EWM22589.1, cds8090 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22589.1
Unique Name	cds8090
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037247.1:604136..604571 -
Alignment location	KK037247.1:603817..603986 -
Alignment location	KK037247.1:603252..603671 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22589.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100155g3.10230.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:604136..604571 -
KK037247.1	supercontig	KK037247.1:603817..603986 -
KK037247.1	supercontig	KK037247.1:603252..603671 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

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BLAST of EWM22589.1 vs. NCBI_GenBank
Match: gi|585103150|gb|EWM22589.1| (hypothetical protein Naga_100155g3 [Nannochloropsis gaditana])

HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0

Query:    1 MPTHLVSSFFRKTDGESMVADIPDCSTPVSSQSIVEAFDDKRCCPSSSCPAVSPGAIGGREESAIDIVDEGKGWSNDDKEGGKPPTAQSNGARPRKCVDSPQRVPAARGLKSRKVLRFVIYTGCLLTLFFLALLFAYLGMVATIPPPFITLQPSTLKHLAFDGPYMNAVVSLGAEIENKSNFQVTIQASTVLITYHQAALGMVQLPTMHLHPSRSFVHDTNATFYRVNTITGPTTPGKREREGEEGGEEGGSATTPLGKRLMDEVLGKQSSTLKLEGHVSVRAHVVKRQGFPAVPINLRLACVFENQWGGRENRGEGGREEERDKYGAGCETTLHPFWWIP 341
            MPTHLVSSFFRKTDGESMVADIPDCSTPVSSQSIVEAFDDKRCCPSSSCPAVSPGAIGGREESAIDIVDEGKGWSNDDKEGGKPPTAQSNGARPRKCVDSPQRVPAARGLKSRKVLRFVIYTGCLLTLFFLALLFAYLGMVATIPPPFITLQPSTLKHLAFDGPYMNAVVSLGAEIENKSNFQVTIQASTVLITYHQAALGMVQLPTMHLHPSRSFVHDTNATFYRVNTITGPTTPGKREREGEEGGEEGGSATTPLGKRLMDEVLGKQSSTLKLEGHVSVRAHVVKRQGFPAVPINLRLACVFENQWGGRENRGEGGREEERDKYGAGCETTLHPFWWIP
Sbjct:    1 MPTHLVSSFFRKTDGESMVADIPDCSTPVSSQSIVEAFDDKRCCPSSSCPAVSPGAIGGREESAIDIVDEGKGWSNDDKEGGKPPTAQSNGARPRKCVDSPQRVPAARGLKSRKVLRFVIYTGCLLTLFFLALLFAYLGMVATIPPPFITLQPSTLKHLAFDGPYMNAVVSLGAEIENKSNFQVTIQASTVLITYHQAALGMVQLPTMHLHPSRSFVHDTNATFYRVNTITGPTTPGKREREGEEGGEEGGSATTPLGKRLMDEVLGKQSSTLKLEGHVSVRAHVVKRQGFPAVPINLRLACVFENQWGGRENRGEGGREEERDKYGAGCETTLHPFWWIP 341

The following BLAST results are available for this feature:

BLAST of EWM22589.1 vs. NCBI_GenBank

BLAST of EWM22589.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103150\|gb\|EWM22589.1\|	0.000e+0	100.00	hypothetical protein Naga_100155g3 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8114	rna8114	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications