EWM22624.1, cds8010 (CDS) Nannochloropsis gaditana

Overview
NameEWM22624.1
Unique Namecds8010
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:397293..397388 +
Alignment locationKK037247.1:397471..397611 +
Alignment locationKK037247.1:397823..398035 +
Alignment locationKK037247.1:398148..398252 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22624.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100023g19.3940.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:397293..397388 +
KK037247.1supercontigKK037247.1:397471..397611 +
KK037247.1supercontigKK037247.1:397823..398035 +
KK037247.1supercontigKK037247.1:398148..398252 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22624.1 vs. NCBI_GenBank
Match: gi|585103189|gb|EWM22624.1| (hypothetical protein Naga_100023g19 [Nannochloropsis gaditana])

HSP 1 Score: 384.8 bits (987), Expect = 2.411e-135
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 MLPPQRLAARPTQLMAPPQTRPRTAVTHEPIEIHGHSRNSATSKGDTIIHVDCADLQELAFKGEAYDPARPNDYMEFCKERENRAKDEERQREYEKFRKEREEEMRRGRNTLAGLQSLPSNGDNPMPDSIMPARGRGRGGVSNLPSWMTKGAPVEDKNRCVDTLSALESGKTQFADAQVSLECY 184
            MLPPQRLAARPTQLMAPPQTRPRTAVTHEPIEIHGHSRNSATSKGDTIIHVDCADLQELAFKGEAYDPARPNDYMEFCKERENRAKDEERQREYEKFRKEREEEMRRGRNTLAGLQSLPSNGDNPMPDSIMPARGRGRGGVSNLPSWMTKGAPVEDKNRCVDTLSALESGKTQFADAQVSLECY
Sbjct:    1 MLPPQRLAARPTQLMAPPQTRPRTAVTHEPIEIHGHSRNSATSKGDTIIHVDCADLQELAFKGEAYDPARPNDYMEFCKERENRAKDEERQREYEKFRKEREEEMRRGRNTLAGLQSLPSNGDNPMPDSIMPARGRGRGGVSNLPSWMTKGAPVEDKNRCVDTLSALESGKTQFADAQVSLECY 184          
BLAST of EWM22624.1 vs. NCBI_GenBank
Match: gi|1173957967|gb|OQS04399.1| (hypothetical protein THRCLA_03358 [Thraustotheca clavata])

HSP 1 Score: 64.6994 bits (156), Expect = 5.642e-9
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 0
Query:   66 YDPARPNDYMEFCKERENRAKDEERQREYEK----FRKEREEEMRR-GRNTLAGLQSLPSNGDNPMPDSIMPARGRGRGGVSNLPSWMTKGAPVEDKNRCVDTLSALESGKT---QFADA 177
            YDP RPNDYM FC+ER+ R K E+ +R+ EK      +ERE+E  +  R+  AG   +P+     +P       GRGRG   NLP+WMTK   +E+K +     +A  +G +   QF DA
Sbjct:  174 YDPTRPNDYMLFCEERKIRKKQEKVKRDLEKRQERLDREREKEREQLTRDIEAG--RVPTVATTVVPG------GRGRG--MNLPAWMTKK--IEEKTKEQQAATATVAGPSLPGQFEDA 281          
BLAST of EWM22624.1 vs. NCBI_GenBank
Match: gi|1173952156|gb|OQR99892.1| (DNA-damage-repair/toleration protein, chloroplastic-like [Achlya hypogyna])

HSP 1 Score: 58.9214 bits (141), Expect = 4.764e-7
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0
Query:   66 YDPARPNDYMEFCKERENRAKDEERQREYEK----FRKEREEEMRR-GRNTLAGLQSLPSNGDNPMPDSIMPARGRGRGGVSNLPSWMTK 150
            YDP RPNDYM F +ER+ R K ++ +R+ EK      +ERE+E +   R+  AG   +P+     +  +I+P  GRGRG   NLP+WMTK
Sbjct:  189 YDPTRPNDYMTFVEERKIRKKQQKVKRDLEKRQERLDREREKEKQELVRDVAAG--RMPT-----VATTIIPG-GRGRG--VNLPAWMTK 268          
The following BLAST results are available for this feature:
BLAST of EWM22624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585103189|gb|EWM22624.1|2.411e-135100.00hypothetical protein Naga_100023g19 [Nannochlorops... [more]
gi|1173957967|gb|OQS04399.1|5.642e-940.00hypothetical protein THRCLA_03358 [Thraustotheca c... [more]
gi|1173952156|gb|OQR99892.1|4.764e-743.33DNA-damage-repair/toleration protein, chloroplasti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8032rna8032Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications