EWM22540.1, cds8132 (CDS) Nannochloropsis gaditana

Overview
NameEWM22540.1
Unique Namecds8132
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:712832..713020 +
Alignment locationKK037247.1:713247..713894 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22540.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100859g2.2973.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:712832..713020 +
KK037247.1supercontigKK037247.1:713247..713894 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR004854UFD1
Homology
BLAST of EWM22540.1 vs. NCBI_GenBank
Match: gi|585103071|gb|EWM22540.1| (hypothetical protein Naga_100859g2 [Nannochloropsis gaditana])

HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
Query:    1 MDRVISEMRIVALCLEEGVGRQAALASSPGPLSLGEAQSRWCGLSSIIYRLTVSLFGPLVVLLVLDVQPSEAACIIETDCNVDFEAPVGYVEPGREGGREGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAKRQSSFLGSGQRLDGKTPAGGKGASKEGDSLGTSGTSSLSCSQGDGARGADTDQPPQILGRTISGRAPSTLGRGLSSTSHPLGGESVGSSLSDSITSPGSVSTSASSATAAGAHKKPALTKYSSKKGFQSFVGEGNKLS 278
            MDRVISEMRIVALCLEEGVGRQAALASSPGPLSLGEAQSRWCGLSSIIYRLTVSLFGPLVVLLVLDVQPSEAACIIETDCNVDFEAPVGYVEPGREGGREGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAKRQSSFLGSGQRLDGKTPAGGKGASKEGDSLGTSGTSSLSCSQGDGARGADTDQPPQILGRTISGRAPSTLGRGLSSTSHPLGGESVGSSLSDSITSPGSVSTSASSATAAGAHKKPALTKYSSKKGFQSFVGEGNKLS
Sbjct:    1 MDRVISEMRIVALCLEEGVGRQAALASSPGPLSLGEAQSRWCGLSSIIYRLTVSLFGPLVVLLVLDVQPSEAACIIETDCNVDFEAPVGYVEPGREGGREGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAKRQSSFLGSGQRLDGKTPAGGKGASKEGDSLGTSGTSSLSCSQGDGARGADTDQPPQILGRTISGRAPSTLGRGLSSTSHPLGGESVGSSLSDSITSPGSVSTSASSATAAGAHKKPALTKYSSKKGFQSFVGEGNKLS 278          
BLAST of EWM22540.1 vs. NCBI_GenBank
Match: gi|553190968|ref|XP_005855303.1| (thermostable carboxypeptidase, partial [Nannochloropsis gaditana CCMP526] >gi|422293759|gb|EKU21059.1| thermostable carboxypeptidase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 387.111 bits (993), Expect = 8.017e-130
Identity = 202/208 (97.12%), Postives = 204/208 (98.08%), Query Frame = 0
Query:   58 PLVVLL---VLDVQPSEAACIIETDCNVDFEAPVGYVEPGREGGREGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAKRQSSFLGSGQRLDGKTPAGGKGASKEGDSLGTSGTSSLSCSQGDGARGADTDQPPQILGRTISGRAPSTLGRGLSSTSHPLGGESVGSSLSDSITSPGSVSTSASSATAAGAHKKPALTKYS 262
            PL++ L   VLDVQPSEAACIIETDCNVDFEAPVGYVEPGREGGREGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAKRQSSFLGSGQRLDGKTPAGGKGASKEGDSLGTSGTSSLSCSQGDGARGADTDQPPQILGRTISGRAPSTLGRGLSSTSHPLGGESVGSSLSDSITSPGSVSTSASSATAAGAHKKPALTKYS
Sbjct:   22 PLLLPLLPQVLDVQPSEAACIIETDCNVDFEAPVGYVEPGREGGREGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAKRQSSFLGSGQRLDGKTPAGGKGASKEGDSLGTSGTSSLSCSQGDGARGADTDQPPQILGRTISGRAPSTLGRGLSSTSHPLGGESVGSSLSDSITSPGSVSTSASSATAAGAHKKPALTKYS 229          
BLAST of EWM22540.1 vs. NCBI_GenBank
Match: gi|365760640|gb|EHN02346.1| (Ufd1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7])

HSP 1 Score: 63.5438 bits (153), Expect = 6.400e-8
Identity = 40/119 (33.61%), Postives = 60/119 (50.42%), Query Frame = 0
Query:   51 LTVSLFGPLVVLLVLDVQPS---EAACIIETDCNVDFEAPVGYVEPGREGGREGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAK-RQSSFLGSGQRLDGKTPAGGKGASK 165
            + +S  G    + +L+V+P    ++ C+IETD   DF APVGYVEP  +  +     G   +++ G V+    L      T  + A  A + K +QS FLG GQ + GK P  G  A +
Sbjct:  160 IEISYNGKTFKIKILEVKPESSLKSICVIETDLVTDFAAPVGYVEPDYKALKAQQDKGKKGTSSRGQVLDPSVLGQGSMSTRINYAGVANSIKNKQSKFLGEGQNISGKAPKKGPEAKQ 278          
BLAST of EWM22540.1 vs. NCBI_GenBank
Match: gi|401625649|gb|EJS43647.1| (ufd1p [Saccharomyces arboricola H-6])

HSP 1 Score: 62.003 bits (149), Expect = 1.899e-7
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 0
Query:   51 LTVSLFGPLVVLLVLDVQP---SEAACIIETDCNVDFEAPVGYVEPGREGG-----REGGKAGGGASATNGGVITARPLSAKGGYTADHEAAAAAAAKRQSSFLGSGQRLDGKTP 157
            + +S  G    + +L+V+P   S++ C+IETD   DF APVGYVEP  +       +E   A G     +  V+    +S +  YT      A +   +QS+F+G GQ + GK P
Sbjct:  160 IEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAAPVGYVEPDYKAAKAQQDKEKKGASGKGQVLDPSVLEQGSMSTRIDYT----GTANSIKSKQSNFIGEGQNISGKAP 270          
BLAST of EWM22540.1 vs. NCBI_GenBank
Match: gi|1210522506|dbj|GAX18519.1| (ubiquitin fusion degradation protein 1 [Fistulifera solaris])

HSP 1 Score: 60.8474 bits (146), Expect = 4.953e-7
Identity = 41/124 (33.06%), Postives = 54/124 (43.55%), Query Frame = 0
Query:   62 LLVLDVQPSEAACIIETDCNVDFEAPVGYVEPGREGGREGG--------------KAGGGASATNGGVI---------TARPLSAKGGYTADHEAAAAAAAKRQSSFLGS----GQRLDGKTPA 158
            L +  VQP++AACIIETDC VDF+AP+GYVEP R                     +   G    NG ++         T  PL+ + G T   + AA         +        +RLDGK PA
Sbjct:  162 LALQQVQPADAACIIETDCQVDFDAPIGYVEPERTEASNYKSVNNNNNNNVEAPEEKATGIRIVNGQIVRPESNNPKATEIPLAERLGATGVQKNAAIPEEAPSVDYWALQSEGARRLDGKAPA 285          
The following BLAST results are available for this feature:
BLAST of EWM22540.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585103071|gb|EWM22540.1|0.000e+0100.00hypothetical protein Naga_100859g2 [Nannochloropsi... [more]
gi|553190968|ref|XP_005855303.1|8.017e-13097.12thermostable carboxypeptidase, partial [Nannochlor... [more]
gi|365760640|gb|EHN02346.1|6.400e-833.61Ufd1p [Saccharomyces cerevisiae x Saccharomyces ku... [more]
gi|401625649|gb|EJS43647.1|1.899e-733.04ufd1p [Saccharomyces arboricola H-6][more]
gi|1210522506|dbj|GAX18519.1|4.953e-733.06ubiquitin fusion degradation protein 1 [Fistulifer... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8156rna8156Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications