+ +    D   L  LL  SF Y T PEL+ +P  I+ +L  IP  IL  ++    + E  PM VK++VW  H       A FR+ + A +  ++
Sbjct:  345 SACTNYIEHNLAAGDPIDFIGQFQADSGLKIDHRSLAALPFLDVFGVPRSSLHKSFLESMREKLSERIKKLASSDIDTLNTLLEKSFIYFTHPELQDIPINIMKRLPVIPESILHHISISDEIYEACPMDVKRKVW-LHANNAEGQARFRKIVYATITNFM 504          
The following BLAST results are available for this feature:
BLAST of EWM29855.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112436|gb|EWM29855.1|0.000e+0100.00negative elongation factor b-like protein [Nannoch... [more]
gi|330791263|ref|XP_003283713.1|3.306e-2125.32hypothetical protein DICPUDRAFT_52489 [Dictyosteli... [more]
gi|551660643|ref|XP_005833089.1|5.318e-1936.08hypothetical protein GUITHDRAFT_163104 [Guillardia... [more]
gi|857978908|emb|CEO95146.1|9.777e-1836.42hypothetical protein PBRA_003912 [Plasmodiophora b... [more]
gi|1176084267|ref|XP_020612353.1|1.521e-1633.33negative elongation factor B-like [Orbicella faveo... [more]
gi|1005432664|ref|XP_015753896.1|2.778e-1628.64PREDICTED: negative elongation factor B-like [Acro... [more]
gi|66809827|ref|XP_638637.1|3.511e-1625.51hypothetical protein DDB_G0284195 [Dictyostelium d... [more]
gi|1173932760|gb|OQR84672.1|1.570e-1526.93hypothetical protein ACHHYP_13074 [Achlya hypogyna... [more]
gi|298711717|emb|CBJ32764.1|4.183e-1524.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|929748695|ref|XP_014149331.1|6.987e-1534.16hypothetical protein SARC_12045 [Sphaeroforma arct... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna815rna815Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications