EWM22661.1, cds8045 (CDS) Nannochloropsis gaditana

Overview
NameEWM22661.1
Unique Namecds8045
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:492242..494053 -

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Properties
Property NameValue
Protein idEWM22661.1
Productc6 transcription factor
Orig transcript idgnl|cribi|Naga_100023g58.3977.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:492242..494053 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR002409Aflatoxin_BRP
Homology
[Close]
BLAST of EWM22661.1 vs. NCBI_GenBank
Match: gi|585103226|gb|EWM22661.1| (c6 transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 1221.84 bits (3160), Expect = 0.000e+0
Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 0 
Query:    1 MPASVAVGGDGHEPPGASDLRDSAAAGAGKDCTLESTVSHPSTSESSDAVLAEKQEGEERAILEETQKQSQHQPSLPKRVSDQPGTESSNSCEESTNSPDMDVQDRREDKGSIERSREETLSLKKMLDRAKGTIKQLNGMLATYEHENGRLQDYMEALGNKHASGSINHCSTARNLRPFAENRNPPFYPMPAESSKTFCLPGSNGVPGLMRGPIPSPLFPMYGPEAPRFPLMKGGSGVFGEGPRSPPEDNGSSFLWRTQRQSLPWQYQQPHQMLSQPQPPASSALSPSAALGLLQFSQPTSLDSQGSGLPGPGASGTGRKRERAESQTTSPEPPSSNPEPHPPQASSSSGEGAGEGSEKGGKAETPGPGAGSWGESQEAGTAVTLVSDGKTDEKRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNAFKRERGRVNTRWGVPLASQTEETHLQPPLLKEPRKGAQAAQPQDQHKQLPAYDQHQLPQPPCEQQQQQEQQPLHPLHFSMTAPLARAPPPQAGPLPPFATSAMFSHLTGSYPPPPPPFLPPQSHASLIQRRRTHVQHVLVVPATPLGLPAFRAAHAEQDAS 603
            MPASVAVGGDGHEPPGASDLRDSAAAGAGKDCTLESTVSHPSTSESSDAVLAEKQEGEERAILEETQKQSQHQPSLPKRVSDQPGTESSNSCEESTNSPDMDVQDRREDKGSIERSREETLSLKKMLDRAKGTIKQLNGMLATYEHENGRLQDYMEALGNKHASGSINHCSTARNLRPFAENRNPPFYPMPAESSKTFCLPGSNGVPGLMRGPIPSPLFPMYGPEAPRFPLMKGGSGVFGEGPRSPPEDNGSSFLWRTQRQSLPWQYQQPHQMLSQPQPPASSALSPSAALGLLQFSQPTSLDSQGSGLPGPGASGTGRKRERAESQTTSPEPPSSNPEPHPPQASSSSGEGAGEGSEKGGKAETPGPGAGSWGESQEAGTAVTLVSDGKTDEKRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNAFKRERGRVNTRWGVPLASQTEETHLQPPLLKEPRKGAQAAQPQDQHKQLPAYDQHQLPQPPCEQQQQQEQQPLHPLHFSMTAPLARAPPPQAGPLPPFATSAMFSHLTGSYPPPPPPFLPPQSHASLIQRRRTHVQHVLVVPATPLGLPAFRAAHAEQDAS
Sbjct:    1 MPASVAVGGDGHEPPGASDLRDSAAAGAGKDCTLESTVSHPSTSESSDAVLAEKQEGEERAILEETQKQSQHQPSLPKRVSDQPGTESSNSCEESTNSPDMDVQDRREDKGSIERSREETLSLKKMLDRAKGTIKQLNGMLATYEHENGRLQDYMEALGNKHASGSINHCSTARNLRPFAENRNPPFYPMPAESSKTFCLPGSNGVPGLMRGPIPSPLFPMYGPEAPRFPLMKGGSGVFGEGPRSPPEDNGSSFLWRTQRQSLPWQYQQPHQMLSQPQPPASSALSPSAALGLLQFSQPTSLDSQGSGLPGPGASGTGRKRERAESQTTSPEPPSSNPEPHPPQASSSSGEGAGEGSEKGGKAETPGPGAGSWGESQEAGTAVTLVSDGKTDEKRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNAFKRERGRVNTRWGVPLASQTEETHLQPPLLKEPRKGAQAAQPQDQHKQLPAYDQHQLPQPPCEQQQQQEQQPLHPLHFSMTAPLARAPPPQAGPLPPFATSAMFSHLTGSYPPPPPPFLPPQSHASLIQRRRTHVQHVLVVPATPLGLPAFRAAHAEQDAS 603
[Close]
BLAST of EWM22661.1 vs. NCBI_GenBank
Match: gi|553184606|ref|XP_005854119.1| (zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526] >gi|422294940|gb|EKU22240.1| zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.9366 bits (167), Expect = 1.582e-8
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0 
Query:  385 LVSDGKTDEKRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNA 442
            ++S      K+ R+SCD CT+ KIRCDG    C+NC +R  ACHYSE++R GPK+  A
Sbjct:    1 MISPTDRSRKKLRRSCDRCTSKKIRCDG-LAACQNCVRRGYACHYSERRRTGPKIRTA 57
[Close]
BLAST of EWM22661.1 vs. NCBI_GenBank
Match: gi|585111880|gb|EWM29352.1| (zn 2cys6 transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 68.5514 bits (166), Expect = 1.929e-8
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:  394 KRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNA 442
            K+ R+SCD CT+ KIRCDG    C+NC +R  ACHYSE++R GPK+  A
Sbjct:   10 KKLRRSCDRCTSKKIRCDG-LAACQNCVRRGYACHYSERRRTGPKIRTA 57
The following BLAST results are available for this feature:
BLAST of EWM22661.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585103226|gb|EWM22661.1|0.000e+0100.00c6 transcription factor [Nannochloropsis gaditana][more]
gi|553184606|ref|XP_005854119.1|1.582e-850.00zn 2cys6 transcription factor [Nannochloropsis gad... [more]
gi|585111880|gb|EWM29352.1|1.929e-857.14zn 2cys6 transcription factor [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8067rna8067Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications