EWM22643.1, cds8052 (CDS) Nannochloropsis gaditana

Overview
NameEWM22643.1
Unique Namecds8052
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:510856..511905 -

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Properties
Property NameValue
Protein idEWM22643.1
ProductZinc finger, CW-type
Orig transcript idgnl|cribi|Naga_100023g65.3959.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:510856..511905 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011124Znf_CW
Homology
[Close]
BLAST of EWM22643.1 vs. NCBI_GenBank
Match: gi|585103208|gb|EWM22643.1| (Zinc finger, CW-type [Nannochloropsis gaditana])

HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0 
Query:    1 MPSTSSTSNLDDKQTDTPGPPRKKTTLHHALFIRGPSPPPPPQPSPAPTTLTSQTPSPSKNQSKHSTSNISAPNSFLHDRGAHPPRAVADAPLTVALPGGAEGFRAPLLSRNWIHKTGGKVKTEEGLFMAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEAYGRPPKKKAS 349
            MPSTSSTSNLDDKQTDTPGPPRKKTTLHHALFIRGPSPPPPPQPSPAPTTLTSQTPSPSKNQSKHSTSNISAPNSFLHDRGAHPPRAVADAPLTVALPGGAEGFRAPLLSRNWIHKTGGKVKTEEGLFMAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEAYGRPPKKKAS
Sbjct:    1 MPSTSSTSNLDDKQTDTPGPPRKKTTLHHALFIRGPSPPPPPQPSPAPTTLTSQTPSPSKNQSKHSTSNISAPNSFLHDRGAHPPRAVADAPLTVALPGGAEGFRAPLLSRNWIHKTGGKVKTEEGLFMAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEAYGRPPKKKAS 349
[Close]
BLAST of EWM22643.1 vs. NCBI_GenBank
Match: gi|553180252|ref|XP_005853372.1| (hypothetical protein NGA_0712700 [Nannochloropsis gaditana CCMP526] >gi|422295689|gb|EKU22988.1| hypothetical protein NGA_0712700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 458.759 bits (1179), Expect = 2.627e-161
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 
Query:  129 MAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEAYGRPPKKKAS 349
            MAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEAYGRPPKKKAS
Sbjct:    1 MAILVDHARIPLPTAESLRRSLGFDPLAHDSVIFFERKGRRLAGNFGAVVRESWSMWNKAAYECFAARDRGAAEAFQDFLEGEVFGWLECEACGRWRMYPREDVLLPREGSVFVCDLAYSWNPAIQGCQTEQEFSIDSVGTGSTNSSTAAPILPAERPAIPKQFEAQIDTAHAERLGGASSVTARRLLGNSKDEGKQWKERGKGSEGLGEAYGRPPKKKAS 221
The following BLAST results are available for this feature:
BLAST of EWM22643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103208|gb|EWM22643.1|0.000e+0100.00Zinc finger, CW-type [Nannochloropsis gaditana][more]
gi|553180252|ref|XP_005853372.1|2.627e-161100.00hypothetical protein NGA_0712700 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8074rna8074Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications