EWM22582.1, cds8093 (CDS) Nannochloropsis gaditana

Overview
NameEWM22582.1
Unique Namecds8093
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:609729..610474 +
Alignment locationKK037247.1:610741..610870 +
Alignment locationKK037247.1:611021..611371 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22582.1
ProductIon transport 2
Orig transcript idgnl|cribi|Naga_100155g1.10223.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:609729..610474 +
KK037247.1supercontigKK037247.1:610741..610870 +
KK037247.1supercontigKK037247.1:611021..611371 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR0130992pore_dom_K_chnl_dom
Homology
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|585103143|gb|EWM22582.1| (Ion transport 2 [Nannochloropsis gaditana])

HSP 1 Score: 827.395 bits (2136), Expect = 0.000e+0
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0
Query:    1 MESDPQTTLLDPLSTYEPKGIHNGGGLQTAPSTFPQHPRSFPPTHRETVVRKQQRRRRGRPCEDAAHPAWAWHEDEGFDYCEAGGAEEGEGTGENSYWGHAEEVDEEANRRGRVAGLLGGVKPWTASLYHGPGLFCLWRRRRGRWEGKPGALGVEEEEAKGAEVEEGKMNEAEEAGREDGQPQEGPRWAWPGMRGGGEKRVRFSRTSASSLPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMFFKALDFHNALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTWG 408
            MESDPQTTLLDPLSTYEPKGIHNGGGLQTAPSTFPQHPRSFPPTHRETVVRKQQRRRRGRPCEDAAHPAWAWHEDEGFDYCEAGGAEEGEGTGENSYWGHAEEVDEEANRRGRVAGLLGGVKPWTASLYHGPGLFCLWRRRRGRWEGKPGALGVEEEEAKGAEVEEGKMNEAEEAGREDGQPQEGPRWAWPGMRGGGEKRVRFSRTSASSLPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMFFKALDFHNALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTWG
Sbjct:    1 MESDPQTTLLDPLSTYEPKGIHNGGGLQTAPSTFPQHPRSFPPTHRETVVRKQQRRRRGRPCEDAAHPAWAWHEDEGFDYCEAGGAEEGEGTGENSYWGHAEEVDEEANRRGRVAGLLGGVKPWTASLYHGPGLFCLWRRRRGRWEGKPGALGVEEEEAKGAEVEEGKMNEAEEAGREDGQPQEGPRWAWPGMRGGGEKRVRFSRTSASSLPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMFFKALDFHNALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTWG 408          
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|1091518270|ref|XP_018721420.1| (PREDICTED: two-pore potassium channel 5 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 75.8702 bits (185), Expect = 2.204e-11
Identity = 69/236 (29.24%), Postives = 100/236 (42.37%), Query Frame = 0
Query:  203 FSRTSASSLPERPSASSLPERPSAASW----QALQRMSTVSVDFLKKQDRRP--------------------VQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTW 407
            F  + A  LPER +      RP A S     + LQR  T     +     RP                    V+ A  F  VY+L G+  + F    F  ++ H   +AL+  I ++  +GYG  +P TP  +A   VF+ VG GF+G L+  V +  LD QE++     AR  G EGGG G      + E+            R R +V   +  ++L I  G +VL  +EG  W
Sbjct:   80 FLDSPAGPLPERTAEDHDLSRPFARSHDGTRRGLQRCRTAPAMSVVSDLTRPGGPATPRDPNPRPGSASGSVVRQALFFLCVYLLLGVGIYAFNRDRFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPGTKAFACVFVLVGFGFIGILLSGVVNFVLDLQENMILTT-ARLSG-EGGGSGAVNYFVDVEK---------GRMRIRLKVGLALGVVVLCIGMGALVLCFVEGLDW 304          
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|702489425|ref|XP_010035401.1| (PREDICTED: two-pore potassium channel 5 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 74.7146 bits (182), Expect = 6.047e-11
Identity = 69/236 (29.24%), Postives = 100/236 (42.37%), Query Frame = 0
Query:  203 FSRTSASSLPERPSASSLPERPSAASW----QALQRMSTVSVDFLKKQDRRP--------------------VQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTW 407
            F  + A  LPER +      RP A S     + LQR  T     +     RP                    V+ A  F  VY+L G+  + F    F  ++ H   +AL+  I ++  +GYG  +P TP  +A   VF+ VG GF+G L+  V +  LD QE++     AR  G EGGG G      + E+            R R +V   +  ++L I  G +VL  +EG  W
Sbjct:   80 FLDSPAGPLPERTAEDHDLSRPFARSHDGTRRGLQRCRTAPAMSVVSDLTRPGGPATPRDPNPRPGSASGSVVRQALFFLCVYLLLGVGIYAFNRDRFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPGTKAFACVFVLVGFGFIGILLSGVVNFVLDLQENMILTT-ARLSG-EGGGSGAVNYFVDVEK---------GRMRIRLKVGLALGVVVLCIGMGALVLCFVEGLDW 304          
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|629080322|gb|KCW46767.1| (hypothetical protein EUGRSUZ_K00574 [Eucalyptus grandis])

HSP 1 Score: 70.8626 bits (172), Expect = 4.909e-10
Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = 0
Query:  251 VQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMSLMRIQMQRARQRVVWNIARIMLAILAGTVVLVPLEGWTW 407
            V+ A  F  VY+L G+  + F    F  ++ H   +AL+  I ++  +GYG  +P TP  +A   VF+ VG GF+G L+  V +  LD QE++     AR  G EGGG G      + E+            R R +V   +  ++L I  G +VL  +EG  W
Sbjct:   31 VRQALFFLCVYLLLGVGIYAFNRDRFSGVETHPVVDALYFCIVTMCTIGYGDIAPLTPGTKAFACVFVLVGFGFIGILLSGVVNFVLDLQENMILTT-ARLSG-EGGGSGAVNYFVDVEKGR---------MRIRLKVGLALGVVVLCIGMGALVLCFVEGLDW 183          
BLAST of EWM22582.1 vs. NCBI_GenBank
Match: gi|1012183459|ref|XP_015968821.1| (two-pore potassium channel 5 [Arachis duranensis])

HSP 1 Score: 62.003 bits (149), Expect = 5.996e-7
Identity = 52/210 (24.76%), Postives = 92/210 (43.81%), Query Frame = 0
Query:  211 LPERPSASSLPERPSAASWQALQRMSTVSVDFLKKQDRRPVQMAWAFFVVYVLAGLWYFMF----FKALDFH---NALFQIINSLSAVGYGYFSPSTPIEQALTVVFLFVGVGFMGSLIGIVASSRLDFQEDVKKEWLARQEGKEGGGDGGGEALEEEEEEPGMS----LMRIQMQRARQRVVWNIAR--IMLAILAGTVVLVPLEGWTW 407
            LP       L    +A +   ++ +     +  K Q    ++      V+Y+  G+  + F    F  ++ H   +AL+  I ++  +GYG  +P TP+ +    VF+ VG GF+  L+  + +  LD QE+     LA       G   G    +E+++E G S    ++ +   R R R+   +A   ++L I  G  VL  +EG  W
Sbjct:   52 LPASSKKKKLSRCKTAPAMITMKEVKKKEAEVPKPQSSSVIRQGLILLVIYLSIGVAIYSFNRERFSGIETHPVIDALYFCIVTMCTIGYGDIAPLTPVTKVFACVFVLVGFGFIDILLSGLVNYVLDLQEN---TILA-------GLQMGSPIHQEQQQEAGFSARNYIIDVAKGRMRIRLKVGLALGVVVLCIGIGGFVLYSVEGLDW 251          
The following BLAST results are available for this feature:
BLAST of EWM22582.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585103143|gb|EWM22582.1|0.000e+0100.00Ion transport 2 [Nannochloropsis gaditana][more]
gi|1091518270|ref|XP_018721420.1|2.204e-1129.24PREDICTED: two-pore potassium channel 5 isoform X2... [more]
gi|702489425|ref|XP_010035401.1|6.047e-1129.24PREDICTED: two-pore potassium channel 5 isoform X1... [more]
gi|629080322|gb|KCW46767.1|4.909e-1032.32hypothetical protein EUGRSUZ_K00574 [Eucalyptus gr... [more]
gi|1012183459|ref|XP_015968821.1|5.996e-724.76two-pore potassium channel 5 [Arachis duranensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8117rna8117Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications