EWM22582.1, cds8093 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|585103143|gb|EWM22582.1| (Ion transport 2 [Nannochloropsis gaditana]) HSP 1 Score: 827.395 bits (2136), Expect = 0.000e+0 Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query: 1 MESDPQTTLLDPLSTYEPKGIHNGGGLQTAPSTFPQHPRSFPPTHRETVVRKQQRRRRGRPCEDAAHPAWAWHEDEGFDYCEAGGAEEGEGTGENSYWGHAEEVDEEANRRGRVAGLLGGVKPWTASLYHGPGLFCLWRRRRGRWEGKPGALGVEEEEAKGAEVEEGKMNEAEEAGREDGQPQEGPRWAWPGMRGGGEKRVRFSRTSASSLPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMFFKALDFHNALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTWG 408
MESDPQTTLLDPLSTYEPKGIHNGGGLQTAPSTFPQHPRSFPPTHRETVVRKQQRRRRGRPCEDAAHPAWAWHEDEGFDYCEAGGAEEGEGTGENSYWGHAEEVDEEANRRGRVAGLLGGVKPWTASLYHGPGLFCLWRRRRGRWEGKPGALGVEEEEAKGAEVEEGKMNEAEEAGREDGQPQEGPRWAWPGMRGGGEKRVRFSRTSASSLPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMFFKALDFHNALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTWG
Sbjct: 1 MESDPQTTLLDPLSTYEPKGIHNGGGLQTAPSTFPQHPRSFPPTHRETVVRKQQRRRRGRPCEDAAHPAWAWHEDEGFDYCEAGGAEEGEGTGENSYWGHAEEVDEEANRRGRVAGLLGGVKPWTASLYHGPGLFCLWRRRRGRWEGKPGALGVEEEEAKGAEVEEGKMNEAEEAGREDGQPQEGPRWAWPGMRGGGEKRVRFSRTSASSLPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMFFKALDFHNALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTWG 408
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|1091518270|ref|XP_018721420.1| (PREDICTED: two-pore potassium channel 5 isoform X2 [Eucalyptus grandis]) HSP 1 Score: 75.8702 bits (185), Expect = 2.204e-11 Identity = 69/236 (29.24%), Postives = 100/236 (42.37%), Query Frame = 0
Query: 203 FSRTSASSLPERPSASSLPERPSAASW----QALQRMSTVSVDFLKKQDRRP--------------------VQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTW 407
F + A LPER + RP A S + LQR T + RP V+ A F VY+L G+ + F F ++ H +AL+ I ++ +GYG +P TP +A VF+ VG GF+G L+ V + LD QE++ AR G EGGG G + E+ R R +V + ++L I G +VL +EG W
Sbjct: 80 FLDSPAGPLPERTAEDHDLSRPFARSHDGTRRGLQRCRTAPAMSVVSDLTRPGGPATPRDPNPRPGSASGSVVRQALFFLCVYLLLGVGIYAFNRDRFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPGTKAFACVFVLVGFGFIGILLSGVVNFVLDLQENMILTT-ARLSG-EGGGSGAVNYFVDVEK---------GRMRIRLKVGLALGVVVLCIGMGALVLCFVEGLDW 304
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|702489425|ref|XP_010035401.1| (PREDICTED: two-pore potassium channel 5 isoform X1 [Eucalyptus grandis]) HSP 1 Score: 74.7146 bits (182), Expect = 6.047e-11 Identity = 69/236 (29.24%), Postives = 100/236 (42.37%), Query Frame = 0
Query: 203 FSRTSASSLPERPSASSLPERPSAASW----QALQRMSTVSVDFLKKQDRRP--------------------VQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTW 407
F + A LPER + RP A S + LQR T + RP V+ A F VY+L G+ + F F ++ H +AL+ I ++ +GYG +P TP +A VF+ VG GF+G L+ V + LD QE++ AR G EGGG G + E+ R R +V + ++L I G +VL +EG W
Sbjct: 80 FLDSPAGPLPERTAEDHDLSRPFARSHDGTRRGLQRCRTAPAMSVVSDLTRPGGPATPRDPNPRPGSASGSVVRQALFFLCVYLLLGVGIYAFNRDRFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPGTKAFACVFVLVGFGFIGILLSGVVNFVLDLQENMILTT-ARLSG-EGGGSGAVNYFVDVEK---------GRMRIRLKVGLALGVVVLCIGMGALVLCFVEGLDW 304
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|629080322|gb|KCW46767.1| (hypothetical protein EUGRSUZ_K00574 [Eucalyptus grandis]) HSP 1 Score: 70.8626 bits (172), Expect = 4.909e-10 Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = 0
Query: 251 VQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTW 407
V+ A F VY+L G+ + F F ++ H +AL+ I ++ +GYG +P TP +A VF+ VG GF+G L+ V + LD QE++ AR G EGGG G + E+ R R +V + ++L I G +VL +EG W
Sbjct: 31 VRQALFFLCVYLLLGVGIYAFNRDRFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPGTKAFACVFVLVGFGFIGILLSGVVNFVLDLQENMILTT-ARLSG-EGGGSGAVNYFVDVEKGR---------MRIRLKVGLALGVVVLCIGMGALVLCFVEGLDW 183
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|1012183459|ref|XP_015968821.1| (two-pore potassium channel 5 [Arachis duranensis]) HSP 1 Score: 62.003 bits (149), Expect = 5.996e-7 Identity = 52/210 (24.76%), Postives = 92/210 (43.81%), Query Frame = 0
Query: 211 LPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMS----LMRIQMQRARQRVVWNIAR--IMLAILAGTVVLVPLEGWTW 407
LP L +A + ++ + + K Q ++ V+Y+ G+ + F F ++ H +AL+ I ++ +GYG +P TP+ + VF+ VG GF+ L+ + + LD QE+ LA G G +E+++E G S ++ + R R R+ +A ++L I G VL +EG W
Sbjct: 52 LPASSKKKKLSRCKTAPAMITMKEVKKKEAEVPKPQSSSVIRQGLILLVIYLSIGVAIYSFNRERFSGIETHPVIDALYFCIVTMCTIGYGDIAPLTPVTKVFACVFVLVGFGFIDILLSGLVNYVLDLQEN---TILA-------GLQMGSPIHQEQQQEAGFSARNYIIDVAKGRMRIRLKVGLALGVVVLCIGIGGFVLYSVEGLDW 251 The following BLAST results are available for this feature:
BLAST of EWM22582.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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