EWM22584.1, cds8085 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|585103145|gb|EWM22584.1| (transcription initiation factor tfiid subunit 13 [Nannochloropsis gaditana]) HSP 1 Score: 245.743 bits (626), Expect = 2.029e-82 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MAGRNAHSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDARDPKVKKMTET 120
MAGRNAHSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDARDPKVKKMTET
Sbjct: 1 MAGRNAHSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDARDPKVKKMTET 120
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|936703831|ref|XP_014229878.1| (PREDICTED: transcription initiation factor TFIID subunit 13 [Trichogramma pretiosum]) HSP 1 Score: 97.4413 bits (241), Expect = 1.001e-23 Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 0
Query: 10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
S IPP A+ ++++ + +L M+YG+GD++ P ESVDLL+DLV E++ EM +A E+ R GR VQ D +FL+RKD R++ R+KDLL +EEL+ AR
Sbjct: 18 SEIPPGALTSARK-RLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEFITEMTHRAMEIGRTGR--VQVEDIVFLVRKDARKHARVKDLLTMNEELKKAR 115
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|936606842|ref|XP_014217369.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X2 [Copidosoma floridanum]) HSP 1 Score: 97.0561 bits (240), Expect = 1.401e-23 Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0
Query: 10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
S +P A S + + +L M+YG+GD++ P ESVDLL+DLV EY+ EM +A E+ R GR VQ D +FL+RKD R+Y R+KDLL +EEL+ AR
Sbjct: 15 SEMPIGASLTSARKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|936606840|ref|XP_014217368.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X1 [Copidosoma floridanum]) HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-23 Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0
Query: 10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
S +P A S + + +L M+YG+GD++ P ESVDLL+DLV EY+ EM +A E+ R GR VQ D +FL+RKD R+Y R+KDLL +EEL+ AR
Sbjct: 15 SEMPIGASLTSARKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|291228986|ref|XP_002734457.1| (PREDICTED: transcription initiation factor TFIID subunit 13-like [Saccoglossus kowalevskii]) HSP 1 Score: 96.6709 bits (239), Expect = 1.813e-23 Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 0
Query: 7 HSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
H S+ P + K+ + +L M+YG+GD++ P E+VDLL+DLV E+L EM +A EV R+GR VQ D +FLIRKD R+Y R++DLL +EEL+ AR
Sbjct: 14 HHDSAETPGESSQGKRKRLFSKELRCMMYGFGDDQNPYTETVDLLEDLVSEFLTEMTHKAMEVGRVGR--VQVEDVVFLIRKDPRKYARVRDLLTMNEELKKAR 115
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|645016594|ref|XP_008211542.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X1 [Nasonia vitripennis]) HSP 1 Score: 96.6709 bits (239), Expect = 1.946e-23 Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query: 10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
S IP S + + +L M+YG+GD++ P ESVDLL+DLV EY+ EM +A E+ R GR VQ D +FL+RKD R+Y R+KDLL +EEL+ AR
Sbjct: 15 SEIPIGGSLTSGRKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDARKYARVKDLLTMNEELKKAR 113
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|345495731|ref|XP_001606443.2| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X2 [Nasonia vitripennis]) HSP 1 Score: 96.2857 bits (238), Expect = 2.238e-23 Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query: 10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
S IP S + + +L M+YG+GD++ P ESVDLL+DLV EY+ EM +A E+ R GR VQ D +FL+RKD R+Y R+KDLL +EEL+ AR
Sbjct: 15 SEIPIGGSLTSGRKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDARKYARVKDLLTMNEELKKAR 113
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|766922439|ref|XP_011505792.1| (PREDICTED: transcription initiation factor TFIID subunit 13 [Ceratosolen solmsi marchali]) HSP 1 Score: 96.2857 bits (238), Expect = 2.523e-23 Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query: 10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
S IP S + + +L M+YG+GD++ P ESVDLL+DLV EY+ EM +A E+ R GR VQ D +FL+RKD R+Y R+KDLL +EEL+ AR
Sbjct: 15 SEIPIGGTLTSGKKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDPRKYARVKDLLTMNEELKKAR 113
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|939649790|ref|XP_014274231.1| (PREDICTED: transcription initiation factor TFIID subunit 13 [Halyomorpha halys]) HSP 1 Score: 94.7449 bits (234), Expect = 7.820e-23 Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 0
Query: 14 PQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
P + S + + +L M+YG+GD++ P ESVDLL+DLV EY+ +M QA E+ R GR VQ D IFL+RKD R+Y R+KDLL +EEL+ AR
Sbjct: 14 PDGIPLSGKKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITDMTHQAMEIGRTGR--VQVEDIIFLVRKDQRKYARVKDLLTMNEELKKAR 108
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|755955689|ref|XP_011303184.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X2 [Fopius arisanus]) HSP 1 Score: 94.3597 bits (233), Expect = 1.505e-22 Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0
Query: 10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
+ +P S + + +L M+YG+GD++ P ESVDLL+DLV EY+ EM +A E+ R GR VQ D +FL+RKD R+Y R+KDLL +EEL+ AR
Sbjct: 15 TELPIGGTLPSGRKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113 The following BLAST results are available for this feature:
BLAST of EWM22584.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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