EWM22602.1, cds8063 (CDS) Nannochloropsis gaditana

Overview
NameEWM22602.1
Unique Namecds8063
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:529272..531062 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22602.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100126g22.3028.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:529272..531062 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22602.1 vs. NCBI_GenBank
Match: gi|585103165|gb|EWM22602.1| (hypothetical protein Naga_100126g22 [Nannochloropsis gaditana])

HSP 1 Score: 1186.02 bits (3067), Expect = 0.000e+0
Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 0 
Query:    1 MVRYLSGNGAVFHHAQLRRSVSASDSPSCTAADQKKETCPGGILPPPFPGRSATIASNTSTSSSPSIATTDTGLSHLNLSLLGGSVSSSHLVGGQASPYMRQARKDSLGSSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQAVYAHRPPPRQPLPGPQGSSEAPRARMDAARSVVRQSENKQNAAAHEDVNMGAGTGVCPSGVGGGGGRTQTEAVHGRARRPVRWPLRPKRRKHPPPLEPRAEGREGAHSAMTTAGLRRPHEGLPSEEEMATPALASDLKCSRGQGLTDPPAPAPMPPHPRPPLSPPSSPLFLHPVAVPRPRPAACATPLEMIMPCLSSFSTSGGEESAAAGDGQGQSSHPSYPQAFPRPLPPPTAAIRSRAPGSKSDEGSPLPFDTAHIASLERRRHAALHSHHPEHSGEERGRQGHGGRRKPGRIASTRPDEGSLKRETPRGSPSFTSSSASSSSSPSPSSSSSPQPRTRPVPLPRCTRLPSERELGEACRVQQWQQQQQQELDQRPTGLQGKQSLEASVKADSAFERSGTAIRTV 596
            MVRYLSGNGAVFHHAQLRRSVSASDSPSCTAADQKKETCPGGILPPPFPGRSATIASNTSTSSSPSIATTDTGLSHLNLSLLGGSVSSSHLVGGQASPYMRQARKDSLGSSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQAVYAHRPPPRQPLPGPQGSSEAPRARMDAARSVVRQSENKQNAAAHEDVNMGAGTGVCPSGVGGGGGRTQTEAVHGRARRPVRWPLRPKRRKHPPPLEPRAEGREGAHSAMTTAGLRRPHEGLPSEEEMATPALASDLKCSRGQGLTDPPAPAPMPPHPRPPLSPPSSPLFLHPVAVPRPRPAACATPLEMIMPCLSSFSTSGGEESAAAGDGQGQSSHPSYPQAFPRPLPPPTAAIRSRAPGSKSDEGSPLPFDTAHIASLERRRHAALHSHHPEHSGEERGRQGHGGRRKPGRIASTRPDEGSLKRETPRGSPSFTSSSASSSSSPSPSSSSSPQPRTRPVPLPRCTRLPSERELGEACRVQQWQQQQQQELDQRPTGLQGKQSLEASVKADSAFERSGTAIRTV
Sbjct:    1 MVRYLSGNGAVFHHAQLRRSVSASDSPSCTAADQKKETCPGGILPPPFPGRSATIASNTSTSSSPSIATTDTGLSHLNLSLLGGSVSSSHLVGGQASPYMRQARKDSLGSSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQAVYAHRPPPRQPLPGPQGSSEAPRARMDAARSVVRQSENKQNAAAHEDVNMGAGTGVCPSGVGGGGGRTQTEAVHGRARRPVRWPLRPKRRKHPPPLEPRAEGREGAHSAMTTAGLRRPHEGLPSEEEMATPALASDLKCSRGQGLTDPPAPAPMPPHPRPPLSPPSSPLFLHPVAVPRPRPAACATPLEMIMPCLSSFSTSGGEESAAAGDGQGQSSHPSYPQAFPRPLPPPTAAIRSRAPGSKSDEGSPLPFDTAHIASLERRRHAALHSHHPEHSGEERGRQGHGGRRKPGRIASTRPDEGSLKRETPRGSPSFTSSSASSSSSPSPSSSSSPQPRTRPVPLPRCTRLPSERELGEACRVQQWQQQQQQELDQRPTGLQGKQSLEASVKADSAFERSGTAIRTV 596
[Close]
BLAST of EWM22602.1 vs. NCBI_GenBank
Match: gi|553178963|ref|XP_005852628.1| (hypothetical protein NGA_0686700, partial [Nannochloropsis gaditana CCMP526] >gi|422295907|gb|EKU23206.1| hypothetical protein NGA_0686700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 452.981 bits (1164), Expect = 1.643e-153
Identity = 303/329 (92.10%), Postives = 307/329 (93.31%), Query Frame = 0 
Query:    1 MVRYLSGNGAVFHHAQLRRSVSASDSPSCTAADQKKETCPGGILPPPFPGRSATIASNTSTSSSPSIATTDTGLSHLNLSLLGGSVSSSHLVGGQASPYMRQARKDSLGSSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQAVYAHRPPPRQPLPGPQGSSEAPRARMDAARSVVRQSENKQNAAAHEDVNMGAGTGVCPSGVGGGGGRTQTEAVHGRARRPVRWPLRPKRRKHPPPLEPRAEGREGAHSAMTTAGLRRPHEGLPSEEEMATPALASDLKC 329
            MVRYLSGNGAVFHHAQLRRSVSASDSPSCTAADQKKETCPGGILPPPFPGRSATIASNTSTSSSPSIATTDTGLSHLNLSLLGGSVSSSHLVGGQASPYMRQARKDSLGSSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQAVYAHRPPPRQPLPGPQGSSEAPRARMDAARSVVRQSENKQNAAAHEDVNMGAGTGVCPSGVGGGGG     +     +   +     K  + PPPLEPRAEGREG HSAMTTAGLRRPHEGLPSEEEMATPALASDLKC
Sbjct:    1 MVRYLSGNGAVFHHAQLRRSVSASDSPSCTAADQKKETCPGGILPPPFPGRSATIASNTSTSSSPSIATTDTGLSHLNLSLLGGSVSSSHLVGGQASPYMRQARKDSLGSSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQAVYAHRPPPRQPLPGPQGSSEAPRARMDAARSVVRQSENKQNAAAHEDVNMGAGTGVCPSGVGGGGGPDADGSRARTGQATGQVAPASKEAEAPPPLEPRAEGREGVHSAMTTAGLRRPHEGLPSEEEMATPALASDLKC 329
The following BLAST results are available for this feature:
BLAST of EWM22602.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103165|gb|EWM22602.1|0.000e+0100.00hypothetical protein Naga_100126g22 [Nannochlorops... [more]
gi|553178963|ref|XP_005852628.1|1.643e-15392.10hypothetical protein NGA_0686700, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8085rna8085Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications