EWM29870.1, cds801 (CDS) Nannochloropsis gaditana

Overview
NameEWM29870.1
Unique Namecds801
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:449590..449937 +

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Properties
Property NameValue
Protein idEWM29870.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100106g15.1444.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:449590..449937 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR0060582Fe2S_fd_BS
IPR0010412Fe-2S_ferredoxin-type
IPR012675Beta-grasp_dom
Homology
[Close]
BLAST of EWM29870.1 vs. NCBI_GenBank
Match: gi|553180623|ref|XP_005853433.1| (ferredoxin [Nannochloropsis gaditana CCMP526] >gi|422295625|gb|EKU22924.1| ferredoxin [Nannochloropsis gaditana CCMP526] >gi|585112452|gb|EWM29870.1| conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 238.039 bits (606), Expect = 1.610e-79
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MKHQANTMMLRIVQALTLLMATTAFFAPHAPSAGIKRGGPVYNGDVEVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTLKP 115
            MKHQANTMMLRIVQALTLLMATTAFFAPHAPSAGIKRGGPVYNGDVEVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTLKP
Sbjct:    1 MKHQANTMMLRIVQALTLLMATTAFFAPHAPSAGIKRGGPVYNGDVEVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTLKP 115
[Close]
BLAST of EWM29870.1 vs. NCBI_GenBank
Match: gi|298708008|emb|CBJ30370.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.7297 bits (208), Expect = 4.939e-19
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0 
Query:    8 MMLRIVQALTLLMA-TTAFFAPHAPSAGIKRGGPVYNGDV-EVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTL 113
            M  R+V  +  ++A   AF AP      + R  P  +  + +V +PG KK KA  G  LK VA +A Y   YGCEEGKCG+CEHK  +GKK R+CI K+P  AGP T 
Sbjct:    1 MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSR--PTNSLSMADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHK-VNGKKIRLCIGKLPAGAGPFTF 105
The following BLAST results are available for this feature:
BLAST of EWM29870.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|553180623|ref|XP_005853433.1|1.610e-79100.00ferredoxin [Nannochloropsis gaditana CCMP526] >gi|... [more]
gi|298708008|emb|CBJ30370.1|4.939e-1945.37conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna801rna801Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications