EWM22617.1, cds8055 (CDS) Nannochloropsis gaditana

Overview
NameEWM22617.1
Unique Namecds8055
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:515291..515504 -
Alignment locationKK037247.1:514288..514967 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22617.1
Productcox11 cytochrome c oxidase assembly protein
Orig transcript idgnl|cribi|Naga_100528g2.9503.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:515291..515504 -
KK037247.1supercontigKK037247.1:514288..514967 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005507copper ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007533Cyt_c_oxidase_assmbl_CtaG
IPR023471CtaG/Cox11_dom
Homology
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|585103181|gb|EWM22617.1| (cox11 cytochrome c oxidase assembly protein [Nannochloropsis gaditana])

HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query:    1 MIPHRLIVGSRTKYGLAGHFFNLRSRSWSAFSSSHISTCVRRRPLPSALPLSRLSVHFSRAWQPCRRSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQEILRRNPNFPGSGGAHAVVGGEGGRRELA 297
            MIPHRLIVGSRTKYGLAGHFFNLRSRSWSAFSSSHISTCVRRRPLPSALPLSRLSVHFSRAWQPCRRSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQEILRRNPNFPGSGGAHAVVGGEGGRRELA
Sbjct:    1 MIPHRLIVGSRTKYGLAGHFFNLRSRSWSAFSSSHISTCVRRRPLPSALPLSRLSVHFSRAWQPCRRSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQEILRRNPNFPGSGGAHAVVGGEGGRRELA 297          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|698784475|ref|XP_009825281.1| (hypothetical protein H257_03068 [Aphanomyces astaci] >gi|574119784|gb|ETV85263.1| hypothetical protein H257_03068 [Aphanomyces astaci])

HSP 1 Score: 268.855 bits (686), Expect = 3.268e-87
Identity = 123/196 (62.76%), Postives = 156/196 (79.59%), Query Frame = 0
Query:   73 SARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQ 268
            S++AA AR+L EKN+R+  Y   +VI   G +YA+VPLYKVFCQ TGFGGTT+R+D L +    +P E + PI+I F+  VS   PW F P Q D+++VPGETALAF+T  N TDKA+ GVATYNV+PPKAGLYFNKIQCFCF+EQRLK +EE+DMPVFFF+DP++++DPSM NV  ITLSYTFFKTD+ +EE+V+
Sbjct:   28 SSKAAYARQLKEKNRRILYYTSGVVILFFGGAYAAVPLYKVFCQMTGFGGTTQRSDIL-AADKLSPVEGAHPIRITFDGGVSGALPWTFKPVQRDLIIVPGETALAFYTAMNNTDKAITGVATYNVYPPKAGLYFNKIQCFCFEEQRLKAQEEIDMPVFFFIDPDIVDDPSMQNVSNITLSYTFFKTDDVDEEDVE 222          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|568007564|gb|ETL81801.1| (hypothetical protein L917_17935 [Phytophthora parasitica] >gi|570315631|gb|ETO63579.1| hypothetical protein F444_18733 [Phytophthora parasitica P1976] >gi|570969705|gb|ETP32824.1| hypothetical protein F442_18548 [Phytophthora parasitica P10297])

HSP 1 Score: 267.7 bits (683), Expect = 2.069e-86
Identity = 122/203 (60.10%), Postives = 156/203 (76.85%), Query Frame = 0
Query:   67 RSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQE 269
            R  S+++A  A+   + ++N+R  +Y     IA  G+SYA+VPLYK+FCQ TGFGGTT+R +   +   T P E ++PI+I F+  VS   PW F P Q D+L+VPGETALAF+T KNKTDKA+ GVATYNV+PP AG+YFNKIQCFCF+EQRLKP EE+DMPVFFF+DPE+ +DPSM+ VH ITLSYTFFKTD+ +EEEV +
Sbjct:   35 RCISKRAAEEARRESIKQRNRRAVMYLAGTAIAWVGISYAAVPLYKIFCQMTGFGGTTQRVEEFVADKLT-PREDAKPIRITFDGGVSANMPWVFRPQQRDLLLVPGETALAFYTAKNKTDKAITGVATYNVYPPSAGVYFNKIQCFCFEEQRLKPNEEIDMPVFFFIDPEICDDPSMNGVHNITLSYTFFKTDDVSEEEVDD 236          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|566011925|gb|ETI34836.1| (hypothetical protein F443_18735 [Phytophthora parasitica P1569])

HSP 1 Score: 266.929 bits (681), Expect = 3.569e-86
Identity = 121/203 (59.61%), Postives = 156/203 (76.85%), Query Frame = 0
Query:   67 RSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQE 269
            R  S+++A  A+   + ++N+R  +Y     IA  G+SYA+VPLYK+FCQ TGFGGTT+R +   +   T P E ++PI++ F+  VS   PW F P Q D+L+VPGETALAF+T KNKTDKA+ GVATYNV+PP AG+YFNKIQCFCF+EQRLKP EE+DMPVFFF+DPE+ +DPSM+ VH ITLSYTFFKTD+ +EEEV +
Sbjct:   35 RCISKRAAEEARRESIKQRNRRAVMYLAGTAIAWVGISYAAVPLYKIFCQMTGFGGTTQRVEEFVADKLT-PREDAKPIRVTFDGGVSANMPWVFRPQQRDLLLVPGETALAFYTAKNKTDKAITGVATYNVYPPSAGVYFNKIQCFCFEEQRLKPNEEIDMPVFFFIDPEICDDPSMNGVHNITLSYTFFKTDDVSEEEVDD 236          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|673027332|ref|XP_008867627.1| (hypothetical protein H310_04871 [Aphanomyces invadans] >gi|574476400|gb|ETW03398.1| hypothetical protein H310_04871 [Aphanomyces invadans])

HSP 1 Score: 264.233 bits (674), Expect = 2.768e-85
Identity = 121/196 (61.73%), Postives = 153/196 (78.06%), Query Frame = 0
Query:   73 SARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQ 268
            S++AA A++L EKN+R+  Y   +VI   G +YA+VPLYKVFCQ TGFGGTT+R+D L +    +P E + PI+I F+  V    PW F P Q D+++VPGETALAF+T  N +DKAV GVATYNV PPKAGLYFNKIQCFCF+EQRLK REE+DMPVFFF+DP++++DPSM NV  ITLSYTFFKTD+ +E +V+
Sbjct:   27 SSKAAYAKQLQEKNRRILYYTSGVVILFFGGAYAAVPLYKVFCQMTGFGGTTQRSDIL-AAEKLSPVEGAHPIRITFDGGVGGAMPWTFKPVQRDLIIVPGETALAFYTATNNSDKAVTGVATYNVHPPKAGLYFNKIQCFCFEEQRLKAREEIDMPVFFFIDPDIVDDPSMQNVSNITLSYTFFKTDDVDESDVE 221          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|1214703800|gb|OWZ15755.1| (Cytochrome c oxidase [Phytophthora megakarya])

HSP 1 Score: 264.618 bits (675), Expect = 3.117e-85
Identity = 121/203 (59.61%), Postives = 154/203 (75.86%), Query Frame = 0
Query:   67 RSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQE 269
            R  S+++A  A+   +  +N+R  +Y     IA  G+SYA+VPLYK+FCQ TGFGGTT+R +   +   T P E ++PI+I F+  VS   PW F P Q D+L+ PGETALAF+T KNKTDKA+ GVATYNV+PP AG+YFNKIQCFCF+EQRLKP EE+DMPVFFF+DPE+ +DPSM+ VH ITLSYTFFKTD+ +E+EV E
Sbjct:   31 RCISKRAAEEARRESIKMRNRRAVMYLAGTAIAWVGISYAAVPLYKIFCQMTGFGGTTQRVEEFVADKLT-PREDAKPIRITFDGGVSANMPWVFRPQQRDLLLAPGETALAFYTAKNKTDKAITGVATYNVYPPSAGVYFNKIQCFCFEEQRLKPNEEIDMPVFFFIDPEICDDPSMNGVHNITLSYTFFKTDDVSEDEVDE 232          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|1173952867|gb|OQS00446.1| (cytochrome c oxidase assembly protein COX11, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 261.536 bits (667), Expect = 5.560e-84
Identity = 124/222 (55.86%), Postives = 162/222 (72.97%), Query Frame = 0
Query:   52 SRLSVHFSRAWQPCRRSFSQK-----SARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQ 268
            S + + F R  +P  R   Q+     S R++  R L EKNKR+ LY  S  +   G +YA+VPLYK+FCQ TGFGGTT+R+D L +    +P E + PI++ F+  V+   PW F P Q D+++VPGETALAF+T KN TDKA+ GVATYNV PPKAGLYFNKIQCFCF+EQRLK  EE+DMPVFFF+DP++++DPSM NV  ITLSYTFFKT++ +E++V+
Sbjct:   20 SIMVLAFLRPLRPVLRPALQQARFMSSQRSSYQRTLDEKNKRIMLYTASTALLFFGAAYAAVPLYKIFCQMTGFGGTTQRSDIL-TAEKLSPVEGAHPIRVTFDGGVAGAMPWSFRPIQRDLVIVPGETALAFYTAKNPTDKAITGVATYNVHPPKAGLYFNKIQCFCFEEQRLKANEEIDMPVFFFIDPDIVDDPSMTNVSNITLSYTFFKTEDVDEDDVE 240          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|675209167|ref|XP_008913468.1| (hypothetical protein PPTG_17565 [Phytophthora parasitica INRA-310] >gi|567949389|gb|ETK75121.1| hypothetical protein L915_18217 [Phytophthora parasitica] >gi|567978053|gb|ETL28547.1| hypothetical protein L916_18121 [Phytophthora parasitica] >gi|568037424|gb|ETM35009.1| hypothetical protein L914_18021 [Phytophthora parasitica] >gi|568086249|gb|ETN01141.1| hypothetical protein PPTG_17565 [Phytophthora parasitica INRA-310] >gi|570939419|gb|ETP04676.1| hypothetical protein F441_18594 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 257.684 bits (657), Expect = 1.857e-82
Identity = 117/193 (60.62%), Postives = 148/193 (76.68%), Query Frame = 0
Query:   67 RSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKT 259
            R  S+++A  A+   + ++N+R  +Y     IA  G+SYA+VPLYK+FCQ TGFGGTT+R +   +   T P E ++PI+I F+  VS   PW F P Q D+L+VPGETALAF+T KNKTDKA+ GVATYNV+PP AG+YFNKIQCFCF+EQRLKP EE+DMPVFFF+DPE+ +DPSM+ VH ITLSYTFFKT
Sbjct:   35 RCISKRAAEEARRESIKQRNRRAVMYLAGTAIAWVGISYAAVPLYKIFCQMTGFGGTTQRVEEFVADKLT-PREDAKPIRITFDGGVSANMPWVFRPQQRDLLLVPGETALAFYTAKNKTDKAITGVATYNVYPPSAGVYFNKIQCFCFEEQRLKPNEEIDMPVFFFIDPEICDDPSMNGVHNITLSYTFFKT 226          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|301105186|ref|XP_002901677.1| (cytochrome c oxidase assembly protein COX11, mitochondrial precursor [Phytophthora infestans T30-4] >gi|262100681|gb|EEY58733.1| cytochrome c oxidase assembly protein COX11, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 256.914 bits (655), Expect = 3.388e-82
Identity = 116/193 (60.10%), Postives = 148/193 (76.68%), Query Frame = 0
Query:   67 RSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKT 259
            R  S+++A  A+   + ++N+R  +Y     IA  G+SYA+VPLYK+FCQ TGFGGTT+R +   +   T P E ++PI+I F+  VS   PW F P Q D+L+VPGETALAF+T +NKTDKA+ GVATYNV+PP AG+YFNKIQCFCF+EQRLKP EE+DMPVFFF+DPE+ +DPSM+ VH ITLSYTFFKT
Sbjct:   35 RCISKRAAEEARRESMKQRNRRAVMYLAGTAIAWVGISYAAVPLYKIFCQMTGFGGTTQRVEEFVADKLT-PREDAKPIRITFDGGVSANMPWVFRPQQRDLLLVPGETALAFYTARNKTDKAITGVATYNVYPPSAGVYFNKIQCFCFEEQRLKPNEEIDMPVFFFIDPEICDDPSMNGVHNITLSYTFFKT 226          
BLAST of EWM22617.1 vs. NCBI_GenBank
Match: gi|953497971|emb|CEG40731.1| (glycine cleavage system h protein [Plasmopara halstedii])

HSP 1 Score: 259.996 bits (663), Expect = 8.721e-82
Identity = 119/194 (61.34%), Postives = 151/194 (77.84%), Query Frame = 0
Query:   78 QAR--ELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQE 269
            QAR   + ++N+R  +Y     IA  G+SYA+VPLYK+FCQ TGFGGTT+RA+   +   T P E ++PI++ F+  VS   PW F P Q DIL+VPGETALAF+T KNK+DKA+ GVATYNV+PP +G+YFNKIQCFCF+EQRLKP EE+DMPVFFF+DPE+ +DP M+ VH ITLSYTFFKTD+ NEE+V +
Sbjct:  157 QARRDSIKKRNRRAVIYLAGTAIAWVGISYAAVPLYKIFCQMTGFGGTTQRAEDFTASKLT-PREDAKPIRVTFDGGVSANMPWVFRPQQRDILLVPGETALAFYTAKNKSDKAITGVATYNVYPPSSGVYFNKIQCFCFEEQRLKPNEEIDMPVFFFIDPEICDDPFMNGVHNITLSYTFFKTDDINEEDVDD 349          
The following BLAST results are available for this feature:
BLAST of EWM22617.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103181|gb|EWM22617.1|0.000e+0100.00cox11 cytochrome c oxidase assembly protein [Nanno... [more]
gi|698784475|ref|XP_009825281.1|3.268e-8762.76hypothetical protein H257_03068 [Aphanomyces astac... [more]
gi|568007564|gb|ETL81801.1|2.069e-8660.10hypothetical protein L917_17935 [Phytophthora para... [more]
gi|566011925|gb|ETI34836.1|3.569e-8659.61hypothetical protein F443_18735 [Phytophthora para... [more]
gi|673027332|ref|XP_008867627.1|2.768e-8561.73hypothetical protein H310_04871 [Aphanomyces invad... [more]
gi|1214703800|gb|OWZ15755.1|3.117e-8559.61Cytochrome c oxidase [Phytophthora megakarya][more]
gi|1173952867|gb|OQS00446.1|5.560e-8455.86cytochrome c oxidase assembly protein COX11, mitoc... [more]
gi|675209167|ref|XP_008913468.1|1.857e-8260.62hypothetical protein PPTG_17565 [Phytophthora para... [more]
gi|301105186|ref|XP_002901677.1|3.388e-8260.10cytochrome c oxidase assembly protein COX11, mitoc... [more]
gi|953497971|emb|CEG40731.1|8.721e-8261.34glycine cleavage system h protein [Plasmopara hals... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8077rna8077Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications