EWM22584.1, cds8085 (CDS) Nannochloropsis gaditana

Overview
NameEWM22584.1
Unique Namecds8085
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:588583..588777 +
Alignment locationKK037247.1:588975..589142 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22584.1
Producttranscription initiation factor tfiid subunit 13
Orig transcript idgnl|cribi|Naga_100155g10.10225.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:588583..588777 +
KK037247.1supercontigKK037247.1:588975..589142 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006366transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003195TFIID-18
Homology
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|585103145|gb|EWM22584.1| (transcription initiation factor tfiid subunit 13 [Nannochloropsis gaditana])

HSP 1 Score: 245.743 bits (626), Expect = 2.029e-82
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MAGRNAHSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDARDPKVKKMTET 120
            MAGRNAHSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDARDPKVKKMTET
Sbjct:    1 MAGRNAHSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDARDPKVKKMTET 120          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|936703831|ref|XP_014229878.1| (PREDICTED: transcription initiation factor TFIID subunit 13 [Trichogramma pretiosum])

HSP 1 Score: 97.4413 bits (241), Expect = 1.001e-23
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            S IPP A+ ++++ +    +L  M+YG+GD++ P  ESVDLL+DLV E++ EM  +A E+ R GR  VQ  D +FL+RKD R++ R+KDLL  +EEL+ AR
Sbjct:   18 SEIPPGALTSARK-RLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEFITEMTHRAMEIGRTGR--VQVEDIVFLVRKDARKHARVKDLLTMNEELKKAR 115          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|936606842|ref|XP_014217369.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X2 [Copidosoma floridanum])

HSP 1 Score: 97.0561 bits (240), Expect = 1.401e-23
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            S +P  A   S + +    +L  M+YG+GD++ P  ESVDLL+DLV EY+ EM  +A E+ R GR  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 SEMPIGASLTSARKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|936606840|ref|XP_014217368.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X1 [Copidosoma floridanum])

HSP 1 Score: 97.0561 bits (240), Expect = 1.582e-23
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            S +P  A   S + +    +L  M+YG+GD++ P  ESVDLL+DLV EY+ EM  +A E+ R GR  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 SEMPIGASLTSARKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|291228986|ref|XP_002734457.1| (PREDICTED: transcription initiation factor TFIID subunit 13-like [Saccoglossus kowalevskii])

HSP 1 Score: 96.6709 bits (239), Expect = 1.813e-23
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    7 HSSSSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            H  S+  P   +  K+ +    +L  M+YG+GD++ P  E+VDLL+DLV E+L EM  +A EV R+GR  VQ  D +FLIRKD R+Y R++DLL  +EEL+ AR
Sbjct:   14 HHDSAETPGESSQGKRKRLFSKELRCMMYGFGDDQNPYTETVDLLEDLVSEFLTEMTHKAMEVGRVGR--VQVEDVVFLIRKDPRKYARVRDLLTMNEELKKAR 115          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|645016594|ref|XP_008211542.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X1 [Nasonia vitripennis])

HSP 1 Score: 96.6709 bits (239), Expect = 1.946e-23
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            S IP      S + +    +L  M+YG+GD++ P  ESVDLL+DLV EY+ EM  +A E+ R GR  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 SEIPIGGSLTSGRKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDARKYARVKDLLTMNEELKKAR 113          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|345495731|ref|XP_001606443.2| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X2 [Nasonia vitripennis])

HSP 1 Score: 96.2857 bits (238), Expect = 2.238e-23
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            S IP      S + +    +L  M+YG+GD++ P  ESVDLL+DLV EY+ EM  +A E+ R GR  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 SEIPIGGSLTSGRKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDARKYARVKDLLTMNEELKKAR 113          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|766922439|ref|XP_011505792.1| (PREDICTED: transcription initiation factor TFIID subunit 13 [Ceratosolen solmsi marchali])

HSP 1 Score: 96.2857 bits (238), Expect = 2.523e-23
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            S IP      S + +    +L  M+YG+GD++ P  ESVDLL+DLV EY+ EM  +A E+ R GR  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 SEIPIGGTLTSGKKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDPRKYARVKDLLTMNEELKKAR 113          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|939649790|ref|XP_014274231.1| (PREDICTED: transcription initiation factor TFIID subunit 13 [Halyomorpha halys])

HSP 1 Score: 94.7449 bits (234), Expect = 7.820e-23
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   14 PQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            P  +  S + +    +L  M+YG+GD++ P  ESVDLL+DLV EY+ +M  QA E+ R GR  VQ  D IFL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   14 PDGIPLSGKKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITDMTHQAMEIGRTGR--VQVEDIIFLVRKDQRKYARVKDLLTMNEELKKAR 108          
BLAST of EWM22584.1 vs. NCBI_GenBank
Match: gi|755955689|ref|XP_011303184.1| (PREDICTED: transcription initiation factor TFIID subunit 13 isoform X2 [Fopius arisanus])

HSP 1 Score: 94.3597 bits (233), Expect = 1.505e-22
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   10 SSIPPQAVAASKQGKGLRNDLVKMVYGYGDEKQPMQESVDLLDDLVKEYLEEMCRQACEVARLGRRDVQTSDFIFLIRKDGRRYKRMKDLLEADEELRDAR 110
            + +P      S + +    +L  M+YG+GD++ P  ESVDLL+DLV EY+ EM  +A E+ R GR  VQ  D +FL+RKD R+Y R+KDLL  +EEL+ AR
Sbjct:   15 TELPIGGTLPSGRKRLFSKELRCMMYGFGDDQNPYTESVDLLEDLVIEYITEMTHRAMEIGRTGR--VQVEDIVFLVRKDSRKYARVKDLLTMNEELKKAR 113          
The following BLAST results are available for this feature:
BLAST of EWM22584.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103145|gb|EWM22584.1|2.029e-82100.00transcription initiation factor tfiid subunit 13 [... [more]
gi|936703831|ref|XP_014229878.1|1.001e-2347.52PREDICTED: transcription initiation factor TFIID s... [more]
gi|936606842|ref|XP_014217369.1|1.401e-2348.51PREDICTED: transcription initiation factor TFIID s... [more]
gi|936606840|ref|XP_014217368.1|1.582e-2348.51PREDICTED: transcription initiation factor TFIID s... [more]
gi|291228986|ref|XP_002734457.1|1.813e-2347.12PREDICTED: transcription initiation factor TFIID s... [more]
gi|645016594|ref|XP_008211542.1|1.946e-2348.51PREDICTED: transcription initiation factor TFIID s... [more]
gi|345495731|ref|XP_001606443.2|2.238e-2348.51PREDICTED: transcription initiation factor TFIID s... [more]
gi|766922439|ref|XP_011505792.1|2.523e-2348.51PREDICTED: transcription initiation factor TFIID s... [more]
gi|939649790|ref|XP_014274231.1|7.820e-2349.48PREDICTED: transcription initiation factor TFIID s... [more]
gi|755955689|ref|XP_011303184.1|1.505e-2246.53PREDICTED: transcription initiation factor TFIID s... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8107rna8107Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications