EWM22629.1, cds8030 (CDS) Nannochloropsis gaditana

Overview
NameEWM22629.1
Unique Namecds8030
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:448260..449438 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22629.1
Productreticulon 4 interacting protein 1
Orig transcript idgnl|cribi|Naga_100023g40.3945.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:448260..449438 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR013149ADH_C
IPR011032GroES-like
Homology
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|585103194|gb|EWM22629.1| (reticulon 4 interacting protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 799.275 bits (2063), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MPFRVSIQVLCLCLVFTTRSTIPACAFQAASLWRTRHAPLCSVTLGPTGAGSQEQHDEGNGALVTVVVERVASHTVMPSALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGRSPEREPVLAFVGPDIAAGKPGSRIQVPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKAGAEEAIDCRTTSFSERVPEYAAVVDTVGTDTEGLAANLLRYKKAAYVSTMPSATRRMQAQGLLQAASTFASVFWGKPDLALTDAHWLPEKLGMDVISYVLRLAEAKHVVLPLAPPSLDDYMDGVVWAKDSETQARFGFPAPLPEEGLTEAFLSRFQKRMEGEKEQ 392
            MPFRVSIQVLCLCLVFTTRSTIPACAFQAASLWRTRHAPLCSVTLGPTGAGSQEQHDEGNGALVTVVVERVASHTVMPSALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGRSPEREPVLAFVGPDIAAGKPGSRIQVPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKAGAEEAIDCRTTSFSERVPEYAAVVDTVGTDTEGLAANLLRYKKAAYVSTMPSATRRMQAQGLLQAASTFASVFWGKPDLALTDAHWLPEKLGMDVISYVLRLAEAKHVVLPLAPPSLDDYMDGVVWAKDSETQARFGFPAPLPEEGLTEAFLSRFQKRMEGEKEQ
Sbjct:    1 MPFRVSIQVLCLCLVFTTRSTIPACAFQAASLWRTRHAPLCSVTLGPTGAGSQEQHDEGNGALVTVVVERVASHTVMPSALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGRSPEREPVLAFVGPDIAAGKPGSRIQVPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKAGAEEAIDCRTTSFSERVPEYAAVVDTVGTDTEGLAANLLRYKKAAYVSTMPSATRRMQAQGLLQAASTFASVFWGKPDLALTDAHWLPEKLGMDVISYVLRLAEAKHVVLPLAPPSLDDYMDGVVWAKDSETQARFGFPAPLPEEGLTEAFLSRFQKRMEGEKEQ 392          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|299117596|emb|CBN75438.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.605 bits (257), Expect = 1.757e-20
Identity = 79/268 (29.48%), Postives = 126/268 (47.01%), Query Frame = 0
Query:  105 VSFHVVVGRSPEREPVLAFVGPDIAAGKPGSRIQVPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKAGAEEAIDCRTTSFSERVPEYAAVVDTVGTDTEGLAANLLRYKKAAYVSTMPSATRRMQAQGLLQAASTFASVFWGKPDLALTDA--HWLPEKLGMDVISYVLRLAEAKHVVLPLAPPS---LDDYMDGVVWAKDSETQARFGFPA 367
            V    + G   +   V+  V P    G  G  + V    ++ +P+ L  ++  +LP+ A+S L PL  AG     G S  A     +  G G  A F + VL+AWG RV   + ++       GA+ A+D R  S+S+ V +++AVVDT+G + EG    L   + A YVS  PS  +     GLL  +     +   +  +A  D+  ++LP    + ++S V  L  A  V L         + +Y++ + W KD++T  RFGFP 
Sbjct:   95 VLMQTISGVLDDGREVIGVVKPGKYPG--GGSVLVEERHLVDKPQGLGWDKAAMLPFLAISCLWPLSEAGF----GDSMDAGQTFVVTGGHGSLAPFVVAVLKAWGGRVALATTKSEGGARALGADLAVDFRKESYSDVVQDFSAVVDTLGREKEGPQDMLKEARGAEYVSLQPSILKVAVEDGLLFGS---GKILQYQKTVAKDDSRTYFLPNPEAVGLVSQVSALVAAGKVRLGEVGTDYVGMQEYLEALAWPKDTDTGLRFGFPG 353          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|696991968|ref|XP_009563198.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Cuculus canorus])

HSP 1 Score: 75.485 bits (184), Expect = 1.788e-11
Identity = 73/260 (28.08%), Postives = 118/260 (45.38%), Query Frame = 0
Query:   67 VVERVASHTVMP---SALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGRSPEREPVLAFVGPDIAAGKPG---------------SRIQVPTGV-VLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKA-GAEEAIDCRTTSFSER---VPEYAAVVDTVGTDTEGLAANLL-RYKKAAYVSTMPSATRRMQ----AQGLLQAASTFAS 298
            VV +V + ++ P   S  + +G    N    P+K    SEE  F + +GR  +   V+   G  ++  KPG               S   V +G  V  +P+SLS  E   LPY  ++    + + G   G   +  +  +V I+   G    FA+Q+++AWG  V  V   +  AL+K  GA++ ID ++ +  E+   +P +  ++D VG  TE  A NLL ++  A YV+ +      M     A G+LQ   T  S
Sbjct:   34 VVIKVHAASLNPIDLSMRSGYGATALNMKRDPLKL--KSEETEFPLTLGR--DVSGVVMECGLSVSYFKPGDEVWAAIPPWKQGTLSEFVVASGNEVSFKPKSLSHTEAASLPYVGLTAWSAVHQVG---GLNQNNCSGKRVLILGASGGVGTFAVQLVKAWGAHVTAVCSHDASALMKKLGADDVIDYKSGNLEEQLKALPLFDFILDNVGGSTEKWALNLLKKWSGATYVTLVTPFLINMDKLGVADGMLQTGVTVGS 286          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|676592091|gb|KFO79118.1| (hypothetical protein N303_13521, partial [Cuculus canorus])

HSP 1 Score: 75.0998 bits (183), Expect = 2.332e-11
Identity = 73/261 (27.97%), Postives = 118/261 (45.21%), Query Frame = 0
Query:   67 VVERVASHTVMP---SALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGRSPEREPVLAFVGPDIAAGKPG----------------SRIQVPTGV-VLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKA-GAEEAIDCRTTSFSER---VPEYAAVVDTVGTDTEGLAANLL-RYKKAAYVSTMPSATRRMQ----AQGLLQAASTFAS 298
            VV +V + ++ P   S  + +G    N    P+K    SEE  F + +GR  +   V+   G  ++  KPG                S   V +G  V  +P+SLS  E   LPY  ++    + + G   G   +  +  +V I+   G    FA+Q+++AWG  V  V   +  AL+K  GA++ ID ++ +  E+   +P +  ++D VG  TE  A NLL ++  A YV+ +      M     A G+LQ   T  S
Sbjct:   26 VVIKVHAASLNPIDLSMRSGYGATALNMKRDPLKL--KSEETEFPLTLGR--DVSGVVMECGLSVSYFKPGDEVVWAAIPPWKQGTLSEFVVASGNEVSFKPKSLSHTEAASLPYVGLTAWSAVHQVG---GLNQNNCSGKRVLILGASGGVGTFAVQLVKAWGAHVTAVCSHDASALMKKLGADDVIDYKSGNLEEQLKALPLFDFILDNVGGSTEKWALNLLKKWSGATYVTLVTPFLINMDKLGVADGMLQTGVTVGS 279          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|1057243195|ref|WP_068613282.1| (hypothetical protein [Woeseia oceani] >gi|1041526289|gb|ANO50518.1| hypothetical protein BA177_04195 [Woeseia oceani])

HSP 1 Score: 73.1738 bits (178), Expect = 1.286e-10
Identity = 64/225 (28.44%), Postives = 101/225 (44.89%), Query Frame = 0
Query:  109 VVVGRSPEREPVLAFVGPDIAAGKPGSRIQ-------------VPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGV-SRRNLDALLKAGAEEAIDCRTTSFSERVPEYAAVVDTVGTDTEGLAANLLRYKKAAYVSTMPSATR-RMQAQGLLQAASTFASVFWGKPDLALTDAHWLPEKL 318
            +V+GR  +   V+  VG ++A  K G  +              V    +  +P +LS  E   LP+ A++    L+    + G  +   A  KV I    G    FA+Q+++AWG  VVG+ S RN D +   GA+E ID     FS ++  +    DTVG  ++  +A+L         +T P+      +   +L+  S  A V    P +ALTD H L E +
Sbjct:   66 LVLGR--DAAGVIVQVGKNVAGFKCGDEVYAAPHIGCHAEYVAVDASYIAKKPRNLSYLEAASLPFVALTAWTALVD---NAGFSAENAAGKKVVIPRAAGGVGSFAVQLMKAWGAYVVGLCSERNFDFVRALGADEVIDYTKADFSAQLTAFDCAFDTVGRSSDFESADLRG-------ATDPAGEHFDEKLMSMLKRDSGAAYVTVCSPKMALTDRHGLDEGI 278          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|1117363429|ref|XP_019375693.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Gavialis gangeticus])

HSP 1 Score: 73.1738 bits (178), Expect = 1.444e-10
Identity = 71/260 (27.31%), Postives = 118/260 (45.38%), Query Frame = 0
Query:   67 VVERVASHTVMP---SALAAHGKLLKNTNFQPVKFIPPSEEVSFHVVVGRSPEREPVLAFVGPDIAAGKPG---------------SRIQVPTGV-VLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALL-KAGAEEAIDCRTTSFSER---VPEYAAVVDTVGTDTEGLAANLL-RYKKAAYVSTMPSATRRMQ----AQGLLQAASTFAS 298
            VV RV + ++ P   +  + +G    N    P+K     +E  F +++GR  +   V+   G  ++  KPG               S   V +G  V  +P+SLS  E   LPY  ++    + + G   G   +  A  ++ I+   G    FAIQ+++AWG  V  V  R+  +L+ K GA++ ID ++    E+   +P +  ++D VG  TE  A N L R+  A YV+ +      M     A G+LQ   T ++
Sbjct:   67 VVIRVHAASLNPIDVNMRSGYGAAALNIRRDPLKIKTTGDE--FPLILGR--DVSGVVMECGLSVSYFKPGDEVWAAIPPWKQGTLSEFVVASGNEVSLKPKSLSHTEAAALPYVGLTAWSAMNQTG---GLNQNNCAGKRILILGASGGVGTFAIQLMKAWGAHVTAVCSRDAKSLVTKLGADDVIDYKSGDTEEQLKLLPLFDFILDNVGGSTEKWALNFLKRWSGATYVTLVTPFLLNMDRLGVADGMLQTGITMST 319          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|557269121|ref|XP_006019879.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Alligator sinensis] >gi|557269123|ref|XP_006019880.1| PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Alligator sinensis])

HSP 1 Score: 72.0182 bits (175), Expect = 3.221e-10
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 0
Query:  147 RPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALL-KAGAEEAIDCRTTSFSER---VPEYAAVVDTVGTDTEGLAANLL-RYKKAAYVSTMPSATRRMQ----AQGLLQAASTFAS 298
            +P+SLS  E   LPY  ++    + + G   G   +  A  ++ I+   G    FAIQ+++AWG  V  V  R+  +L+ K GA++ ID ++    E+   +P +  ++D VG  TE  A N L R+  A YV+ +      M     A G+LQ   T  +
Sbjct:  160 KPKSLSHTEAAALPYVGLTAWSAMNQIG---GLNQNNCAGKRILILGASGGVGTFAIQLMKAWGAHVTAVCSRDAKSLVTKLGADDVIDYKSGDTEEQLKPLPLFDFILDNVGGSTEKWALNFLKRWSGATYVTLVTPFLLNMDRLGVADGMLQTGITMGT 317          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|731453424|ref|XP_010599642.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X3 [Loxodonta africana])

HSP 1 Score: 70.4774 bits (171), Expect = 4.874e-10
Identity = 48/161 (29.81%), Postives = 79/161 (49.07%), Query Frame = 0
Query:  147 RPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALL-KAGAEEAIDCRTTSFSERV---PEYAAVVDTVGTDTEGLAANLL-RYKKAAYVSTMPSATRRMQ----AQGLLQAASTFAS 298
            +P+SL+  +   LPY A++    + R G   G         +V I+   G    FAIQV++AWG  V  V  ++ + L+ K GA++ ID ++ +  E++    ++  ++D VG  TE  A N L ++  A YV+ +      M     A G+LQ   T  S
Sbjct:   69 KPKSLTHTQAASLPYVALTAWSAINRIG---GLNDKNCTGKRVLILGASGGVGTFAIQVVKAWGAHVTAVCSQDANELVRKLGADDTIDYKSGNVEEQLKSMKQFDFILDNVGGSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGS 226          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|1003762689|ref|XP_015714142.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Coturnix japonica])

HSP 1 Score: 71.2478 bits (173), Expect = 5.638e-10
Identity = 48/161 (29.81%), Postives = 80/161 (49.69%), Query Frame = 0
Query:  147 RPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALL-KAGAEEAIDCRTTSFSER---VPEYAAVVDTVGTDTEGLAANLL-RYKKAAYVST----MPSATRRMQAQGLLQAASTFAS 298
            +P+ LS  E   LPY  ++    + + G   G   S  +  +V I+   G    FA+Q+++AWG  V  V   + D L+ K GA++ ID +T +  ++   +P +  ++D VG  TE  A +LL ++  A YV+     + +  R   A G+LQ   T  S
Sbjct:  159 KPKCLSHVEAASLPYVGLTAWSAINKVG---GLNQSNCSGKRVLILGASGGVGTFAVQLVKAWGAHVTAVCSHDADTLMRKLGADDVIDYKTGNLEQQLKALPSFDFILDNVGGSTEKWALDLLKKWSGATYVTLVTPFLINMDRLGVADGMLQTGVTIGS 316          
BLAST of EWM22629.1 vs. NCBI_GenBank
Match: gi|1079762118|ref|XP_018550612.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Lates calcarifer])

HSP 1 Score: 71.2478 bits (173), Expect = 6.748e-10
Identity = 55/192 (28.65%), Postives = 91/192 (47.40%), Query Frame = 0
Query:  116 EREPVLAFVGPDIAAGKPGSRIQVPTGVVLPRPESLSLEECILLPYHAVSLLPPLMRAGIHGGEGSSGPASSKVCIVTGCGPAAIFAIQVLRAWGCRVVGVSRRNLDALLKA-GAEEAIDCRTTSFSE---RVPEYAAVVDTVGTDTEGLAANLLR-YKKAAYVST----MPSATRRMQAQGLLQAASTFAS 298
            ER+ V A + P    G     + +    V  +P+SLS  E   +PY A +    L+  G   G      +  ++ I+ G G    FAIQ+L+AWG  V     +N +  ++  GA++ +D       E    + ++  ++D VG DTE  A NLL+ +  A YV+     + +  R   A G++Q A+T A+
Sbjct:  136 ERDEVWAAI-PPWKQGSLAEFVVLSANEVSHKPKSLSHTEAAAIPYVANTAWSALVNTG---GLNKDNCSKKRILILGGSGGVGTFAIQMLKAWGAHVTVTCSQNAERFVRELGADDVVDYTAGPVEEPLSALEKFDLILDNVGGDTERWALNLLKPWSGAKYVTLVTPFLQNTDRLGIADGMMQTAATVAT 323          
The following BLAST results are available for this feature:
BLAST of EWM22629.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103194|gb|EWM22629.1|0.000e+0100.00reticulon 4 interacting protein 1 [Nannochloropsis... [more]
gi|299117596|emb|CBN75438.1|1.757e-2029.48conserved unknown protein [Ectocarpus siliculosus][more]
gi|696991968|ref|XP_009563198.1|1.788e-1128.08PREDICTED: reticulon-4-interacting protein 1, mito... [more]
gi|676592091|gb|KFO79118.1|2.332e-1127.97hypothetical protein N303_13521, partial [Cuculus ... [more]
gi|1057243195|ref|WP_068613282.1|1.286e-1028.44hypothetical protein [Woeseia oceani] >gi|10415262... [more]
gi|1117363429|ref|XP_019375693.1|1.444e-1027.31PREDICTED: reticulon-4-interacting protein 1, mito... [more]
gi|557269121|ref|XP_006019879.1|3.221e-1030.43PREDICTED: reticulon-4-interacting protein 1, mito... [more]
gi|731453424|ref|XP_010599642.1|4.874e-1029.81PREDICTED: reticulon-4-interacting protein 1, mito... [more]
gi|1003762689|ref|XP_015714142.1|5.638e-1029.81PREDICTED: reticulon-4-interacting protein 1, mito... [more]
gi|1079762118|ref|XP_018550612.1|6.748e-1028.65PREDICTED: reticulon-4-interacting protein 1, mito... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8052rna8052Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications